RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 OR5A1Q8NGJ0 315 aa10.85□□□□□ -0.67
CCDC88C-204ENST00000389857 RPRMQ9NS64 109 aa10.85□□□□□ -0.67
CCDC88C-204ENST00000389857 STHQ8IWL8 128 aa10.85□□□□□ -0.67
CCDC88C-204ENST00000389857 FAM57AQ8TBR7 257 aa10.85□□□□□ -0.67
CCDC88C-204ENST00000389857 WFIKKN1Q96NZ8 548 aa10.85□□□□□ -0.67
CCDC88C-204ENST00000389857 PATJQ8NI35 1801 aa10.85□□□□□ -0.67
CCDC88C-204ENST00000389857 MYOD1P15172 320 aa10.84□□□□□ -0.67
CCDC88C-204ENST00000389857 OR10J3Q5JRS4 329 aa10.84□□□□□ -0.67
CCDC88C-204ENST00000389857 FAM181AQ8N9Y4 354 aa10.84□□□□□ -0.67
CCDC88C-204ENST00000389857 C21orf62Q9NYP8 219 aa10.84□□□□□ -0.67
CCDC88C-204ENST00000389857 CBLN1P23435 193 aa10.84□□□□□ -0.67
CCDC88C-204ENST00000389857 CIARTQ8N365 385 aaPredicted RBP10.84□□□□□ -0.67
CCDC88C-204ENST00000389857 ZNF703Q9H7S9 590 aaPredicted RBP10.84□□□□□ -0.67
CCDC88C-204ENST00000389857 CBLN4Q9NTU7 201 aa10.84□□□□□ -0.67
CCDC88C-204ENST00000389857 TRAV9-1A0A075B6T8 112 aa10.84□□□□□ -0.67
CCDC88C-204ENST00000389857 VDAC2P45880 294 aaPredicted RBP10.84□□□□□ -0.67
CCDC88C-204ENST00000389857 TMEM42Q69YG0 159 aa10.84□□□□□ -0.67
CCDC88C-204ENST00000389857 ZNRF1Q8ND25 227 aa10.84□□□□□ -0.67
CCDC88C-204ENST00000389857 RP1L1Q8IWN7 2480 aaPredicted RBP10.84□□□□□ -0.67
CCDC88C-204ENST00000389857 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.84□□□□□ -0.67
CCDC88C-204ENST00000389857 JMJD8Q96S16 334 aa10.84□□□□□ -0.67
CCDC88C-204ENST00000389857 IGHV3-35A0A0C4DH35 117 aa10.84□□□□□ -0.67
CCDC88C-204ENST00000389857 NDUFA3O95167 84 aa10.84□□□□□ -0.67
CCDC88C-204ENST00000389857 GPR183P32249 361 aa10.84□□□□□ -0.67
CCDC88C-204ENST00000389857 ZNF324BQ6AW86 544 aaPredicted RBP10.84□□□□□ -0.67
CCDC88C-204ENST00000389857 FER1L6-AS1Q8NA97 138 aa10.84□□□□□ -0.67
CCDC88C-204ENST00000389857 LOC101059948A0A1B0GTJ6 334 aa10.83□□□□□ -0.68
CCDC88C-204ENST00000389857 FAM90A1Q86YD7 464 aa10.83□□□□□ -0.68
CCDC88C-204ENST00000389857 ZIC4Q8N9L1 334 aa10.83□□□□□ -0.68
CCDC88C-204ENST00000389857 PRSS53Q2L4Q9 553 aa10.83□□□□□ -0.68
CCDC88C-204ENST00000389857 FAM209BQ5JX69 171 aa10.83□□□□□ -0.68
CCDC88C-204ENST00000389857 CLEC19AQ6UXS0 136 aa10.83□□□□□ -0.68
CCDC88C-204ENST00000389857 DTX2Q86UW9 622 aa10.83□□□□□ -0.68
CCDC88C-204ENST00000389857 FBXL15Q9H469 300 aa10.83□□□□□ -0.68
CCDC88C-204ENST00000389857 TMEM14DPA8MWL7 114 aa10.83□□□□□ -0.68
CCDC88C-204ENST00000389857 EIF3GO75821 320 aaKnown RBP eCLIP10.83□□□□□ -0.68
CCDC88C-204ENST00000389857 CD200R1LQ6Q8B3 271 aa10.83□□□□□ -0.68
CCDC88C-204ENST00000389857 A0A1B0GWB2 263 aa10.83□□□□□ -0.68
CCDC88C-204ENST00000389857 HTN3P15516 51 aa10.83□□□□□ -0.68
CCDC88C-204ENST00000389857 ORMDL3Q8N138 153 aa10.83□□□□□ -0.68
CCDC88C-204ENST00000389857 HEATR5BQ9P2D3 2071 aa10.83□□□□□ -0.68
CCDC88C-204ENST00000389857 EFEMP2O95967 443 aa10.83□□□□□ -0.68
CCDC88C-204ENST00000389857 CGAP01215 116 aa10.83□□□□□ -0.68
CCDC88C-204ENST00000389857 OR5AN1Q8NGI8 311 aa10.83□□□□□ -0.68
CCDC88C-204ENST00000389857 WDYHV1Q96HA8 205 aa10.83□□□□□ -0.68
CCDC88C-204ENST00000389857 OR52E5Q8NH55 327 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 VGLL1Q99990 258 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 YAE1D1Q9NRH1 226 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 IGHV3OR16-13A0A075B7E8 117 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 IGHV3-74A0A0B4J1X5 117 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 FBLIM1Q8WUP2 373 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 IGHV3-49A0A0A0MS15 119 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 TYMSP04818 313 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 BSPH1Q075Z2 132 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 UBR3Q6ZT12 1888 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 SMIM10L1P0DMW3 83 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 CRYBA2P53672 197 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 H2BFSP57053 126 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 OR2K2Q8NGT1 345 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 CACNG8Q8WXS5 425 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 SMIM10Q96HG1 83 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 IGFBP2P18065 325 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 CTAG1AP78358 180 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 TMEM95Q3KNT9 176 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 ATP1A1-AS1Q5TC04 95 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 FDCSPQ8NFU4 85 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 TMEM167AQ8TBQ9 72 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 DMRTA2Q96SC8 542 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 NXT2Q9NPJ8 142 aaKnown RBP10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 KBTBD11-OT1A0A1B0GTJ5 212 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 A0A1B0GV90 55 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 IZUMO1RA6ND01 250 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 Q9H3A6 140 aa10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 TBL2Q9Y4P3 447 aaKnown RBP10.82□□□□□ -0.68
CCDC88C-204ENST00000389857 TMEM50AO95807 157 aa10.81□□□□□ -0.68
CCDC88C-204ENST00000389857 TGIF1Q15583 401 aa10.81□□□□□ -0.68
CCDC88C-204ENST00000389857 LDLRAD2Q5SZI1 272 aa10.81□□□□□ -0.68
CCDC88C-204ENST00000389857 TM2D1Q9BX74 207 aa10.81□□□□□ -0.68
CCDC88C-204ENST00000389857 PDCD11Q14690 1871 aaKnown RBP10.81□□□□□ -0.68
CCDC88C-204ENST00000389857 APC2O95996 2303 aa10.81□□□□□ -0.68
CCDC88C-204ENST00000389857 FOXJ2Q9P0K8 574 aa10.81□□□□□ -0.68
CCDC88C-204ENST00000389857 CRPP02741 224 aa10.81□□□□□ -0.68
CCDC88C-204ENST00000389857 IFI27P40305 119 aaPredicted RBP10.81□□□□□ -0.68
CCDC88C-204ENST00000389857 ST20Q9HBF5 79 aa10.81□□□□□ -0.68
CCDC88C-204ENST00000389857 SIGLEC5O15389 551 aa10.81□□□□□ -0.68
CCDC88C-204ENST00000389857 CD8AP01732 235 aa10.81□□□□□ -0.68
CCDC88C-204ENST00000389857 NHLRC3Q5JS37 347 aa10.81□□□□□ -0.68
CCDC88C-204ENST00000389857 OTORQ9NRC9 128 aa10.81□□□□□ -0.68
CCDC88C-204ENST00000389857 A0A1W2PRX2 142 aa10.81□□□□□ -0.68
CCDC88C-204ENST00000389857 MPTX1A8MV57 137 aa10.81□□□□□ -0.68
CCDC88C-204ENST00000389857 CFHR5Q9BXR6 569 aa10.81□□□□□ -0.68
CCDC88C-204ENST00000389857 NPFFR1Q9GZQ6 430 aa10.81□□□□□ -0.68
CCDC88C-204ENST00000389857 ZNF236Q9UL36 1845 aa10.81□□□□□ -0.68
CCDC88C-204ENST00000389857 PLXNA1Q9UIW2 1896 aa10.81□□□□□ -0.68
CCDC88C-204ENST00000389857 NRN1LQ496H8 165 aa10.81□□□□□ -0.68
CCDC88C-204ENST00000389857 ASCL2Q99929 193 aa10.81□□□□□ -0.68
CCDC88C-204ENST00000389857 GDF15Q99988 308 aa10.81□□□□□ -0.68
CCDC88C-204ENST00000389857 GTSCR1Q86UQ5 136 aa10.8□□□□□ -0.68
CCDC88C-204ENST00000389857 IGKV1D-42A0A075B6H8 117 aa10.8□□□□□ -0.68
CCDC88C-204ENST00000389857 SCO2A0A1W2PP80 73 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms