RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 TMEM106AQ96A25 262 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 MS4A6EQ96DS6 147 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 TVP23CQ96ET8 276 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 OR10C1Q96KK4 312 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 IMMP2LQ96T52 175 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 SPIN2AQ99865 258 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 SPIN2BQ9BPZ2 258 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 NUDT9Q9BW91 350 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 EIF5A2Q9GZV4 153 aaKnown RBP2.78□□□□□ -1.96
VPS54-204ENST00000416400 CSNK1G1Q9HCP0 422 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 CYTL1Q9NRR1 136 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 CA10Q9NS85 328 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 C5P01031 1676 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 PIGBOS1A0A0B4J2F0 54 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 IFITM5A6NNB3 132 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 UMAD1C9J7I0 102 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 CLDN34H7C241 214 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 K7EPK0 472 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 RCBTB2O95199 551 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 PDYNP01213 254 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 PMP2P02689 132 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 IFNA6P05013 189 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 APODP05090 189 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 MMP7P09237 267 aaPredicted RBP2.77□□□□□ -1.97
VPS54-204ENST00000416400 MPC1LP0DKB6 136 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 FABP4P15090 132 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 ADCYAP1P18509 176 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 GABRA4P48169 554 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 PRLHRP49683 370 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 POLR2HP52434 150 aaKnown RBP2.77□□□□□ -1.97
VPS54-204ENST00000416400 AKR1C2P52895 323 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 LINC00315P59091 139 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 UBE2G2P60604 165 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 UBE2KP61086 200 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 LAMTOR4Q0VGL1 99 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 TMEM176BQ3YBM2 270 aaPredicted RBP2.77□□□□□ -1.97
VPS54-204ENST00000416400 COX19Q49B96 90 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 KHDC3LQ587J8 217 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 FAM27D1Q5T7N8 215 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 PRSS54Q6PEW0 395 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 DNM1P34Q6PK57 102 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 SHISA6Q6ZSJ9 500 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 SLC25A26Q70HW3 274 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 SLC35E3Q7Z769 313 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 LYG2Q86SG7 212 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 RBM45Q8IUH3 476 aaKnown RBP2.77□□□□□ -1.97
VPS54-204ENST00000416400 TMEM86AQ8N2M4 240 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 ZNF664Q8N3J9 261 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 CYB561A3Q8NBI2 242 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 ZNF738Q8NE65 137 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 OR2M7Q8NG81 312 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 OR4E2Q8NGC2 313 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 OR52L1Q8NGH7 329 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 OR13C4Q8NGS5 318 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 OR2T27Q8NH04 317 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 OR51Q1Q8NH59 317 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 MFSD8Q8NHS3 518 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 SFXN5Q8TD22 340 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 CD200R1Q8TD46 325 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 PPP1R1CQ8WVI7 109 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 OR5P2Q8WZ92 322 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 AQP10Q96PS8 301 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 C20orf144Q9BQM9 153 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 VPS25Q9BRG1 176 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 MIEN1Q9BRT3 115 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 MED10Q9BTT4 135 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 CHCHD7Q9BUK0 85 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 RAB1BQ9H0U4 201 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 OR51I1Q9H343 314 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 TAF9BQ9HBM6 251 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 SPANXA1Q9NS26 97 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 SLC7A11Q9UPY5 501 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 NOP16Q9Y3C1 178 aaKnown RBP2.77□□□□□ -1.97
VPS54-204ENST00000416400 PUS1Q9Y606 427 aaKnown RBP eCLIP2.77□□□□□ -1.97
VPS54-204ENST00000416400 PAPPAQ13219 1627 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 CABIN1Q9Y6J0 2220 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 BRCA1P38398 1863 aaKnown RBP2.77□□□□□ -1.97
VPS54-204ENST00000416400 ARFGEF2Q9Y6D5 1785 aa2.77□□□□□ -1.97
VPS54-204ENST00000416400 SIGLEC1Q9BZZ2 1709 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 TNRC6CQ9HCJ0 1690 aaKnown RBP2.76□□□□□ -1.97
VPS54-204ENST00000416400 TRBV24-1A0A075B6N3 115 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 TRAV14DV4A0A0A6YYC5 116 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 TGIF2-C20orf24A0A0A6YYL0 155 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 TRAV8-6A0A0B4J262 113 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 IGKV6-21A0A0C4DH24 114 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 TLCD2A6NGC4 264 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 RIIAD1A6NNX1 92 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 ZNF736B4DX44 427 aaPredicted RBP2.76□□□□□ -1.97
VPS54-204ENST00000416400 TMEM238C9JI98 176 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 FTCDNL1E5RQL4 147 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 J3QRE1 110 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 J3QT63 122 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 K7EN84 100 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 CDIPTO14735 213 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 TCF21O43680 179 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 HIST1H2BKO60814 126 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 TNFSF15O95150 251 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 MPZL1O95297 269 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 CYB5AP00167 134 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 RPN2P04844 631 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms