RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 LY6G6CO95867 125 aa10.83□□□□□ -0.68
SDC1-204ENST00000429035 OR13C7P0DN81 318 aa10.83□□□□□ -0.68
SDC1-204ENST00000429035 SCAND1P57086 179 aa10.83□□□□□ -0.68
SDC1-204ENST00000429035 NEDD8Q15843 81 aa10.83□□□□□ -0.68
SDC1-204ENST00000429035 DEFB135Q30KP9 77 aa10.83□□□□□ -0.68
SDC1-204ENST00000429035 GDPD1Q8N9F7 314 aa10.83□□□□□ -0.68
SDC1-204ENST00000429035 TSPAN14Q8NG11 270 aa10.83□□□□□ -0.68
SDC1-204ENST00000429035 TMEM190Q8WZ59 177 aa10.83□□□□□ -0.68
SDC1-204ENST00000429035 AUNIPQ9H7T9 357 aa10.83□□□□□ -0.68
SDC1-204ENST00000429035 COMMD9Q9P000 198 aa10.83□□□□□ -0.68
SDC1-204ENST00000429035 MRPL27Q9P0M9 148 aaKnown RBP10.83□□□□□ -0.68
SDC1-204ENST00000429035 A0A0A6YYH2 397 aa10.82□□□□□ -0.68
SDC1-204ENST00000429035 TRAV25A0A0B4J276 109 aa10.82□□□□□ -0.68
SDC1-204ENST00000429035 A6NJ64 397 aa10.82□□□□□ -0.68
SDC1-204ENST00000429035 TRAPPC2P0DI81 140 aa10.82□□□□□ -0.68
SDC1-204ENST00000429035 TRAPPC2BP0DI82 140 aa10.82□□□□□ -0.68
SDC1-204ENST00000429035 CBX5P45973 191 aa10.82□□□□□ -0.68
SDC1-204ENST00000429035 APOC4P55056 127 aa10.82□□□□□ -0.68
SDC1-204ENST00000429035 POU2AF1Q16633 256 aa10.82□□□□□ -0.68
SDC1-204ENST00000429035 Q56UQ5 140 aa10.82□□□□□ -0.68
SDC1-204ENST00000429035 ZNF773Q6PK81 442 aa10.82□□□□□ -0.68
SDC1-204ENST00000429035 OR2C3Q8N628 320 aa10.82□□□□□ -0.68
SDC1-204ENST00000429035 OR5AP2Q8NGF4 316 aa10.82□□□□□ -0.68
SDC1-204ENST00000429035 CD300LFQ8TDQ1 290 aa10.82□□□□□ -0.68
SDC1-204ENST00000429035 LINC00476Q8WZB0 136 aa10.82□□□□□ -0.68
SDC1-204ENST00000429035 SRSF8Q9BRL6 282 aaKnown RBP10.82□□□□□ -0.68
SDC1-204ENST00000429035 PLEKHA2Q9HB19 425 aa10.82□□□□□ -0.68
SDC1-204ENST00000429035 NSG2Q9Y328 171 aa10.82□□□□□ -0.68
SDC1-204ENST00000429035 MARCH11A6NNE9 402 aa10.81□□□□□ -0.68
SDC1-204ENST00000429035 PMP2P02689 132 aa10.81□□□□□ -0.68
SDC1-204ENST00000429035 RPL35AP18077 110 aaKnown RBP10.81□□□□□ -0.68
SDC1-204ENST00000429035 PTBP1P26599 531 aaKnown RBP eCLIP10.81□□□□□ -0.68
SDC1-204ENST00000429035 ELLP55199 621 aaPredicted RBP10.81□□□□□ -0.68
SDC1-204ENST00000429035 KLK9Q2XQG4 91 aa10.81□□□□□ -0.68
SDC1-204ENST00000429035 THOC7Q6I9Y2 204 aaKnown RBP10.81□□□□□ -0.68
SDC1-204ENST00000429035 LAMTOR1Q6IAA8 161 aa10.81□□□□□ -0.68
SDC1-204ENST00000429035 OR1L8Q8NGR8 309 aa10.81□□□□□ -0.68
SDC1-204ENST00000429035 BORCS5Q969J3 196 aa10.81□□□□□ -0.68
SDC1-204ENST00000429035 SPAG8Q99932 426 aaPredicted RBP10.81□□□□□ -0.68
SDC1-204ENST00000429035 ZNF2Q9BSG1 426 aaPredicted RBP10.81□□□□□ -0.68
SDC1-204ENST00000429035 ZNF436Q9C0F3 470 aaPredicted RBP10.81□□□□□ -0.68
SDC1-204ENST00000429035 DAZ1Q9NQZ3 744 aaKnown RBP10.81□□□□□ -0.68
SDC1-204ENST00000429035 KLK9Q9UKQ9 250 aa10.81□□□□□ -0.68
SDC1-204ENST00000429035 SPRY2O43597 315 aa10.8□□□□□ -0.68
SDC1-204ENST00000429035 SNAPC5O75971 98 aa10.8□□□□□ -0.68
SDC1-204ENST00000429035 ATP6V1G2O95670 118 aa10.8□□□□□ -0.68
SDC1-204ENST00000429035 C8orf88P0DMB2 117 aa10.8□□□□□ -0.68
SDC1-204ENST00000429035 G6PCP35575 357 aa10.8□□□□□ -0.68
SDC1-204ENST00000429035 WT1-ASQ06250 92 aa10.8□□□□□ -0.68
SDC1-204ENST00000429035 LYG2Q86SG7 212 aa10.8□□□□□ -0.68
SDC1-204ENST00000429035 OR5H2Q8NGV7 314 aa10.8□□□□□ -0.68
SDC1-204ENST00000429035 VN1R17PQ8TDU5 208 aa10.8□□□□□ -0.68
SDC1-204ENST00000429035 GIMAP1Q8WWP7 306 aa10.8□□□□□ -0.68
SDC1-204ENST00000429035 LSM10Q969L4 123 aaKnown RBP10.8□□□□□ -0.68
SDC1-204ENST00000429035 BSCL2Q96G97 398 aaPredicted RBP10.8□□□□□ -0.68
SDC1-204ENST00000429035 FXYD6Q9H0Q3 95 aa10.8□□□□□ -0.68
SDC1-204ENST00000429035 C5orf66Q9H5L9 145 aa10.8□□□□□ -0.68
SDC1-204ENST00000429035 C21orf62Q9NYP8 219 aa10.8□□□□□ -0.68
SDC1-204ENST00000429035 OR51B2Q9Y5P1 312 aa10.8□□□□□ -0.68
SDC1-204ENST00000429035 TEX50A0A1B0GTY4 177 aa10.79□□□□□ -0.68
SDC1-204ENST00000429035 NUPR2A6NF83 97 aa10.79□□□□□ -0.68
SDC1-204ENST00000429035 KRASP01116 189 aa10.79□□□□□ -0.68
SDC1-204ENST00000429035 SERPINE2P07093 398 aa10.79□□□□□ -0.68
SDC1-204ENST00000429035 GNRHRP30968 328 aa10.79□□□□□ -0.68
SDC1-204ENST00000429035 TGFBR1P36897 503 aa10.79□□□□□ -0.68
SDC1-204ENST00000429035 LPAR6P43657 344 aa10.79□□□□□ -0.68
SDC1-204ENST00000429035 RFX2P48378 723 aa10.79□□□□□ -0.68
SDC1-204ENST00000429035 TMEM69Q5SWH9 247 aa10.79□□□□□ -0.68
SDC1-204ENST00000429035 HSD17B13Q7Z5P4 300 aaPredicted RBP10.79□□□□□ -0.68
SDC1-204ENST00000429035 OR5B3Q8NH48 314 aa10.79□□□□□ -0.68
SDC1-204ENST00000429035 YTHDF1Q9BYJ9 559 aaKnown RBP10.79□□□□□ -0.68
SDC1-204ENST00000429035 F11RQ9Y624 299 aaKnown RBP10.79□□□□□ -0.68
SDC1-204ENST00000429035 IGKV3-7A0A075B6H7 116 aa10.78□□□□□ -0.68
SDC1-204ENST00000429035 OR4C46A6NHA9 309 aa10.78□□□□□ -0.68
SDC1-204ENST00000429035 NDUFA4O00483 81 aa10.78□□□□□ -0.68
SDC1-204ENST00000429035 TSPAN4O14817 238 aa10.78□□□□□ -0.68
SDC1-204ENST00000429035 F2RP25116 425 aa10.78□□□□□ -0.68
SDC1-204ENST00000429035 BMI1P35226 326 aa10.78□□□□□ -0.68
SDC1-204ENST00000429035 TFPI2P48307 235 aa10.78□□□□□ -0.68
SDC1-204ENST00000429035 MFAP2P55001 183 aa10.78□□□□□ -0.68
SDC1-204ENST00000429035 EWSR1Q01844 656 aaKnown RBP eCLIP10.78□□□□□ -0.68
SDC1-204ENST00000429035 ODF3L2Q3SX64 289 aa10.78□□□□□ -0.68
SDC1-204ENST00000429035 PHLDA2Q53GA4 152 aa10.78□□□□□ -0.68
SDC1-204ENST00000429035 UBE2NLQ5JXB2 153 aa10.78□□□□□ -0.68
SDC1-204ENST00000429035 SPSB3Q6PJ21 355 aa10.78□□□□□ -0.68
SDC1-204ENST00000429035 STPG3Q8N7X2 389 aa10.78□□□□□ -0.68
SDC1-204ENST00000429035 FCAMRQ8WWV6 532 aa10.78□□□□□ -0.68
SDC1-204ENST00000429035 MOB3AQ96BX8 217 aa10.78□□□□□ -0.68
SDC1-204ENST00000429035 MISP3Q96FF7 219 aa10.78□□□□□ -0.68
SDC1-204ENST00000429035 S100A16Q96FQ6 103 aaKnown RBP10.78□□□□□ -0.68
SDC1-204ENST00000429035 CHRDL1Q9BU40 450 aa10.78□□□□□ -0.68
SDC1-204ENST00000429035 IGHV3-49A0A0A0MS15 119 aa10.77□□□□□ -0.69
SDC1-204ENST00000429035 XRCC3O43542 346 aa10.77□□□□□ -0.69
SDC1-204ENST00000429035 PGLYRP1O75594 196 aaPredicted RBP10.77□□□□□ -0.69
SDC1-204ENST00000429035 YIF1AO95070 293 aa10.77□□□□□ -0.69
SDC1-204ENST00000429035 CTSDP07339 412 aaPredicted RBP10.77□□□□□ -0.69
SDC1-204ENST00000429035 TAS2R46P59540 309 aa10.77□□□□□ -0.69
SDC1-204ENST00000429035 TAS2R20P59543 309 aa10.77□□□□□ -0.69
SDC1-204ENST00000429035 LSM3P62310 102 aaKnown RBP10.77□□□□□ -0.69
SDC1-204ENST00000429035 CMTM1Q8IZ96 169 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms