RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 CASP1P29466 404 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 HIST1H2BBP33778 126 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 CSN1S1P47710 185 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 GABRA2P47869 451 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 PIGPP57054 158 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 HIST1H2BDP58876 126 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 DEFA3P59666 94 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 HIST1H2BCP62807 126 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 RPL30P62888 115 aaKnown RBP3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 FUT5Q11128 374 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 HIST2H2BEQ16778 126 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 BRMS1LQ5PSV4 323 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 C10orf91Q5T1B1 145 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 Q5W150 140 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 C12orf45Q8N5I9 185 aaPredicted RBP3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 ZFAND2AQ8N6M9 145 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 TMEM105Q8N8V8 129 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 ZNF709Q8N972 641 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 NUP35Q8NFH5 326 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 BPIFB6Q8NFQ5 453 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 RNASE11Q8TAA1 199 aaKnown RBP3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 FNDC9Q8TBE3 224 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 CD200R1Q8TD46 325 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 HIST1H2BHQ93079 126 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 CAPZA3Q96KX2 299 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 HIST1H2BNQ99877 126 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 HIST1H2BMQ99879 126 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 KLK5Q9Y337 293 aaPredicted RBP3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 ASB4Q9Y574 426 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 HECW2Q9P2P5 1572 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 BORCS7-ASMTA0A0B4J1R7 106 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 TRAV38-1A0A0B4J264 116 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 DUXBA0A1W2PPF3 345 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 DHRS12A0PJE2 317 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 GRIFINA4D1Z8 144 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 A8MWP4 228 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 TRGV3P03979 118 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 SLC25A16P16260 332 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 TSPEAR-AS2P59090 65 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 AP1S1P61966 158 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 PSPHP78330 225 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 CCL20P78556 96 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 AKR1C1Q04828 323 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 SPCS2Q15005 226 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 SSX8Q7RTT4 187 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 TCF24Q7RTU0 167 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 ANGPTL5Q86XS5 388 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 RPRMLQ8N4K4 120 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 APCDD1LQ8NCL9 501 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 ST6GALNAC3Q8NDV1 305 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 OR2J1Q9GZK6 312 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 LINC00574Q9H8X3 128 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 XAGE1AQ9HD64 81 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 RASL12Q9NYN1 266 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 JPT1Q9UK76 154 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 PAIP2BQ9ULR5 123 aaKnown RBP3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 LINC00588Q9Y4M8 146 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 IGSF9BQ9UPX0 1349 aa3.12□□□□□ -1.91
CCDC88A-206ENST00000430086 DENND4BO75064 1496 aaPredicted RBP3.11□□□□□ -1.91
CCDC88A-206ENST00000430086 A8MWP6 167 aa3.11□□□□□ -1.91
CCDC88A-206ENST00000430086 H3BMM0 161 aa3.11□□□□□ -1.91
CCDC88A-206ENST00000430086 PRM2P04554 102 aa3.11□□□□□ -1.91
CCDC88A-206ENST00000430086 DBIP07108 87 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-206ENST00000430086 INAFM2P0DMQ5 153 aa3.11□□□□□ -1.91
CCDC88A-206ENST00000430086 CGB3P0DN86 165 aa3.11□□□□□ -1.91
CCDC88A-206ENST00000430086 CGB7P0DN87 165 aa3.11□□□□□ -1.91
CCDC88A-206ENST00000430086 IGHV3-30-3P0DP02 117 aa3.11□□□□□ -1.91
CCDC88A-206ENST00000430086 NPY1RP25929 384 aa3.11□□□□□ -1.91
CCDC88A-206ENST00000430086 S100A4P26447 101 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-206ENST00000430086 HIST1H4AP62805 103 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-206ENST00000430086 ZNF816Q0VGE8 651 aaPredicted RBP3.11□□□□□ -1.91
CCDC88A-206ENST00000430086 BAMBIQ13145 260 aa3.11□□□□□ -1.91
CCDC88A-206ENST00000430086 RASL11AQ6T310 242 aa3.11□□□□□ -1.91
CCDC88A-206ENST00000430086 Q6ZQT7 251 aa3.11□□□□□ -1.91
CCDC88A-206ENST00000430086 RPS4Y2Q8TD47 263 aa3.11□□□□□ -1.91
CCDC88A-206ENST00000430086 UBE2WQ96B02 151 aa3.11□□□□□ -1.91
CCDC88A-206ENST00000430086 PFDN5Q99471 154 aa3.11□□□□□ -1.91
CCDC88A-206ENST00000430086 FUT9Q9Y231 359 aa3.11□□□□□ -1.91
CCDC88A-206ENST00000430086 LAMTOR2Q9Y2Q5 125 aa3.11□□□□□ -1.91
CCDC88A-206ENST00000430086 ABCC12Q96J65 1359 aa3.11□□□□□ -1.91
CCDC88A-206ENST00000430086 A0A087WUU8 490 aa3.1□□□□□ -1.91
CCDC88A-206ENST00000430086 DEGS1O15121 323 aa3.1□□□□□ -1.91
CCDC88A-206ENST00000430086 CSN2P05814 226 aa3.1□□□□□ -1.91
CCDC88A-206ENST00000430086 OGNP20774 298 aaKnown RBP3.1□□□□□ -1.91
CCDC88A-206ENST00000430086 FXYD7P58549 80 aa3.1□□□□□ -1.91
CCDC88A-206ENST00000430086 HTR4Q13639 388 aa3.1□□□□□ -1.91
CCDC88A-206ENST00000430086 LY6EQ16553 131 aa3.1□□□□□ -1.91
CCDC88A-206ENST00000430086 IGFL1Q6UW32 110 aa3.1□□□□□ -1.91
CCDC88A-206ENST00000430086 LYPD1Q8N2G4 141 aa3.1□□□□□ -1.91
CCDC88A-206ENST00000430086 OR4D11Q8NGI4 311 aa3.1□□□□□ -1.91
CCDC88A-206ENST00000430086 OR10D4PQ8NGN7 298 aa3.1□□□□□ -1.91
CCDC88A-206ENST00000430086 THEM6Q8WUY1 208 aa3.1□□□□□ -1.91
CCDC88A-206ENST00000430086 ISOC1Q96CN7 298 aa3.1□□□□□ -1.91
CCDC88A-206ENST00000430086 CCDC115Q96NT0 180 aa3.1□□□□□ -1.91
CCDC88A-206ENST00000430086 DOHHQ9BU89 302 aa3.1□□□□□ -1.91
CCDC88A-206ENST00000430086 TMEM126AQ9H061 195 aa3.1□□□□□ -1.91
CCDC88A-206ENST00000430086 RNF122Q9H9V4 155 aa3.1□□□□□ -1.91
CCDC88A-206ENST00000430086 IL36BQ9NZH7 164 aa3.1□□□□□ -1.91
CCDC88A-206ENST00000430086 CKLFQ9UBR5 152 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms