RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 UPK2O00526 184 aa9.59□□□□□ -0.87
PTPRF-208ENST00000437607 ACTL6BO94805 426 aa9.59□□□□□ -0.87
PTPRF-208ENST00000437607 OR2F2O95006 317 aa9.59□□□□□ -0.87
PTPRF-208ENST00000437607 RPL8P62917 257 aaKnown RBP9.59□□□□□ -0.87
PTPRF-208ENST00000437607 FGL1Q08830 312 aa9.59□□□□□ -0.87
PTPRF-208ENST00000437607 TMEM219Q86XT9 240 aa9.59□□□□□ -0.87
PTPRF-208ENST00000437607 NDUFA11Q86Y39 141 aa9.59□□□□□ -0.87
PTPRF-208ENST00000437607 MMD2Q8IY49 270 aa9.59□□□□□ -0.87
PTPRF-208ENST00000437607 TCTE3Q8IZS6 198 aa9.59□□□□□ -0.87
PTPRF-208ENST00000437607 Q8N6K4 173 aa9.59□□□□□ -0.87
PTPRF-208ENST00000437607 OR4D5Q8NGN0 318 aa9.59□□□□□ -0.87
PTPRF-208ENST00000437607 PPP1R1CQ8WVI7 109 aa9.59□□□□□ -0.87
PTPRF-208ENST00000437607 FYTTD1Q96QD9 318 aaKnown RBP9.59□□□□□ -0.87
PTPRF-208ENST00000437607 SLC25A33Q9BSK2 321 aa9.59□□□□□ -0.87
PTPRF-208ENST00000437607 FBXL15Q9H469 300 aa9.59□□□□□ -0.87
PTPRF-208ENST00000437607 TPSG1Q9NRR2 321 aa9.59□□□□□ -0.87
PTPRF-208ENST00000437607 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.59□□□□□ -0.87
PTPRF-208ENST00000437607 FKBP11Q9NYL4 201 aa9.59□□□□□ -0.87
PTPRF-208ENST00000437607 FOXA2Q9Y261 457 aaPredicted RBP9.59□□□□□ -0.87
PTPRF-208ENST00000437607 NSG2Q9Y328 171 aa9.59□□□□□ -0.87
PTPRF-208ENST00000437607 LSM5Q9Y4Y9 91 aaKnown RBP9.59□□□□□ -0.87
PTPRF-208ENST00000437607 FAM90A26D6RGX4 464 aa9.58□□□□□ -0.88
PTPRF-208ENST00000437607 MED6O75586 246 aa9.58□□□□□ -0.88
PTPRF-208ENST00000437607 IFNA17P01571 189 aa9.58□□□□□ -0.88
PTPRF-208ENST00000437607 FGF2P09038 288 aa9.58□□□□□ -0.88
PTPRF-208ENST00000437607 HOXA1P49639 335 aaPredicted RBP9.58□□□□□ -0.88
PTPRF-208ENST00000437607 RAB32Q13637 225 aa9.58□□□□□ -0.88
PTPRF-208ENST00000437607 TNXAQ16473 311 aa9.58□□□□□ -0.88
PTPRF-208ENST00000437607 C5orf64Q2M2E5 130 aa9.58□□□□□ -0.88
PTPRF-208ENST00000437607 TMEM95Q3KNT9 176 aa9.58□□□□□ -0.88
PTPRF-208ENST00000437607 C16orf82Q7Z2V1 217 aa9.58□□□□□ -0.88
PTPRF-208ENST00000437607 NPBQ8NG41 125 aa9.58□□□□□ -0.88
PTPRF-208ENST00000437607 OR5B3Q8NH48 314 aa9.58□□□□□ -0.88
PTPRF-208ENST00000437607 ST6GAL2Q96JF0 529 aa9.58□□□□□ -0.88
PTPRF-208ENST00000437607 CLCC1Q96S66 551 aa9.58□□□□□ -0.88
PTPRF-208ENST00000437607 RASL11BQ9BPW5 248 aa9.58□□□□□ -0.88
PTPRF-208ENST00000437607 QTRT1Q9BXR0 403 aaKnown RBP9.58□□□□□ -0.88
PTPRF-208ENST00000437607 COMMD5Q9GZQ3 224 aa9.58□□□□□ -0.88
PTPRF-208ENST00000437607 ZNF430Q9H8G1 570 aaPredicted RBP9.58□□□□□ -0.88
PTPRF-208ENST00000437607 OR51B2Q9Y5P1 312 aa9.58□□□□□ -0.88
PTPRF-208ENST00000437607 HUWE1Q7Z6Z7 4374 aaKnown RBP9.57□□□□□ -0.88
PTPRF-208ENST00000437607 FXYD6-FXYD2A0A087WZ82 144 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 TRAV3A0A0B4J244 114 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 CEBPZOSA8MTT3 80 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 M0QZK8 103 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 ST8SIA3O43173 380 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 FGF16O43320 207 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 SSSCA1O60232 199 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 PITX3O75364 302 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 CA2P00918 260 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 RLN2P04090 185 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 IGLL1P15814 213 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 PVALBP20472 110 aaPredicted RBP9.57□□□□□ -0.88
PTPRF-208ENST00000437607 MAS1LP35410 378 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 GNB1P62873 340 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 BLCAPP62952 87 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 TNFRSF9Q07011 255 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 PRSS8Q16651 343 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 ZFP69Q49AA0 526 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 Q6ZRM9 215 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 ZNF429Q86V71 674 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 PPP1R27Q86WC6 154 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 MRPL41Q8IXM3 137 aaKnown RBP9.57□□□□□ -0.88
PTPRF-208ENST00000437607 FAM71E2Q8N5Q1 922 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 WFDC9Q8NEX5 89 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 OR4F17Q8NGA8 305 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 THAP6Q8TBB0 222 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 RITA1Q96K30 269 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 RBM14Q96PK6 669 aaKnown RBP9.57□□□□□ -0.88
PTPRF-208ENST00000437607 OR4F4Q96R69 305 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 NEURL2Q9BR09 285 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 ENY2Q9NPA8 101 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 TMEM14BQ9NUH8 114 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 HSPB7Q9UBY9 170 aa9.57□□□□□ -0.88
PTPRF-208ENST00000437607 RCL1Q9Y2P8 373 aaKnown RBP9.57□□□□□ -0.88
PTPRF-208ENST00000437607 SMLR1H3BR10 107 aa9.56□□□□□ -0.88
PTPRF-208ENST00000437607 K7EIL1 84 aa9.56□□□□□ -0.88
PTPRF-208ENST00000437607 K7EPK0 472 aa9.56□□□□□ -0.88
PTPRF-208ENST00000437607 L7N2F9 121 aa9.56□□□□□ -0.88
PTPRF-208ENST00000437607 MPC2O95563 127 aa9.56□□□□□ -0.88
PTPRF-208ENST00000437607 MBPP02686 304 aaPredicted RBP9.56□□□□□ -0.88
PTPRF-208ENST00000437607 CRYGBP07316 175 aa9.56□□□□□ -0.88
PTPRF-208ENST00000437607 PSMB6P28072 239 aa9.56□□□□□ -0.88
PTPRF-208ENST00000437607 RPL27AP46776 148 aaKnown RBP9.56□□□□□ -0.88
PTPRF-208ENST00000437607 F2RL1P55085 397 aa9.56□□□□□ -0.88
PTPRF-208ENST00000437607 SPCS3P61009 180 aa9.56□□□□□ -0.88
PTPRF-208ENST00000437607 VAMP2P63027 116 aa9.56□□□□□ -0.88
PTPRF-208ENST00000437607 OR1L8Q8NGR8 309 aa9.56□□□□□ -0.88
PTPRF-208ENST00000437607 OR52E5Q8NH55 327 aa9.56□□□□□ -0.88
PTPRF-208ENST00000437607 ABHD5Q8WTS1 349 aa9.56□□□□□ -0.88
PTPRF-208ENST00000437607 HINT2Q9BX68 163 aa9.56□□□□□ -0.88
PTPRF-208ENST00000437607 PRSS22Q9GZN4 317 aa9.56□□□□□ -0.88
PTPRF-208ENST00000437607 MAGT1Q9H0U3 335 aa9.56□□□□□ -0.88
PTPRF-208ENST00000437607 PLEKHA3Q9HB20 300 aa9.56□□□□□ -0.88
PTPRF-208ENST00000437607 MBD2Q9UBB5 411 aa9.56□□□□□ -0.88
PTPRF-208ENST00000437607 ZNF257Q9Y2Q1 563 aa9.56□□□□□ -0.88
PTPRF-208ENST00000437607 A0A1W2PN81 502 aa9.55□□□□□ -0.88
PTPRF-208ENST00000437607 SYNGR2O43760 224 aa9.55□□□□□ -0.88
PTPRF-208ENST00000437607 DEDDO75618 318 aa9.55□□□□□ -0.88
PTPRF-208ENST00000437607 CNIH1O95406 144 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms