RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 TNCP24821 2201 aa10.92□□□□□ -0.66
CCDC3-202ENST00000378839 TRGV8A0A0C4DH27 118 aa10.92□□□□□ -0.66
CCDC3-202ENST00000378839 CLDN34H7C241 214 aa10.92□□□□□ -0.66
CCDC3-202ENST00000378839 HOXA5P20719 270 aa10.92□□□□□ -0.66
CCDC3-202ENST00000378839 KIR2DS2P43631 304 aa10.92□□□□□ -0.66
CCDC3-202ENST00000378839 CDX1P47902 265 aaPredicted RBP10.92□□□□□ -0.66
CCDC3-202ENST00000378839 THBS3P49746 956 aa10.92□□□□□ -0.66
CCDC3-202ENST00000378839 GNB1P62873 340 aa10.92□□□□□ -0.66
CCDC3-202ENST00000378839 BATFQ16520 125 aa10.92□□□□□ -0.66
CCDC3-202ENST00000378839 TBR1Q16650 682 aa10.92□□□□□ -0.66
CCDC3-202ENST00000378839 ACOT6Q3I5F7 207 aaPredicted RBP10.92□□□□□ -0.66
CCDC3-202ENST00000378839 GFRALQ6UXV0 394 aa10.92□□□□□ -0.66
CCDC3-202ENST00000378839 AURKAIP1Q9NWT8 199 aaPredicted RBP10.92□□□□□ -0.66
CCDC3-202ENST00000378839 ZZEF1O43149 2961 aa10.92□□□□□ -0.66
CCDC3-202ENST00000378839 C17orf112F2Z3M2 114 aa10.91□□□□□ -0.66
CCDC3-202ENST00000378839 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.91□□□□□ -0.66
CCDC3-202ENST00000378839 PXMP4Q9Y6I8 212 aa10.91□□□□□ -0.66
CCDC3-202ENST00000378839 TMEM250H0YL14 139 aa10.91□□□□□ -0.66
CCDC3-202ENST00000378839 TNFRSF13BO14836 293 aaPredicted RBP10.91□□□□□ -0.66
CCDC3-202ENST00000378839 PFN1P07737 140 aaKnown RBP10.91□□□□□ -0.66
CCDC3-202ENST00000378839 OPRK1P41145 380 aa10.91□□□□□ -0.66
CCDC3-202ENST00000378839 HSPE1P61604 102 aaKnown RBP10.91□□□□□ -0.66
CCDC3-202ENST00000378839 MLANAQ16655 118 aa10.91□□□□□ -0.66
CCDC3-202ENST00000378839 TMEM200BQ69YZ2 307 aa10.91□□□□□ -0.66
CCDC3-202ENST00000378839 RBM14Q96PK6 669 aaKnown RBP10.91□□□□□ -0.66
CCDC3-202ENST00000378839 SEPSECSQ9HD40 501 aaKnown RBP10.91□□□□□ -0.66
CCDC3-202ENST00000378839 PTPRZ1P23471 2315 aaPredicted RBP10.91□□□□□ -0.66
CCDC3-202ENST00000378839 ARFGEF3Q5TH69 2177 aa10.91□□□□□ -0.66
CCDC3-202ENST00000378839 C11orf94C9JXX5 98 aa10.91□□□□□ -0.66
CCDC3-202ENST00000378839 EREGO14944 169 aa10.91□□□□□ -0.66
CCDC3-202ENST00000378839 FOXH1O75593 365 aa10.91□□□□□ -0.66
CCDC3-202ENST00000378839 TNFSF4P23510 183 aa10.91□□□□□ -0.66
CCDC3-202ENST00000378839 ZNF114Q8NC26 417 aa10.91□□□□□ -0.66
CCDC3-202ENST00000378839 MANBALQ9NQG1 85 aa10.91□□□□□ -0.66
CCDC3-202ENST00000378839 ELOVL5Q9NYP7 299 aa10.91□□□□□ -0.66
CCDC3-202ENST00000378839 SLC25A10Q9UBX3 287 aaPredicted RBP10.91□□□□□ -0.66
CCDC3-202ENST00000378839 OR51B2Q9Y5P1 312 aa10.91□□□□□ -0.66
CCDC3-202ENST00000378839 PKDREJQ9NTG1 2253 aa10.91□□□□□ -0.66
CCDC3-202ENST00000378839 CSMD1Q96PZ7 3565 aa10.9□□□□□ -0.66
CCDC3-202ENST00000378839 LRBAP50851 2863 aa10.9□□□□□ -0.66
CCDC3-202ENST00000378839 PGPEP1LA6NFU8 196 aa10.9□□□□□ -0.66
CCDC3-202ENST00000378839 E7EUB6 86 aa10.9□□□□□ -0.66
CCDC3-202ENST00000378839 ARL14EPLP0DKL9 152 aa10.9□□□□□ -0.66
CCDC3-202ENST00000378839 TAS2R60P59551 318 aa10.9□□□□□ -0.66
CCDC3-202ENST00000378839 FOXC1Q12948 553 aa10.9□□□□□ -0.66
CCDC3-202ENST00000378839 POU2AF1Q16633 256 aa10.9□□□□□ -0.66
CCDC3-202ENST00000378839 SLC24A4Q8NFF2 622 aa10.9□□□□□ -0.66
CCDC3-202ENST00000378839 OR13D1Q8NGV5 346 aa10.9□□□□□ -0.66
CCDC3-202ENST00000378839 HINT2Q9BX68 163 aa10.9□□□□□ -0.66
CCDC3-202ENST00000378839 MRPL20Q9BYC9 149 aaKnown RBP10.9□□□□□ -0.66
CCDC3-202ENST00000378839 CTSZQ9UBR2 303 aa10.9□□□□□ -0.66
CCDC3-202ENST00000378839 TMEM178BH3BS89 294 aa10.9□□□□□ -0.66
CCDC3-202ENST00000378839 TRGC1P0CF51 173 aa10.9□□□□□ -0.66
CCDC3-202ENST00000378839 REG1BP48304 166 aa10.9□□□□□ -0.66
CCDC3-202ENST00000378839 BSXQ3C1V8 233 aa10.9□□□□□ -0.66
CCDC3-202ENST00000378839 CCL17Q92583 94 aa10.9□□□□□ -0.66
CCDC3-202ENST00000378839 PACRGQ96M98 296 aaPredicted RBP10.9□□□□□ -0.66
CCDC3-202ENST00000378839 IGKV1OR2-108A0A075B7D4 117 aa10.89□□□□□ -0.67
CCDC3-202ENST00000378839 A6NNC1 897 aa10.89□□□□□ -0.67
CCDC3-202ENST00000378839 SHISA9B4DS77 424 aa10.89□□□□□ -0.67
CCDC3-202ENST00000378839 IRF2P14316 349 aa10.89□□□□□ -0.67
CCDC3-202ENST00000378839 HIST1H1BP16401 226 aaKnown RBP10.89□□□□□ -0.67
CCDC3-202ENST00000378839 NPY1RP25929 384 aa10.89□□□□□ -0.67
CCDC3-202ENST00000378839 REC114Q7Z4M0 266 aa10.89□□□□□ -0.67
CCDC3-202ENST00000378839 OR10W1Q8NGF6 305 aa10.89□□□□□ -0.67
CCDC3-202ENST00000378839 LINC00312Q9Y6C7 94 aa10.89□□□□□ -0.67
CCDC3-202ENST00000378839 TRBV20OR9-2A0A075B6H5 130 aa10.89□□□□□ -0.67
CCDC3-202ENST00000378839 TEX50A0A1B0GTY4 177 aa10.89□□□□□ -0.67
CCDC3-202ENST00000378839 UPK2O00526 184 aa10.89□□□□□ -0.67
CCDC3-202ENST00000378839 RPL31P62899 125 aaKnown RBP10.89□□□□□ -0.67
CCDC3-202ENST00000378839 ZNF833PQ6ZTB9 187 aa10.89□□□□□ -0.67
CCDC3-202ENST00000378839 RAB1CQ92928 201 aa10.89□□□□□ -0.67
CCDC3-202ENST00000378839 NEIL1Q96FI4 390 aaPredicted RBP10.89□□□□□ -0.67
CCDC3-202ENST00000378839 TRBV24-1A0A075B6N3 115 aa10.89□□□□□ -0.67
CCDC3-202ENST00000378839 E7EQL1 145 aa10.89□□□□□ -0.67
CCDC3-202ENST00000378839 SAA1P0DJI8 122 aaPredicted RBP10.89□□□□□ -0.67
CCDC3-202ENST00000378839 IGFBP2P18065 325 aa10.89□□□□□ -0.67
CCDC3-202ENST00000378839 DLX1P56177 255 aa10.89□□□□□ -0.67
CCDC3-202ENST00000378839 C1orf87Q8N0U7 546 aa10.89□□□□□ -0.67
CCDC3-202ENST00000378839 OR5T1Q8NG75 326 aa10.89□□□□□ -0.67
CCDC3-202ENST00000378839 YTHDF2Q9Y5A9 579 aaKnown RBP10.89□□□□□ -0.67
CCDC3-202ENST00000378839 FAM87AP0C7U9 286 aa10.88□□□□□ -0.67
CCDC3-202ENST00000378839 STAG3L2P0CL84 134 aa10.88□□□□□ -0.67
CCDC3-202ENST00000378839 STAG3L3P0CL85 134 aa10.88□□□□□ -0.67
CCDC3-202ENST00000378839 ZNF25P17030 456 aaPredicted RBP10.88□□□□□ -0.67
CCDC3-202ENST00000378839 RPP30P78346 268 aaKnown RBP10.88□□□□□ -0.67
CCDC3-202ENST00000378839 STPG3Q8N7X2 389 aa10.88□□□□□ -0.67
CCDC3-202ENST00000378839 SCNM1Q9BWG6 230 aa10.88□□□□□ -0.67
CCDC3-202ENST00000378839 SAP30LQ9HAJ7 183 aa10.88□□□□□ -0.67
CCDC3-202ENST00000378839 SLC35D1Q9NTN3 355 aa10.88□□□□□ -0.67
CCDC3-202ENST00000378839 CBLN4Q9NTU7 201 aa10.88□□□□□ -0.67
CCDC3-202ENST00000378839 SVEP1Q4LDE5 3571 aa10.88□□□□□ -0.67
CCDC3-202ENST00000378839 TACC2O95359 2948 aa10.88□□□□□ -0.67
CCDC3-202ENST00000378839 hADV38S2A0JD32 116 aa10.88□□□□□ -0.67
CCDC3-202ENST00000378839 NDUFB4O95168 129 aa10.88□□□□□ -0.67
CCDC3-202ENST00000378839 LINC00869P0C866 280 aa10.88□□□□□ -0.67
CCDC3-202ENST00000378839 PRSS8Q16651 343 aa10.88□□□□□ -0.67
CCDC3-202ENST00000378839 NPVFQ9HCQ7 196 aa10.88□□□□□ -0.67
CCDC3-202ENST00000378839 J3QR06 171 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 MPDU1O75352 247 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms