RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 NDPQ00604 133 aa14.29□□□□□ -0.12
SDC1-203ENST00000403076 PRCDQ00LT1 54 aa14.29□□□□□ -0.12
SDC1-203ENST00000403076 RAB32Q13637 225 aa14.29□□□□□ -0.12
SDC1-203ENST00000403076 Q6ZS46 218 aa14.29□□□□□ -0.12
SDC1-203ENST00000403076 RANGRFQ9HD47 186 aaPredicted RBP14.29□□□□□ -0.12
SDC1-203ENST00000403076 HEYLQ9NQ87 328 aaPredicted RBP14.29□□□□□ -0.12
SDC1-203ENST00000403076 A0A1W2PN81 502 aa14.28□□□□□ -0.12
SDC1-203ENST00000403076 LINC01548A6NM66 108 aa14.28□□□□□ -0.12
SDC1-203ENST00000403076 SSSCA1O60232 199 aa14.28□□□□□ -0.12
SDC1-203ENST00000403076 IGHG2P01859 326 aa14.28□□□□□ -0.12
SDC1-203ENST00000403076 PSMB6P28072 239 aa14.28□□□□□ -0.12
SDC1-203ENST00000403076 CHRNA7P36544 502 aa14.28□□□□□ -0.12
SDC1-203ENST00000403076 LURAP1LQ8IV03 231 aa14.28□□□□□ -0.12
SDC1-203ENST00000403076 MRPL41Q8IXM3 137 aaKnown RBP14.28□□□□□ -0.12
SDC1-203ENST00000403076 OR10W1Q8NGF6 305 aa14.28□□□□□ -0.12
SDC1-203ENST00000403076 OR2T35Q8NGX2 323 aa14.28□□□□□ -0.12
SDC1-203ENST00000403076 DTD1Q8TEA8 209 aa14.28□□□□□ -0.12
SDC1-203ENST00000403076 HIPK2Q9H2X6 1198 aa14.28□□□□□ -0.12
SDC1-203ENST00000403076 RCL1Q9Y2P8 373 aaKnown RBP14.28□□□□□ -0.12
SDC1-203ENST00000403076 K7EPK0 472 aa14.27□□□□□ -0.12
SDC1-203ENST00000403076 L7N2F9 121 aa14.27□□□□□ -0.12
SDC1-203ENST00000403076 ATP6V0E1O15342 81 aa14.27□□□□□ -0.12
SDC1-203ENST00000403076 IAPPP10997 89 aa14.27□□□□□ -0.12
SDC1-203ENST00000403076 PVALBP20472 110 aaPredicted RBP14.27□□□□□ -0.12
SDC1-203ENST00000403076 RPL15P61313 204 aaKnown RBP14.27□□□□□ -0.12
SDC1-203ENST00000403076 VAMP2P63027 116 aa14.27□□□□□ -0.12
SDC1-203ENST00000403076 TET2Q6N021 2002 aaPredicted RBP14.27□□□□□ -0.13
SDC1-203ENST00000403076 A0A1B0GW64 132 aa14.26□□□□□ -0.13
SDC1-203ENST00000403076 CGB1A6NKQ9 187 aa14.26□□□□□ -0.13
SDC1-203ENST00000403076 OR13C7P0DN81 318 aa14.26□□□□□ -0.13
SDC1-203ENST00000403076 ERHP84090 104 aaKnown RBP14.26□□□□□ -0.13
SDC1-203ENST00000403076 TMEM267Q0VDI3 215 aaPredicted RBP14.26□□□□□ -0.13
SDC1-203ENST00000403076 ECSCRQ19T08 205 aa14.26□□□□□ -0.13
SDC1-203ENST00000403076 PDLIM3Q53GG5 364 aaPredicted RBP14.26□□□□□ -0.13
SDC1-203ENST00000403076 LFNGQ8NES3 379 aa14.26□□□□□ -0.13
SDC1-203ENST00000403076 ST6GAL2Q96JF0 529 aa14.26□□□□□ -0.13
SDC1-203ENST00000403076 CIB3Q96Q77 187 aaPredicted RBP14.26□□□□□ -0.13
SDC1-203ENST00000403076 ZNF702PQ9H963 129 aa14.26□□□□□ -0.13
SDC1-203ENST00000403076 FBXO7Q9Y3I1 522 aa14.26□□□□□ -0.13
SDC1-203ENST00000403076 WSB1Q9Y6I7 421 aa14.26□□□□□ -0.13
SDC1-203ENST00000403076 TEX22C9J3V5 150 aa14.25□□□□□ -0.13
SDC1-203ENST00000403076 AP4M1O00189 453 aa14.25□□□□□ -0.13
SDC1-203ENST00000403076 PFDN1O60925 122 aa14.25□□□□□ -0.13
SDC1-203ENST00000403076 MPC2O95563 127 aa14.25□□□□□ -0.13
SDC1-203ENST00000403076 PET100P0DJ07 73 aa14.25□□□□□ -0.13
SDC1-203ENST00000403076 FGL1Q08830 312 aa14.25□□□□□ -0.13
SDC1-203ENST00000403076 UNQ5815/PRO19632Q6UWF5 114 aa14.25□□□□□ -0.13
SDC1-203ENST00000403076 HSD17B13Q7Z5P4 300 aaPredicted RBP14.25□□□□□ -0.13
SDC1-203ENST00000403076 SGMS2Q8NHU3 365 aa14.25□□□□□ -0.13
SDC1-203ENST00000403076 THAP6Q8TBB0 222 aa14.25□□□□□ -0.13
SDC1-203ENST00000403076 LINC00527Q9UJ94 153 aa14.25□□□□□ -0.13
SDC1-203ENST00000403076 REG1AP05451 166 aa14.25□□□□□ -0.13
SDC1-203ENST00000403076 EGR2P11161 476 aaPredicted RBP14.25□□□□□ -0.13
SDC1-203ENST00000403076 SNCAP37840 140 aa14.25□□□□□ -0.13
SDC1-203ENST00000403076 SRSF2Q01130 221 aaKnown RBP14.25□□□□□ -0.13
SDC1-203ENST00000403076 OR2T6Q8NHC8 308 aa14.25□□□□□ -0.13
SDC1-203ENST00000403076 RAB40CQ96S21 281 aa14.25□□□□□ -0.13
SDC1-203ENST00000403076 SRSF8Q9BRL6 282 aaKnown RBP14.25□□□□□ -0.13
SDC1-203ENST00000403076 TRAV41A0A0B4J266 112 aa14.24□□□□□ -0.13
SDC1-203ENST00000403076 IGLC7A0M8Q6 106 aa14.24□□□□□ -0.13
SDC1-203ENST00000403076 SMLR1H3BR10 107 aa14.24□□□□□ -0.13
SDC1-203ENST00000403076 LY86O95711 162 aa14.24□□□□□ -0.13
SDC1-203ENST00000403076 AREGP15514 252 aa14.24□□□□□ -0.13
SDC1-203ENST00000403076 VDAC2P45880 294 aaPredicted RBP14.24□□□□□ -0.13
SDC1-203ENST00000403076 RPL23AP62750 156 aaKnown RBP14.24□□□□□ -0.13
SDC1-203ENST00000403076 WT1-ASQ06250 92 aa14.24□□□□□ -0.13
SDC1-203ENST00000403076 TMEM95Q3KNT9 176 aa14.24□□□□□ -0.13
SDC1-203ENST00000403076 Q6ZSV7 163 aa14.24□□□□□ -0.13
SDC1-203ENST00000403076 NOL4LQ96MY1 436 aaPredicted RBP14.24□□□□□ -0.13
SDC1-203ENST00000403076 NEURL2Q9BR09 285 aa14.24□□□□□ -0.13
SDC1-203ENST00000403076 PSENENQ9NZ42 101 aa14.24□□□□□ -0.13
SDC1-203ENST00000403076 PAIP2BQ9ULR5 123 aaKnown RBP14.24□□□□□ -0.13
SDC1-203ENST00000403076 ZFHX3Q15911 3703 aa14.23□□□□□ -0.13
SDC1-203ENST00000403076 G3V318 75 aa14.23□□□□□ -0.13
SDC1-203ENST00000403076 DEDDO75618 318 aa14.23□□□□□ -0.13
SDC1-203ENST00000403076 IFNA10P01566 189 aa14.23□□□□□ -0.13
SDC1-203ENST00000403076 Q5BKY6 102 aa14.23□□□□□ -0.13
SDC1-203ENST00000403076 C11orf87Q6NUJ2 197 aa14.23□□□□□ -0.13
SDC1-203ENST00000403076 PRSS54Q6PEW0 395 aa14.23□□□□□ -0.13
SDC1-203ENST00000403076 TCTE3Q8IZS6 198 aa14.23□□□□□ -0.13
SDC1-203ENST00000403076 OR5T1Q8NG75 326 aa14.23□□□□□ -0.13
SDC1-203ENST00000403076 TAF15Q92804 592 aaKnown RBP eCLIP14.23□□□□□ -0.13
SDC1-203ENST00000403076 TMEM68Q96MH6 324 aa14.23□□□□□ -0.13
SDC1-203ENST00000403076 E5RGE8 158 aa14.22□□□□□ -0.13
SDC1-203ENST00000403076 H0YIZ8 118 aa14.22□□□□□ -0.13
SDC1-203ENST00000403076 TSPAN9O75954 239 aa14.22□□□□□ -0.13
SDC1-203ENST00000403076 IGF1P05019 195 aa14.22□□□□□ -0.13
SDC1-203ENST00000403076 RPP30P78346 268 aaKnown RBP14.22□□□□□ -0.13
SDC1-203ENST00000403076 AKIRIN2Q53H80 203 aa14.22□□□□□ -0.13
SDC1-203ENST00000403076 Q8N2B8 174 aa14.22□□□□□ -0.13
SDC1-203ENST00000403076 OR2C3Q8N628 320 aa14.22□□□□□ -0.13
SDC1-203ENST00000403076 SMIM8Q96KF7 97 aa14.22□□□□□ -0.13
SDC1-203ENST00000403076 OR5AC2Q9NZP5 309 aa14.22□□□□□ -0.13
SDC1-203ENST00000403076 MBD2Q9UBB5 411 aa14.22□□□□□ -0.13
SDC1-203ENST00000403076 TRAV14DV4A0A0A6YYC5 116 aa14.21□□□□□ -0.13
SDC1-203ENST00000403076 INS-IGF2F8WCM5 200 aa14.21□□□□□ -0.13
SDC1-203ENST00000403076 H3BP45 60 aa14.21□□□□□ -0.13
SDC1-203ENST00000403076 DEFA4P12838 97 aa14.21□□□□□ -0.13
SDC1-203ENST00000403076 HTR2BP41595 481 aa14.21□□□□□ -0.13
SDC1-203ENST00000403076 CAV2P51636 162 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms