RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 FGF16O43320 207 aa6.58□□□□□ -1.36
NEDD9-204ENST00000448183 SNAI2O43623 268 aa6.58□□□□□ -1.36
NEDD9-204ENST00000448183 SERF1AO75920 110 aa6.58□□□□□ -1.36
NEDD9-204ENST00000448183 PPP1R17O96001 155 aa6.58□□□□□ -1.36
NEDD9-204ENST00000448183 ATP5G2Q06055 141 aa6.58□□□□□ -1.36
NEDD9-204ENST00000448183 GCSAMLQ5JQS6 135 aa6.58□□□□□ -1.36
NEDD9-204ENST00000448183 FAM159AQ6UWV7 190 aa6.58□□□□□ -1.36
NEDD9-204ENST00000448183 ACP7Q6ZNF0 438 aa6.58□□□□□ -1.36
NEDD9-204ENST00000448183 SAP25Q8TEE9 199 aa6.58□□□□□ -1.36
NEDD9-204ENST00000448183 RAX2Q96IS3 184 aa6.58□□□□□ -1.36
NEDD9-204ENST00000448183 SPOCK3Q9BQ16 436 aa6.58□□□□□ -1.36
NEDD9-204ENST00000448183 GP6Q9HCN6 339 aa6.58□□□□□ -1.36
NEDD9-204ENST00000448183 NRN1Q9NPD7 142 aa6.58□□□□□ -1.36
NEDD9-204ENST00000448183 COL11A2P13942 1736 aaPredicted RBP6.58□□□□□ -1.36
NEDD9-204ENST00000448183 SBF2Q86WG5 1849 aa6.58□□□□□ -1.36
NEDD9-204ENST00000448183 SDK2Q58EX2 2172 aa6.58□□□□□ -1.36
NEDD9-204ENST00000448183 IZUMO1RA6ND01 250 aa6.58□□□□□ -1.36
NEDD9-204ENST00000448183 LDLRAD4O15165 306 aa6.58□□□□□ -1.36
NEDD9-204ENST00000448183 KLRB1Q12918 225 aa6.58□□□□□ -1.36
NEDD9-204ENST00000448183 CACNG8Q8WXS5 425 aa6.58□□□□□ -1.36
NEDD9-204ENST00000448183 OTOFQ9HC10 1997 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 IGKV3D-11A0A0A0MRZ8 115 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 IGHV3-35A0A0C4DH35 117 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 ACSF3Q4G176 576 aaPredicted RBP6.57□□□□□ -1.36
NEDD9-204ENST00000448183 Q6ZT83 130 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 OR52E5Q8NH55 327 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 EEF1AKMT3Q96AZ1 226 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 DICER1Q9UPY3 1922 aaKnown RBP6.57□□□□□ -1.36
NEDD9-204ENST00000448183 INTS1Q8N201 2190 aaKnown RBP6.57□□□□□ -1.36
NEDD9-204ENST00000448183 RNASE1P07998 156 aaKnown RBP6.57□□□□□ -1.36
NEDD9-204ENST00000448183 GLRXP35754 106 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 UCNP55089 124 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 WDR82Q6UXN9 313 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 CIARTQ8N365 385 aaPredicted RBP6.57□□□□□ -1.36
NEDD9-204ENST00000448183 PNKDQ8N490 385 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 FAM169BQ8N8A8 192 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 TEX45Q8NA69 505 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 TMEM106BQ9NUM4 274 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 IGHV3OR16-12A0A075B7B8 117 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 H0YIZ8 118 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 HIST1H2BKO60814 126 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 TSPAN13O95857 204 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 HIST1H2BJP06899 126 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 HIST1H2BOP23527 126 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 HIST1H2BBP33778 126 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 HIST1H2BDP58876 126 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 HIST1H2BCP62807 126 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 HIST2H2BEQ16778 126 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 RSPO4Q2I0M5 234 aaPredicted RBP6.57□□□□□ -1.36
NEDD9-204ENST00000448183 NRN1LQ496H8 165 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.57□□□□□ -1.36
NEDD9-204ENST00000448183 DNASE2BQ8WZ79 361 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 HIST1H2BHQ93079 126 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 HIST1H2BNQ99877 126 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 HIST1H2BMQ99879 126 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 ALKBH7Q9BT30 221 aaPredicted RBP6.57□□□□□ -1.36
NEDD9-204ENST00000448183 JKAMPQ9P055 326 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 RNF115Q9Y4L5 304 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 ATAD5Q96QE3 1844 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 UBE2CO00762 179 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 GPR183P32249 361 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 CCL20P78556 96 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 ORMDL3Q8N138 153 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 FGF11Q92914 225 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 FMC1Q96HJ9 113 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 FOXC2Q99958 501 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 REPIN1Q9BWE0 567 aaKnown RBP6.57□□□□□ -1.36
NEDD9-204ENST00000448183 AICDAQ9GZX7 198 aa6.57□□□□□ -1.36
NEDD9-204ENST00000448183 CACNA1EQ15878 2313 aa6.56□□□□□ -1.36
NEDD9-204ENST00000448183 ANKRD31Q8N7Z5 1873 aa6.56□□□□□ -1.36
NEDD9-204ENST00000448183 IGHV1-69-2A0A0G2JMI3 117 aa6.56□□□□□ -1.36
NEDD9-204ENST00000448183 TBX6O95947 436 aaPredicted RBP6.56□□□□□ -1.36
NEDD9-204ENST00000448183 SUMO2P61956 95 aaKnown RBP6.56□□□□□ -1.36
NEDD9-204ENST00000448183 SRSF3P84103 164 aaKnown RBP6.56□□□□□ -1.36
NEDD9-204ENST00000448183 MIR17HGQ75NE6 70 aa6.56□□□□□ -1.36
NEDD9-204ENST00000448183 C10orf126Q8N4M7 172 aa6.56□□□□□ -1.36
NEDD9-204ENST00000448183 ZNF418Q8TF45 676 aaPredicted RBP6.56□□□□□ -1.36
NEDD9-204ENST00000448183 MRAP2Q96G30 205 aa6.56□□□□□ -1.36
NEDD9-204ENST00000448183 C5orf30Q96GV9 206 aa6.56□□□□□ -1.36
NEDD9-204ENST00000448183 TIMP4Q99727 224 aa6.56□□□□□ -1.36
NEDD9-204ENST00000448183 C1QTNF5Q9BXJ0 243 aa6.56□□□□□ -1.36
NEDD9-204ENST00000448183 CHCHD2Q9Y6H1 151 aaPredicted RBP6.56□□□□□ -1.36
NEDD9-204ENST00000448183 COL4A1P02462 1669 aa6.56□□□□□ -1.36
NEDD9-204ENST00000448183 LOC105371242A0A075B767 164 aa6.56□□□□□ -1.36
NEDD9-204ENST00000448183 TMEM144Q7Z5S9 345 aa6.56□□□□□ -1.36
NEDD9-204ENST00000448183 OR13A1Q8NGR1 328 aa6.56□□□□□ -1.36
NEDD9-204ENST00000448183 C18orf12Q96KH6 178 aa6.56□□□□□ -1.36
NEDD9-204ENST00000448183 SCGB3A1Q96QR1 104 aa6.56□□□□□ -1.36
NEDD9-204ENST00000448183 KIF26BQ2KJY2 2108 aa6.56□□□□□ -1.36
NEDD9-204ENST00000448183 HIGD1CA8MV81 97 aa6.56□□□□□ -1.36
NEDD9-204ENST00000448183 M0R381 172 aa6.56□□□□□ -1.36
NEDD9-204ENST00000448183 TM4SF5O14894 197 aa6.56□□□□□ -1.36
NEDD9-204ENST00000448183 SFTPCP11686 197 aa6.56□□□□□ -1.36
NEDD9-204ENST00000448183 CLDN16Q9Y5I7 305 aa6.56□□□□□ -1.36
NEDD9-204ENST00000448183 GREB1LQ9C091 1923 aaPredicted RBP6.56□□□□□ -1.36
NEDD9-204ENST00000448183 TRBV6-7A0A0A0MS04 114 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 A0A1W2PR77 199 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 H7C1H1 209 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 MPZP25189 248 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 SNRPD3P62318 126 aaKnown RBP6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms