RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 CFAP161Q6P656 301 aa11.82□□□□□ -0.52
CSPG4-201ENST00000308508 FAM214BQ7L5A3 538 aa11.82□□□□□ -0.52
CSPG4-201ENST00000308508 FER1L6-AS1Q8NA97 138 aa11.82□□□□□ -0.52
CSPG4-201ENST00000308508 PLXNB2O15031 1838 aa11.82□□□□□ -0.52
CSPG4-201ENST00000308508 CENPVL1A0A0U1RR11 272 aa11.82□□□□□ -0.52
CSPG4-201ENST00000308508 A0A1W2PRS3 328 aa11.82□□□□□ -0.52
CSPG4-201ENST00000308508 PAX1P15863 534 aa11.82□□□□□ -0.52
CSPG4-201ENST00000308508 MGST2Q99735 147 aa11.82□□□□□ -0.52
CSPG4-201ENST00000308508 SAMD5Q5TGI4 173 aa11.82□□□□□ -0.52
CSPG4-201ENST00000308508 DRAM1Q8N682 238 aa11.82□□□□□ -0.52
CSPG4-201ENST00000308508 RNASEH2CQ8TDP1 164 aaKnown RBP11.82□□□□□ -0.52
CSPG4-201ENST00000308508 CLEC7AQ9BXN2 247 aa11.82□□□□□ -0.52
CSPG4-201ENST00000308508 IGLV1-36A0A0B4J1U3 117 aa11.81□□□□□ -0.52
CSPG4-201ENST00000308508 MOSP00540 346 aa11.81□□□□□ -0.52
CSPG4-201ENST00000308508 ORAOV1Q8WV07 137 aa11.81□□□□□ -0.52
CSPG4-201ENST00000308508 A0A0J9YW62 118 aa11.81□□□□□ -0.52
CSPG4-201ENST00000308508 COL9A1P20849 921 aa11.81□□□□□ -0.52
CSPG4-201ENST00000308508 DCAF10Q5QP82 559 aa11.81□□□□□ -0.52
CSPG4-201ENST00000308508 PDCD11Q14690 1871 aaKnown RBP11.81□□□□□ -0.52
CSPG4-201ENST00000308508 TEX45Q8NA69 505 aa11.81□□□□□ -0.52
CSPG4-201ENST00000308508 SEMA5BQ9P283 1151 aa11.81□□□□□ -0.52
CSPG4-201ENST00000308508 ATAD5Q96QE3 1844 aa11.81□□□□□ -0.52
CSPG4-201ENST00000308508 COQ2Q96H96 371 aa11.81□□□□□ -0.52
CSPG4-201ENST00000308508 SCN5AQ14524 2016 aa11.81□□□□□ -0.52
CSPG4-201ENST00000308508 TOMM7Q9P0U1 55 aa11.81□□□□□ -0.52
CSPG4-201ENST00000308508 GGTLC3B5MD39 225 aa11.81□□□□□ -0.52
CSPG4-201ENST00000308508 ZNF826PQ6ZT77 177 aa11.81□□□□□ -0.52
CSPG4-201ENST00000308508 GDF15Q99988 308 aa11.8□□□□□ -0.52
CSPG4-201ENST00000308508 ST20Q9HBF5 79 aa11.8□□□□□ -0.52
CSPG4-201ENST00000308508 ZNF236Q9UL36 1845 aa11.8□□□□□ -0.52
CSPG4-201ENST00000308508 CCL21O00585 134 aa11.8□□□□□ -0.52
CSPG4-201ENST00000308508 ATXN8Q156A1 80 aa11.8□□□□□ -0.52
CSPG4-201ENST00000308508 PAPPA2Q9BXP8 1791 aa11.8□□□□□ -0.52
CSPG4-201ENST00000308508 PPIAL4CA0A0B4J2A2 164 aa11.8□□□□□ -0.52
CSPG4-201ENST00000308508 IGHMP01871 453 aa11.8□□□□□ -0.52
CSPG4-201ENST00000308508 PPIAL4GP0DN37 164 aa11.8□□□□□ -0.52
CSPG4-201ENST00000308508 ADMP35318 185 aa11.8□□□□□ -0.52
CSPG4-201ENST00000308508 LILRA6Q6PI73 481 aa11.8□□□□□ -0.52
CSPG4-201ENST00000308508 IFI27P40305 119 aaPredicted RBP11.8□□□□□ -0.52
CSPG4-201ENST00000308508 PEAR1Q5VY43 1037 aaPredicted RBP11.8□□□□□ -0.52
CSPG4-201ENST00000308508 ASPHD2Q6ICH7 369 aa11.8□□□□□ -0.52
CSPG4-201ENST00000308508 LOC390937A0A1W2PQ73 354 aa11.8□□□□□ -0.52
CSPG4-201ENST00000308508 HSD52Q0P140 79 aa11.8□□□□□ -0.52
CSPG4-201ENST00000308508 CHCHD1Q96BP2 118 aaKnown RBP11.8□□□□□ -0.52
CSPG4-201ENST00000308508 LY75O60449 1722 aa11.8□□□□□ -0.52
CSPG4-201ENST00000308508 PRR33A8MZF0 331 aa11.79□□□□□ -0.52
CSPG4-201ENST00000308508 HBDP02042 147 aa11.79□□□□□ -0.52
CSPG4-201ENST00000308508 ZFP36L2P47974 494 aaKnown RBP11.79□□□□□ -0.52
CSPG4-201ENST00000308508 ERVK11-1P61568 191 aa11.79□□□□□ -0.52
CSPG4-201ENST00000308508 AMELYQ99218 206 aa11.79□□□□□ -0.52
CSPG4-201ENST00000308508 RAMP1O60894 148 aa11.79□□□□□ -0.52
CSPG4-201ENST00000308508 GNB1LQ9BYB4 327 aa11.79□□□□□ -0.52
CSPG4-201ENST00000308508 TMEM14DPA8MWL7 114 aa11.79□□□□□ -0.52
CSPG4-201ENST00000308508 AHRRA9YTQ3 701 aa11.79□□□□□ -0.52
CSPG4-201ENST00000308508 SRSF1Q07955 248 aaKnown RBP eCLIP11.79□□□□□ -0.52
CSPG4-201ENST00000308508 TDGF1P13385 188 aa11.79□□□□□ -0.52
CSPG4-201ENST00000308508 PEBP1P30086 187 aaKnown RBP11.79□□□□□ -0.52
CSPG4-201ENST00000308508 ZNF362Q5T0B9 420 aaPredicted RBP11.79□□□□□ -0.52
CSPG4-201ENST00000308508 MAFAQ8NHW3 353 aaPredicted RBP11.79□□□□□ -0.52
CSPG4-201ENST00000308508 PATJQ8NI35 1801 aa11.79□□□□□ -0.52
CSPG4-201ENST00000308508 COX5BP10606 129 aa11.79□□□□□ -0.52
CSPG4-201ENST00000308508 IFI6P09912 130 aa11.79□□□□□ -0.52
CSPG4-201ENST00000308508 MALP21145 153 aa11.79□□□□□ -0.52
CSPG4-201ENST00000308508 TMEM249Q2WGJ8 235 aa11.79□□□□□ -0.52
CSPG4-201ENST00000308508 ZNF562Q6V9R5 426 aa11.79□□□□□ -0.52
CSPG4-201ENST00000308508 NXT2Q9NPJ8 142 aaKnown RBP11.79□□□□□ -0.52
CSPG4-201ENST00000308508 CCL4P13236 92 aa11.79□□□□□ -0.52
CSPG4-201ENST00000308508 VKORC1Q9BQB6 163 aa11.79□□□□□ -0.52
CSPG4-201ENST00000308508 OR52E5Q8NH55 327 aa11.78□□□□□ -0.52
CSPG4-201ENST00000308508 NRTNQ99748 197 aa11.78□□□□□ -0.52
CSPG4-201ENST00000308508 PIMREGQ9BSJ6 248 aa11.78□□□□□ -0.52
CSPG4-201ENST00000308508 IFI27L2Q9H2X8 130 aa11.78□□□□□ -0.52
CSPG4-201ENST00000308508 SPANXA1Q9NS26 97 aa11.78□□□□□ -0.52
CSPG4-201ENST00000308508 STARD6P59095 220 aa11.78□□□□□ -0.52
CSPG4-201ENST00000308508 ATXN7O15265 892 aaPredicted RBP11.78□□□□□ -0.52
CSPG4-201ENST00000308508 FOXS1O43638 330 aa11.78□□□□□ -0.52
CSPG4-201ENST00000308508 ZNF479Q96JC4 524 aa11.78□□□□□ -0.52
CSPG4-201ENST00000308508 IGHV3-48P01763 117 aa11.78□□□□□ -0.52
CSPG4-201ENST00000308508 ZP1P60852 638 aa11.78□□□□□ -0.52
CSPG4-201ENST00000308508 TFF3Q07654 80 aa11.78□□□□□ -0.52
CSPG4-201ENST00000308508 LINC01559Q495D7 138 aa11.78□□□□□ -0.52
CSPG4-201ENST00000308508 PIN1P1O15428 100 aa11.78□□□□□ -0.52
CSPG4-201ENST00000308508 IGKV3-20P01619 116 aa11.78□□□□□ -0.52
CSPG4-201ENST00000308508 CD69Q07108 199 aa11.78□□□□□ -0.52
CSPG4-201ENST00000308508 TMEM52Q8NDY8 209 aa11.78□□□□□ -0.52
CSPG4-201ENST00000308508 YLPM1P49750 1951 aaKnown RBP11.78□□□□□ -0.52
CSPG4-201ENST00000308508 RPL23P62829 140 aaKnown RBP11.78□□□□□ -0.52
CSPG4-201ENST00000308508 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.78□□□□□ -0.52
CSPG4-201ENST00000308508 LEAP2Q969E1 77 aa11.78□□□□□ -0.52
CSPG4-201ENST00000308508 LRP5O75197 1615 aa11.78□□□□□ -0.52
CSPG4-201ENST00000308508 KIAA2026Q5HYC2 2103 aa11.78□□□□□ -0.52
CSPG4-201ENST00000308508 CACNG8Q8WXS5 425 aa11.77□□□□□ -0.52
CSPG4-201ENST00000308508 HIST1H2BKO60814 126 aa11.77□□□□□ -0.52
CSPG4-201ENST00000308508 HIST1H2BJP06899 126 aa11.77□□□□□ -0.52
CSPG4-201ENST00000308508 HIST1H2BOP23527 126 aa11.77□□□□□ -0.52
CSPG4-201ENST00000308508 HIST1H2BBP33778 126 aa11.77□□□□□ -0.52
CSPG4-201ENST00000308508 HIST1H2BDP58876 126 aa11.77□□□□□ -0.52
CSPG4-201ENST00000308508 HIST1H2BCP62807 126 aa11.77□□□□□ -0.52
CSPG4-201ENST00000308508 HIST2H2BEQ16778 126 aa11.77□□□□□ -0.52
CSPG4-201ENST00000308508 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.77□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms