RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 WDR54Q9H977 334 aa7.4□□□□□ -1.23
RTN3-202ENST00000339997 TMEM160Q9NX00 188 aa7.4□□□□□ -1.23
RTN3-202ENST00000339997 HIGD1AQ9Y241 93 aa7.4□□□□□ -1.23
RTN3-202ENST00000339997 PLXNA1Q9UIW2 1896 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 IGHV3OR16-12A0A075B7B8 117 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 CELA3AP09093 270 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 CXCL1P09341 107 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 LRRC75BQ2VPJ9 315 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 ZNF418Q8TF45 676 aaPredicted RBP7.39□□□□□ -1.23
RTN3-202ENST00000339997 LSM10Q969L4 123 aaKnown RBP7.39□□□□□ -1.23
RTN3-202ENST00000339997 VSIRQ9H7M9 311 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 DEPPQ9NTK1 212 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 ODAMA1E959 279 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 K7N7A8 449 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 NAPSAO96009 420 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 RPL27AP46776 148 aaKnown RBP7.39□□□□□ -1.23
RTN3-202ENST00000339997 CLDN18P56856 261 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 ACSF3Q4G176 576 aaPredicted RBP7.39□□□□□ -1.23
RTN3-202ENST00000339997 FAM74A4Q5TZK3 123 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 GFI1Q99684 422 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 IGKV1D-13A0A0B4J2D9 117 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 C17orf98A8MV24 154 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 UBE2L6O14933 153 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 NKX2-8O15522 239 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 RBFOX2O43251 390 aaKnown RBP eCLIP7.39□□□□□ -1.23
RTN3-202ENST00000339997 IGKV1-13P0DP09 117 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 KIR2DS2P43631 304 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 RIPPLY3P57055 190 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 RPL8P62917 257 aaKnown RBP7.39□□□□□ -1.23
RTN3-202ENST00000339997 PMCHL1Q16048 86 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 PRSS8Q16651 343 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 COX19Q49B96 90 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 BMPERQ8N8U9 685 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 HS3ST3B1Q9Y662 390 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 SCN8AQ9UQD0 1980 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 ZP4Q12836 540 aa7.39□□□□□ -1.23
RTN3-202ENST00000339997 HLA-DRB1P01911 266 aa7.38□□□□□ -1.23
RTN3-202ENST00000339997 TRIP6Q15654 476 aaKnown RBP7.38□□□□□ -1.23
RTN3-202ENST00000339997 ZNF124Q15973 351 aa7.38□□□□□ -1.23
RTN3-202ENST00000339997 OR13C6PQ8NH95 151 aa7.38□□□□□ -1.23
RTN3-202ENST00000339997 GTF3AQ92664 365 aaKnown RBP7.38□□□□□ -1.23
RTN3-202ENST00000339997 TMEM101Q96IK0 257 aa7.38□□□□□ -1.23
RTN3-202ENST00000339997 PGPEP1Q9NXJ5 209 aa7.38□□□□□ -1.23
RTN3-202ENST00000339997 PRSS47A8MTI9 375 aa7.38□□□□□ -1.23
RTN3-202ENST00000339997 IGFBP2P18065 325 aa7.38□□□□□ -1.23
RTN3-202ENST00000339997 GCHFRP30047 84 aa7.38□□□□□ -1.23
RTN3-202ENST00000339997 C1QL4Q86Z23 238 aa7.38□□□□□ -1.23
RTN3-202ENST00000339997 TEX29Q8N6K0 151 aa7.38□□□□□ -1.23
RTN3-202ENST00000339997 PRELID3AQ96N28 172 aa7.38□□□□□ -1.23
RTN3-202ENST00000339997 F2RL2O00254 374 aa7.38□□□□□ -1.23
RTN3-202ENST00000339997 MT-ND6P03923 174 aa7.38□□□□□ -1.23
RTN3-202ENST00000339997 C8orf88P0DMB2 117 aa7.38□□□□□ -1.23
RTN3-202ENST00000339997 ZNF645Q8N7E2 425 aa7.38□□□□□ -1.23
RTN3-202ENST00000339997 SSC4DQ8WTU2 575 aa7.38□□□□□ -1.23
RTN3-202ENST00000339997 SMIM8Q96KF7 97 aa7.38□□□□□ -1.23
RTN3-202ENST00000339997 TNRC18O15417 2968 aaPredicted RBP7.38□□□□□ -1.23
RTN3-202ENST00000339997 IGHV3OR16-10A0A075B7F0 116 aa7.38□□□□□ -1.23
RTN3-202ENST00000339997 MGST3O14880 152 aa7.38□□□□□ -1.23
RTN3-202ENST00000339997 SMIM10L1P0DMW3 83 aa7.38□□□□□ -1.23
RTN3-202ENST00000339997 LOXL3P58215 753 aa7.38□□□□□ -1.23
RTN3-202ENST00000339997 OR4D5Q8NGN0 318 aa7.38□□□□□ -1.23
RTN3-202ENST00000339997 SPSB4Q96A44 273 aa7.38□□□□□ -1.23
RTN3-202ENST00000339997 SMIM10Q96HG1 83 aa7.38□□□□□ -1.23
RTN3-202ENST00000339997 MCRIP2Q9BUT9 160 aaKnown RBP7.38□□□□□ -1.23
RTN3-202ENST00000339997 NPCDR1Q9BY65 106 aa7.38□□□□□ -1.23
RTN3-202ENST00000339997 CA11O75493 328 aa7.37□□□□□ -1.23
RTN3-202ENST00000339997 ARF6P62330 175 aa7.37□□□□□ -1.23
RTN3-202ENST00000339997 ZCCHC24Q8N2G6 241 aaKnown RBP7.37□□□□□ -1.23
RTN3-202ENST00000339997 KLF14Q8TD94 323 aaPredicted RBP7.37□□□□□ -1.23
RTN3-202ENST00000339997 OIT3Q8WWZ8 545 aa7.37□□□□□ -1.23
RTN3-202ENST00000339997 TMEM45BQ96B21 275 aa7.37□□□□□ -1.23
RTN3-202ENST00000339997 SCARF2Q96GP6 870 aaPredicted RBP7.37□□□□□ -1.23
RTN3-202ENST00000339997 WFDC1Q9HC57 220 aa7.37□□□□□ -1.23
RTN3-202ENST00000339997 ZFHX2Q9C0A1 2572 aaPredicted RBP7.37□□□□□ -1.23
RTN3-202ENST00000339997 HSPE1P61604 102 aaKnown RBP7.37□□□□□ -1.23
RTN3-202ENST00000339997 RPL23P62829 140 aaKnown RBP7.37□□□□□ -1.23
RTN3-202ENST00000339997 PYY3Q5JQD4 70 aa7.37□□□□□ -1.23
RTN3-202ENST00000339997 LDLRAD2Q5SZI1 272 aa7.37□□□□□ -1.23
RTN3-202ENST00000339997 C1orf210Q8IVY1 113 aa7.37□□□□□ -1.23
RTN3-202ENST00000339997 PRR7Q8TB68 274 aa7.37□□□□□ -1.23
RTN3-202ENST00000339997 RAB1BQ9H0U4 201 aa7.37□□□□□ -1.23
RTN3-202ENST00000339997 ACACBO00763 2458 aa7.37□□□□□ -1.23
RTN3-202ENST00000339997 IGKV1-9A0A0C4DH69 117 aa7.37□□□□□ -1.23
RTN3-202ENST00000339997 COLCA2A8K830 154 aa7.37□□□□□ -1.23
RTN3-202ENST00000339997 NPIPB7O75200 414 aa7.37□□□□□ -1.23
RTN3-202ENST00000339997 PPP1R17O96001 155 aa7.37□□□□□ -1.23
RTN3-202ENST00000339997 AMY1AP04745 511 aa7.37□□□□□ -1.23
RTN3-202ENST00000339997 ZBTB34Q8NCN2 500 aa7.37□□□□□ -1.23
RTN3-202ENST00000339997 CLDND2Q8NHS1 167 aa7.37□□□□□ -1.23
RTN3-202ENST00000339997 HIST1H2BLQ99880 126 aa7.37□□□□□ -1.23
RTN3-202ENST00000339997 FNDC4Q9H6D8 234 aaPredicted RBP7.37□□□□□ -1.23
RTN3-202ENST00000339997 CALYQ9NYX4 217 aa7.37□□□□□ -1.23
RTN3-202ENST00000339997 PPIAL4EA0A075B759 164 aa7.36□□□□□ -1.23
RTN3-202ENST00000339997 PPIAL4FP0DN26 164 aa7.36□□□□□ -1.23
RTN3-202ENST00000339997 MEIG1Q5JSS6 88 aa7.36□□□□□ -1.23
RTN3-202ENST00000339997 OR4A5Q8NH83 315 aa7.36□□□□□ -1.23
RTN3-202ENST00000339997 SDF2L1Q9HCN8 221 aa7.36□□□□□ -1.23
RTN3-202ENST00000339997 PPIAL4AQ9Y536 164 aa7.36□□□□□ -1.23
RTN3-202ENST00000339997 A0A1B0GTI1 187 aa7.36□□□□□ -1.23
RTN3-202ENST00000339997 A0A1W2PQM1 296 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms