RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 CCL13Q99616 98 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 SBF1O95248 1867 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 CCL8P80075 99 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 LOXL4Q96JB6 756 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 ZNF479Q96JC4 524 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 ARHGAP32A7KAX9 2087 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 C1QTNF9P0C862 333 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 ICAM4Q14773 271 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 RSPO4Q2I0M5 234 aaPredicted RBP7.47□□□□□ -1.21
USF3-201ENST00000316407 HIST3H2BBQ8N257 126 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 ZPBPQ9BS86 351 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 SRD5A2P31213 254 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 SOX8P57073 446 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 SRSF6Q13247 344 aaKnown RBP7.47□□□□□ -1.21
USF3-201ENST00000316407 G6PC2Q9NQR9 355 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 SIPA1L1O43166 1804 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 NPFFO15130 113 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 PSG9Q00887 426 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 PMS2CLQ68D20 193 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 MDP1Q86V88 176 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 TMEM106BQ9NUM4 274 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 A0A0U1RRA0 63 aa7.46□□□□□ -1.21
USF3-201ENST00000316407 GZMHP20718 246 aa7.46□□□□□ -1.21
USF3-201ENST00000316407 GGTLC2Q14390 218 aa7.46□□□□□ -1.21
USF3-201ENST00000316407 MRPL52Q86TS9 123 aaKnown RBP7.46□□□□□ -1.21
USF3-201ENST00000316407 RAB1BQ9H0U4 201 aa7.46□□□□□ -1.21
USF3-201ENST00000316407 PLSCR4Q9NRQ2 329 aa7.46□□□□□ -1.21
USF3-201ENST00000316407 VWA8A3KMH1 1905 aa7.46□□□□□ -1.21
USF3-201ENST00000316407 TMEM187Q14656 261 aa7.46□□□□□ -1.21
USF3-201ENST00000316407 NFAM1Q8NET5 270 aaPredicted RBP7.46□□□□□ -1.21
USF3-201ENST00000316407 SEMA5BQ9P283 1151 aa7.46□□□□□ -1.21
USF3-201ENST00000316407 LOC105371242A0A075B767 164 aa7.46□□□□□ -1.21
USF3-201ENST00000316407 PPIAL4CA0A0B4J2A2 164 aa7.46□□□□□ -1.21
USF3-201ENST00000316407 DLEU1O43261 78 aa7.46□□□□□ -1.21
USF3-201ENST00000316407 PPIAL4GP0DN37 164 aa7.46□□□□□ -1.21
USF3-201ENST00000316407 LIMS2Q7Z4I7 341 aa7.46□□□□□ -1.21
USF3-201ENST00000316407 FBLIM1Q8WUP2 373 aa7.46□□□□□ -1.21
USF3-201ENST00000316407 WFDC12Q8WWY7 111 aa7.46□□□□□ -1.22
USF3-201ENST00000316407 CD33P20138 364 aa7.46□□□□□ -1.22
USF3-201ENST00000316407 RPL39P5Q59GN2 51 aa7.46□□□□□ -1.22
USF3-201ENST00000316407 MARS2Q96GW9 593 aaKnown RBP7.46□□□□□ -1.22
USF3-201ENST00000316407 CXCL1P09341 107 aa7.46□□□□□ -1.22
USF3-201ENST00000316407 LCN12Q6JVE5 192 aa7.46□□□□□ -1.22
USF3-201ENST00000316407 RNF7Q9UBF6 113 aa7.46□□□□□ -1.22
USF3-201ENST00000316407 TMEM262E9PQX1 116 aa7.46□□□□□ -1.22
USF3-201ENST00000316407 C1QAP02745 245 aa7.46□□□□□ -1.22
USF3-201ENST00000316407 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.46□□□□□ -1.22
USF3-201ENST00000316407 GZMMP51124 257 aa7.46□□□□□ -1.22
USF3-201ENST00000316407 DLL1O00548 723 aa7.46□□□□□ -1.22
USF3-201ENST00000316407 RPP21Q9H633 154 aaKnown RBP7.46□□□□□ -1.22
USF3-201ENST00000316407 HOXC4P09017 264 aaPredicted RBP7.45□□□□□ -1.22
USF3-201ENST00000316407 CCL3P10147 92 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 RNASE4P34096 147 aaKnown RBP7.45□□□□□ -1.22
USF3-201ENST00000316407 SMIM8Q96KF7 97 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 ZNF385AQ96PM9 386 aaKnown RBP7.45□□□□□ -1.22
USF3-201ENST00000316407 CYSLTR1Q9Y271 337 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 NPIPB4C9JG80 1138 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 VENTXO95231 258 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 RAB9AP51151 201 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 CTGFP29279 349 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 Q6ZS52 159 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 C9orf40Q8IXQ3 194 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 TMEM170AQ8WVE7 144 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 A0A1W2PQM1 296 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 J3QT63 122 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 ADAMTSL5Q6ZMM2 481 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 LHFPL4Q7Z7J7 247 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 TMEM250H0YL14 139 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 MFAP4P55083 255 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 RIPPLY2Q5TAB7 128 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 ARRDC1-AS1Q9H2J1 176 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 EML5Q05BV3 1969 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 TRBV5-5A0A0J9YX44 114 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 SPTY2D1-AS1A0A0U1RR47 76 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 CEACAM21Q3KPI0 293 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 ANKRD33Q7Z3H0 272 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 COQ2Q96H96 371 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 RASL10BQ96S79 203 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 SLC25A2Q9BXI2 301 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 PKIBQ9C010 78 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 GZMBP10144 247 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 ORAOV1Q8WV07 137 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 ZNF71Q9NQZ8 489 aaPredicted RBP7.45□□□□□ -1.22
USF3-201ENST00000316407 hDV102S1A0JD36 115 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 LINC01565O15544 149 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 TCF20Q9UGU0 1960 aaKnown RBP7.45□□□□□ -1.22
USF3-201ENST00000316407 UCP2P55851 309 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 TRA2AQ13595 282 aaKnown RBP eCLIP7.45□□□□□ -1.22
USF3-201ENST00000316407 MPV17L2Q567V2 206 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 ASCL5Q7RTU5 278 aa7.45□□□□□ -1.22
USF3-201ENST00000316407 LINC01387J3KSC0 135 aa7.44□□□□□ -1.22
USF3-201ENST00000316407 RPS20P60866 119 aaKnown RBP7.44□□□□□ -1.22
USF3-201ENST00000316407 FAM159AQ6UWV7 190 aa7.44□□□□□ -1.22
USF3-201ENST00000316407 TMEM131Q92545 1883 aa7.44□□□□□ -1.22
USF3-201ENST00000316407 hCG_38984A0A1B0GV85 526 aa7.44□□□□□ -1.22
USF3-201ENST00000316407 FSTP19883 344 aa7.44□□□□□ -1.22
USF3-201ENST00000316407 DDB2Q92466 427 aa7.44□□□□□ -1.22
USF3-201ENST00000316407 MARF1Q9Y4F3 1742 aaKnown RBP7.44□□□□□ -1.22
USF3-201ENST00000316407 NKX2-8O15522 239 aa7.44□□□□□ -1.22
USF3-201ENST00000316407 ASPHD2Q6ICH7 369 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms