RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 ATG101Q9BSB4 218 aa15.29■□□□□ 0.04
COL18A1-204ENST00000400337 LINC00312Q9Y6C7 94 aa15.29■□□□□ 0.04
COL18A1-204ENST00000400337 ZCCHC24Q8N2G6 241 aaKnown RBP15.28■□□□□ 0.04
COL18A1-204ENST00000400337 GFI1Q99684 422 aa15.28■□□□□ 0.04
COL18A1-204ENST00000400337 A1L4Q6 167 aa15.28■□□□□ 0.04
COL18A1-204ENST00000400337 MED12Q93074 2177 aa15.28■□□□□ 0.04
COL18A1-204ENST00000400337 GPX1P07203 203 aa15.28■□□□□ 0.04
COL18A1-204ENST00000400337 RAB9AP51151 201 aa15.28■□□□□ 0.04
COL18A1-204ENST00000400337 HIST1H2BAQ96A08 127 aa15.28■□□□□ 0.04
COL18A1-204ENST00000400337 LEPROTL1O95214 131 aa15.28■□□□□ 0.04
COL18A1-204ENST00000400337 RPS20P60866 119 aaKnown RBP15.28■□□□□ 0.04
COL18A1-204ENST00000400337 GPR61Q9BZJ8 451 aa15.28■□□□□ 0.04
COL18A1-204ENST00000400337 CGAP01215 116 aa15.27■□□□□ 0.04
COL18A1-204ENST00000400337 SPATA45Q537H7 98 aa15.27■□□□□ 0.04
COL18A1-204ENST00000400337 WDR82Q6UXN9 313 aa15.27■□□□□ 0.04
COL18A1-204ENST00000400337 OR1N2Q8NGR9 330 aa15.27■□□□□ 0.04
COL18A1-204ENST00000400337 GGACTQ9BVM4 153 aa15.27■□□□□ 0.04
COL18A1-204ENST00000400337 SEMA5BQ9P283 1151 aa15.27■□□□□ 0.04
COL18A1-204ENST00000400337 IGHV3-49A0A0A0MS15 119 aa15.27■□□□□ 0.04
COL18A1-204ENST00000400337 FOXG1P55316 489 aaPredicted RBP15.27■□□□□ 0.04
COL18A1-204ENST00000400337 CENPVQ7Z7K6 275 aaPredicted RBP15.27■□□□□ 0.04
COL18A1-204ENST00000400337 CDK2AP1O14519 115 aa15.27■□□□□ 0.03
COL18A1-204ENST00000400337 TRGV3P03979 118 aa15.27■□□□□ 0.03
COL18A1-204ENST00000400337 KIF26BQ2KJY2 2108 aa15.27■□□□□ 0.03
COL18A1-204ENST00000400337 ICAM4Q14773 271 aa15.27■□□□□ 0.03
COL18A1-204ENST00000400337 KLHDC3Q9BQ90 382 aa15.27■□□□□ 0.03
COL18A1-204ENST00000400337 RAXQ9Y2V3 346 aa15.27■□□□□ 0.03
COL18A1-204ENST00000400337 COL5A1-AS1Q5SY13 56 aa15.26■□□□□ 0.03
COL18A1-204ENST00000400337 PRB3Q04118 309 aaPredicted RBP15.26■□□□□ 0.03
COL18A1-204ENST00000400337 MARVELD3Q96A59 401 aa15.26■□□□□ 0.03
COL18A1-204ENST00000400337 FOXA2Q9Y261 457 aaPredicted RBP15.26■□□□□ 0.03
COL18A1-204ENST00000400337 TRAV24A0A0B4J272 114 aa15.26■□□□□ 0.03
COL18A1-204ENST00000400337 GRIFINA4D1Z8 144 aa15.26■□□□□ 0.03
COL18A1-204ENST00000400337 NBEAP1P0C6P0 100 aa15.26■□□□□ 0.03
COL18A1-204ENST00000400337 RRN3P1Q2M238 152 aa15.26■□□□□ 0.03
COL18A1-204ENST00000400337 FAM89BQ8N5H3 189 aa15.26■□□□□ 0.03
COL18A1-204ENST00000400337 HEATR5BQ9P2D3 2071 aa15.26■□□□□ 0.03
COL18A1-204ENST00000400337 TRPM7Q96QT4 1865 aa15.26■□□□□ 0.03
COL18A1-204ENST00000400337 INTS1Q8N201 2190 aaKnown RBP15.26■□□□□ 0.03
COL18A1-204ENST00000400337 FOXI3A8MTJ6 420 aaPredicted RBP15.26■□□□□ 0.03
COL18A1-204ENST00000400337 TRGC1P0CF51 173 aa15.26■□□□□ 0.03
COL18A1-204ENST00000400337 CA7P43166 264 aa15.26■□□□□ 0.03
COL18A1-204ENST00000400337 FAM53AQ6NSI3 398 aaPredicted RBP15.26■□□□□ 0.03
COL18A1-204ENST00000400337 A0A0A6YYD4 124 aa15.26■□□□□ 0.03
COL18A1-204ENST00000400337 ZNF207O43670 478 aaKnown RBP15.25■□□□□ 0.03
COL18A1-204ENST00000400337 MBNL2Q5VZF2 373 aaKnown RBP15.25■□□□□ 0.03
COL18A1-204ENST00000400337 CDKN1AP38936 164 aa15.25■□□□□ 0.03
COL18A1-204ENST00000400337 GGNQ86UU5 652 aa15.25■□□□□ 0.03
COL18A1-204ENST00000400337 WFIKKN1Q96NZ8 548 aa15.25■□□□□ 0.03
COL18A1-204ENST00000400337 MAP1LC3AQ9H492 121 aa15.25■□□□□ 0.03
COL18A1-204ENST00000400337 SAA2-SAA4A0A096LPE2 208 aa15.25■□□□□ 0.03
COL18A1-204ENST00000400337 IGHV3-66A0A0C4DH42 116 aa15.25■□□□□ 0.03
COL18A1-204ENST00000400337 H3BVH4 76 aa15.25■□□□□ 0.03
COL18A1-204ENST00000400337 LINC00271P0C7V0 271 aa15.25■□□□□ 0.03
COL18A1-204ENST00000400337 SAA2P0DJI9 122 aaPredicted RBP15.25■□□□□ 0.03
COL18A1-204ENST00000400337 CRYGSP22914 178 aa15.25■□□□□ 0.03
COL18A1-204ENST00000400337 FBXL7Q9UJT9 491 aa15.25■□□□□ 0.03
COL18A1-204ENST00000400337 ACACAQ13085 2346 aa15.25■□□□□ 0.03
COL18A1-204ENST00000400337 IGHV1-18A0A0C4DH31 117 aa15.25■□□□□ 0.03
COL18A1-204ENST00000400337 ZNF497Q6ZNH5 498 aa15.24■□□□□ 0.03
COL18A1-204ENST00000400337 LOC102724200A0A096LPH7 203 aaPredicted RBP15.24■□□□□ 0.03
COL18A1-204ENST00000400337 GATA2P23769 480 aaPredicted RBP15.24■□□□□ 0.03
COL18A1-204ENST00000400337 PMCHL1Q16048 86 aa15.24■□□□□ 0.03
COL18A1-204ENST00000400337 RNF126Q9BV68 326 aa15.24■□□□□ 0.03
COL18A1-204ENST00000400337 IGKV1D-8A0A087WSZ0 117 aa15.24■□□□□ 0.03
COL18A1-204ENST00000400337 NUDT3O95989 172 aa15.24■□□□□ 0.03
COL18A1-204ENST00000400337 CDX1P47902 265 aaPredicted RBP15.24■□□□□ 0.03
COL18A1-204ENST00000400337 FOXF2Q12947 444 aa15.24■□□□□ 0.03
COL18A1-204ENST00000400337 ZNF525Q8N782 197 aa15.24■□□□□ 0.03
COL18A1-204ENST00000400337 RNASE6Q93091 150 aaKnown RBP15.24■□□□□ 0.03
COL18A1-204ENST00000400337 C18orf12Q96KH6 178 aa15.24■□□□□ 0.03
COL18A1-204ENST00000400337 IGKV3-20P01619 116 aa15.24■□□□□ 0.03
COL18A1-204ENST00000400337 HINT1P49773 126 aaPredicted RBP15.24■□□□□ 0.03
COL18A1-204ENST00000400337 HIST1H1AQ02539 215 aaPredicted RBP15.24■□□□□ 0.03
COL18A1-204ENST00000400337 RTN4RL2Q86UN3 420 aa15.24■□□□□ 0.03
COL18A1-204ENST00000400337 RAX2Q96IS3 184 aa15.24■□□□□ 0.03
COL18A1-204ENST00000400337 SMAD7O15105 426 aaKnown RBP15.23■□□□□ 0.03
COL18A1-204ENST00000400337 SIAH2O43255 324 aa15.23■□□□□ 0.03
COL18A1-204ENST00000400337 CLDND2Q8NHS1 167 aa15.23■□□□□ 0.03
COL18A1-204ENST00000400337 ANK1P16157 1881 aa15.23■□□□□ 0.03
COL18A1-204ENST00000400337 CLPSP04118 112 aa15.23■□□□□ 0.03
COL18A1-204ENST00000400337 OTX1P32242 354 aaPredicted RBP15.23■□□□□ 0.03
COL18A1-204ENST00000400337 FAM168AQ92567 244 aa15.23■□□□□ 0.03
COL18A1-204ENST00000400337 DUX5Q96PT3 197 aa15.23■□□□□ 0.03
COL18A1-204ENST00000400337 COL25A1Q9BXS0 654 aaPredicted RBP15.23■□□□□ 0.03
COL18A1-204ENST00000400337 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP15.23■□□□□ 0.03
COL18A1-204ENST00000400337 NPIPB6E9PJ23 425 aa15.23■□□□□ 0.03
COL18A1-204ENST00000400337 ZNF324O75467 553 aaPredicted RBP15.23■□□□□ 0.03
COL18A1-204ENST00000400337 VENTXO95231 258 aa15.23■□□□□ 0.03
COL18A1-204ENST00000400337 SAA1P0DJI8 122 aaPredicted RBP15.23■□□□□ 0.03
COL18A1-204ENST00000400337 CBLN1P23435 193 aa15.23■□□□□ 0.03
COL18A1-204ENST00000400337 LY6G6FQ5SQ64 297 aa15.23■□□□□ 0.03
COL18A1-204ENST00000400337 IGHV3OR16-8A0A075B7F1 116 aa15.23■□□□□ 0.03
COL18A1-204ENST00000400337 YPEL1O60688 119 aa15.23■□□□□ 0.03
COL18A1-204ENST00000400337 GPX4P36969 197 aaPredicted RBP15.23■□□□□ 0.03
COL18A1-204ENST00000400337 DLX6P56179 175 aa15.23■□□□□ 0.03
COL18A1-204ENST00000400337 YPEL2Q96QA6 119 aa15.23■□□□□ 0.03
COL18A1-204ENST00000400337 BIVMQ86UB2 503 aa15.22■□□□□ 0.03
COL18A1-204ENST00000400337 C21orf62Q9NYP8 219 aa15.22■□□□□ 0.03
COL18A1-204ENST00000400337 IGKV1-12A0A0C4DH73 117 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms