RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CCL20P78556 96 aa10.06□□□□□ -0.8
SYNPO-202ENST00000394243 UBALD2Q8IYN6 164 aa10.06□□□□□ -0.8
SYNPO-202ENST00000394243 C9JCJ5 164 aa10.06□□□□□ -0.8
SYNPO-202ENST00000394243 FAM159AQ6UWV7 190 aa10.06□□□□□ -0.8
SYNPO-202ENST00000394243 LOXL4Q96JB6 756 aa10.06□□□□□ -0.8
SYNPO-202ENST00000394243 IGHV1OR15-9A0A0B4J2B8 117 aa10.06□□□□□ -0.8
SYNPO-202ENST00000394243 DIDO1Q9BTC0 2240 aaKnown RBP10.06□□□□□ -0.8
SYNPO-202ENST00000394243 ALS2Q96Q42 1657 aa10.06□□□□□ -0.8
SYNPO-202ENST00000394243 PRTN3P24158 256 aa10.06□□□□□ -0.8
SYNPO-202ENST00000394243 ITLN1Q8WWA0 313 aa10.06□□□□□ -0.8
SYNPO-202ENST00000394243 GNB1LQ9BYB4 327 aa10.06□□□□□ -0.8
SYNPO-202ENST00000394243 GTF3AQ92664 365 aaKnown RBP10.06□□□□□ -0.8
SYNPO-202ENST00000394243 JPT1Q9UK76 154 aa10.06□□□□□ -0.8
SYNPO-202ENST00000394243 IGHV3-35A0A0C4DH35 117 aa10.05□□□□□ -0.8
SYNPO-202ENST00000394243 DPM2O94777 84 aa10.05□□□□□ -0.8
SYNPO-202ENST00000394243 GZMBP10144 247 aa10.05□□□□□ -0.8
SYNPO-202ENST00000394243 PF4V1P10720 104 aa10.05□□□□□ -0.8
SYNPO-202ENST00000394243 LILRA6Q6PI73 481 aa10.05□□□□□ -0.8
SYNPO-202ENST00000394243 PROB1E7EW31 1015 aa10.05□□□□□ -0.8
SYNPO-202ENST00000394243 CD5P06127 495 aa10.05□□□□□ -0.8
SYNPO-202ENST00000394243 FSCN3Q9NQT6 498 aa10.05□□□□□ -0.8
SYNPO-202ENST00000394243 SVILO95425 2214 aa10.05□□□□□ -0.8
SYNPO-202ENST00000394243 LRP5O75197 1615 aa10.05□□□□□ -0.8
SYNPO-202ENST00000394243 TRAV5A0A0B4J249 113 aa10.05□□□□□ -0.8
SYNPO-202ENST00000394243 KBTBD11-OT1A0A1B0GTJ5 212 aa10.05□□□□□ -0.8
SYNPO-202ENST00000394243 REG4Q9BYZ8 158 aa10.05□□□□□ -0.8
SYNPO-202ENST00000394243 IGKV1D-42A0A075B6H8 117 aa10.05□□□□□ -0.8
SYNPO-202ENST00000394243 TRAV21A0A0B4J279 112 aa10.05□□□□□ -0.8
SYNPO-202ENST00000394243 A0A1B0GW15 77 aa10.05□□□□□ -0.8
SYNPO-202ENST00000394243 SPINT1O43278 529 aa10.05□□□□□ -0.8
SYNPO-202ENST00000394243 CCL4P13236 92 aa10.05□□□□□ -0.8
SYNPO-202ENST00000394243 UCP1P25874 307 aa10.05□□□□□ -0.8
SYNPO-202ENST00000394243 SRSF6Q13247 344 aaKnown RBP10.05□□□□□ -0.8
SYNPO-202ENST00000394243 H0YIZ8 118 aa10.05□□□□□ -0.8
SYNPO-202ENST00000394243 IGKV3-20P01619 116 aa10.05□□□□□ -0.8
SYNPO-202ENST00000394243 RPL39P5Q59GN2 51 aa10.05□□□□□ -0.8
SYNPO-202ENST00000394243 TEX45Q8NA69 505 aa10.05□□□□□ -0.8
SYNPO-202ENST00000394243 NR2C2APQ86WQ0 139 aa10.04□□□□□ -0.8
SYNPO-202ENST00000394243 PNKDQ8N490 385 aa10.04□□□□□ -0.8
SYNPO-202ENST00000394243 FER1L6-AS1Q8NA97 138 aa10.04□□□□□ -0.8
SYNPO-202ENST00000394243 MYO16Q9Y6X6 1858 aa10.04□□□□□ -0.8
SYNPO-202ENST00000394243 ARFGEF1Q9Y6D6 1849 aa10.04□□□□□ -0.8
SYNPO-202ENST00000394243 FAM106CPP0CH98 169 aa10.04□□□□□ -0.8
SYNPO-202ENST00000394243 RSPO4Q2I0M5 234 aaPredicted RBP10.04□□□□□ -0.8
SYNPO-202ENST00000394243 OCC1Q8TAD7 63 aa10.04□□□□□ -0.8
SYNPO-202ENST00000394243 SEMA5BQ9P283 1151 aa10.04□□□□□ -0.8
SYNPO-202ENST00000394243 DOCK9Q9BZ29 2069 aa10.04□□□□□ -0.8
SYNPO-202ENST00000394243 TRAV8-1A0A0A6YYK1 113 aa10.04□□□□□ -0.8
SYNPO-202ENST00000394243 PMS2CLQ68D20 193 aa10.04□□□□□ -0.8
SYNPO-202ENST00000394243 DPH3Q96FX2 82 aa10.04□□□□□ -0.8
SYNPO-202ENST00000394243 JMJD8Q96S16 334 aa10.04□□□□□ -0.8
SYNPO-202ENST00000394243 LY75O60449 1722 aa10.04□□□□□ -0.8
SYNPO-202ENST00000394243 TRAV2A0A0B4J234 112 aa10.04□□□□□ -0.8
SYNPO-202ENST00000394243 GAGE12BA1L429 117 aa10.04□□□□□ -0.8
SYNPO-202ENST00000394243 HBDP02042 147 aa10.04□□□□□ -0.8
SYNPO-202ENST00000394243 ERVK11-1P61568 191 aa10.04□□□□□ -0.8
SYNPO-202ENST00000394243 ZNF664Q8N3J9 261 aa10.04□□□□□ -0.8
SYNPO-202ENST00000394243 NHSQ6T4R5 1651 aa10.04□□□□□ -0.8
SYNPO-202ENST00000394243 GATA2P23769 480 aaPredicted RBP10.04□□□□□ -0.8
SYNPO-202ENST00000394243 CRIM1Q9NZV1 1036 aa10.04□□□□□ -0.8
SYNPO-202ENST00000394243 PTGDSP41222 190 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 OR52E5Q8NH55 327 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 IFI27L2Q9H2X8 130 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 GP6Q9HCN6 339 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 A0A087X0K7 114 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 ADRA2AP08913 450 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 OCIAD2Q56VL3 154 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 TMEM186Q96B77 213 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 C18orf12Q96KH6 178 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 ANKRD36A6QL64 1941 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 RTTNQ86VV8 2226 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 TRBV24-1A0A075B6N3 115 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 FAM181BA6NEQ2 426 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 TM2D1Q9BX74 207 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 HEATR1Q9H583 2144 aaKnown RBP10.03□□□□□ -0.8
SYNPO-202ENST00000394243 IGHV3OR16-13A0A075B7E8 117 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 IGHV3-74A0A0B4J1X5 117 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 Q6AWC8 147 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 GDF15Q99988 308 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 MS4A6AQ9H2W1 248 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 WFDC1Q9HC57 220 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 KIF26BQ2KJY2 2108 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 ARAP2Q8WZ64 1704 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 GNG5P63218 68 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 IGKCP01834 107 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 Q9H3A6 140 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 ZNF71Q9NQZ8 489 aaPredicted RBP10.03□□□□□ -0.8
SYNPO-202ENST00000394243 TNFRSF18Q9Y5U5 241 aa10.03□□□□□ -0.8
SYNPO-202ENST00000394243 C17orf98A8MV24 154 aa10.02□□□□□ -0.8
SYNPO-202ENST00000394243 H3BRM9 83 aa10.02□□□□□ -0.8
SYNPO-202ENST00000394243 CEACAM4O75871 244 aa10.02□□□□□ -0.8
SYNPO-202ENST00000394243 DCAF10Q5QP82 559 aa10.02□□□□□ -0.8
SYNPO-202ENST00000394243 CHCHD1Q96BP2 118 aaKnown RBP10.02□□□□□ -0.8
SYNPO-202ENST00000394243 TTTY12Q9BZ98 90 aa10.02□□□□□ -0.8
SYNPO-202ENST00000394243 EDA2RQ9HAV5 297 aa10.02□□□□□ -0.8
SYNPO-202ENST00000394243 TMEM242Q9NWH2 141 aa10.02□□□□□ -0.8
SYNPO-202ENST00000394243 DLEC1Q9Y238 1755 aa10.02□□□□□ -0.8
SYNPO-202ENST00000394243 IGHV5-10-1A0A0J9YXX1 117 aa10.02□□□□□ -0.81
SYNPO-202ENST00000394243 CD55P08174 381 aa10.02□□□□□ -0.81
SYNPO-202ENST00000394243 NPPCP23582 126 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms