RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 RSPO4Q2I0M5 234 aaPredicted RBP14.67□□□□□ -0.06
SYNPO-201ENST00000307662 MIR17HGQ75NE6 70 aa14.67□□□□□ -0.06
SYNPO-201ENST00000307662 GPX1P07203 203 aa14.66□□□□□ -0.06
SYNPO-201ENST00000307662 COX6A1P12074 109 aa14.66□□□□□ -0.06
SYNPO-201ENST00000307662 TMEM242Q9NWH2 141 aa14.66□□□□□ -0.06
SYNPO-201ENST00000307662 ACSF3Q4G176 576 aaPredicted RBP14.66□□□□□ -0.06
SYNPO-201ENST00000307662 FOXC2Q99958 501 aa14.66□□□□□ -0.06
SYNPO-201ENST00000307662 A0A1W2PQM1 296 aa14.66□□□□□ -0.06
SYNPO-201ENST00000307662 WFDC1Q9HC57 220 aa14.66□□□□□ -0.06
SYNPO-201ENST00000307662 SIPA1L1O43166 1804 aa14.66□□□□□ -0.06
SYNPO-201ENST00000307662 SCN10AQ9Y5Y9 1956 aa14.66□□□□□ -0.06
SYNPO-201ENST00000307662 FOXI3A8MTJ6 420 aaPredicted RBP14.65□□□□□ -0.06
SYNPO-201ENST00000307662 CCL20P78556 96 aa14.65□□□□□ -0.06
SYNPO-201ENST00000307662 Q6AWC8 147 aa14.65□□□□□ -0.06
SYNPO-201ENST00000307662 SHISA5Q8N114 240 aa14.65□□□□□ -0.06
SYNPO-201ENST00000307662 MRPS16Q9Y3D3 137 aaKnown RBP14.65□□□□□ -0.06
SYNPO-201ENST00000307662 BRWD3Q6RI45 1802 aa14.65□□□□□ -0.06
SYNPO-201ENST00000307662 HIGD1CA8MV81 97 aa14.65□□□□□ -0.06
SYNPO-201ENST00000307662 PCOLCEQ15113 449 aa14.65□□□□□ -0.06
SYNPO-201ENST00000307662 MEIG1Q5JSS6 88 aa14.65□□□□□ -0.06
SYNPO-201ENST00000307662 DNM1P46Q6ZS02 220 aa14.65□□□□□ -0.06
SYNPO-201ENST00000307662 GFI1Q99684 422 aa14.65□□□□□ -0.06
SYNPO-201ENST00000307662 CABIN1Q9Y6J0 2220 aa14.65□□□□□ -0.06
SYNPO-201ENST00000307662 ARID2Q68CP9 1835 aa14.65□□□□□ -0.06
SYNPO-201ENST00000307662 TMEM170BQ5T4T1 132 aa14.65□□□□□ -0.06
SYNPO-201ENST00000307662 AICDAQ9GZX7 198 aa14.65□□□□□ -0.06
SYNPO-201ENST00000307662 TRBV24-1A0A075B6N3 115 aa14.65□□□□□ -0.06
SYNPO-201ENST00000307662 IGKV3D-15A0A087WSY6 115 aa14.65□□□□□ -0.06
SYNPO-201ENST00000307662 IGKV3-15P01624 115 aa14.65□□□□□ -0.06
SYNPO-201ENST00000307662 CXCL1P09341 107 aa14.64□□□□□ -0.07
SYNPO-201ENST00000307662 OR10J3Q5JRS4 329 aa14.64□□□□□ -0.07
SYNPO-201ENST00000307662 ZNF436-AS1Q8NC38 126 aaPredicted RBP14.64□□□□□ -0.07
SYNPO-201ENST00000307662 OSR1Q8TAX0 266 aaPredicted RBP14.64□□□□□ -0.07
SYNPO-201ENST00000307662 RNASE7Q9H1E1 156 aaKnown RBP14.64□□□□□ -0.07
SYNPO-201ENST00000307662 TMEM74BQ9NUR3 256 aa14.64□□□□□ -0.07
SYNPO-201ENST00000307662 ACP7Q6ZNF0 438 aa14.64□□□□□ -0.07
SYNPO-201ENST00000307662 NPIPB11E5RHQ5 1161 aa14.64□□□□□ -0.07
SYNPO-201ENST00000307662 AMBPP02760 352 aa14.64□□□□□ -0.07
SYNPO-201ENST00000307662 GFI1BQ5VTD9 330 aa14.64□□□□□ -0.07
SYNPO-201ENST00000307662 TEX45Q8NA69 505 aa14.64□□□□□ -0.07
SYNPO-201ENST00000307662 OR52E5Q8NH55 327 aa14.64□□□□□ -0.07
SYNPO-201ENST00000307662 GEMIN7Q9H840 131 aaKnown RBP14.64□□□□□ -0.07
SYNPO-201ENST00000307662 LPAR2Q9HBW0 351 aa14.64□□□□□ -0.07
SYNPO-201ENST00000307662 TRAV24A0A0B4J272 114 aa14.63□□□□□ -0.07
SYNPO-201ENST00000307662 WDR82Q6UXN9 313 aa14.63□□□□□ -0.07
SYNPO-201ENST00000307662 MEGF9Q9H1U4 602 aa14.63□□□□□ -0.07
SYNPO-201ENST00000307662 GAS1P54826 345 aa14.63□□□□□ -0.07
SYNPO-201ENST00000307662 ZNF56Q15929 161 aa14.63□□□□□ -0.07
SYNPO-201ENST00000307662 ORMDL3Q8N138 153 aa14.63□□□□□ -0.07
SYNPO-201ENST00000307662 A0A087WV48 116 aa14.63□□□□□ -0.07
SYNPO-201ENST00000307662 PGPEP1LA6NFU8 196 aa14.63□□□□□ -0.07
SYNPO-201ENST00000307662 PF4V1P10720 104 aa14.63□□□□□ -0.07
SYNPO-201ENST00000307662 NUTF2P61970 127 aaKnown RBP14.63□□□□□ -0.07
SYNPO-201ENST00000307662 FNDC4Q9H6D8 234 aaPredicted RBP14.63□□□□□ -0.07
SYNPO-201ENST00000307662 A6NNC1 897 aa14.63□□□□□ -0.07
SYNPO-201ENST00000307662 TYMSP04818 313 aa14.63□□□□□ -0.07
SYNPO-201ENST00000307662 Q5PR19 223 aa14.63□□□□□ -0.07
SYNPO-201ENST00000307662 OR4X2Q8NGF9 303 aa14.63□□□□□ -0.07
SYNPO-201ENST00000307662 GNB1LQ9BYB4 327 aa14.63□□□□□ -0.07
SYNPO-201ENST00000307662 EPOPA6NHQ4 379 aa14.62□□□□□ -0.07
SYNPO-201ENST00000307662 TNFSF13O75888 250 aa14.62□□□□□ -0.07
SYNPO-201ENST00000307662 DNAL4O96015 105 aa14.62□□□□□ -0.07
SYNPO-201ENST00000307662 STARD6P59095 220 aa14.62□□□□□ -0.07
SYNPO-201ENST00000307662 SCGB3A1Q96QR1 104 aa14.62□□□□□ -0.07
SYNPO-201ENST00000307662 OSTCQ9NRP0 149 aa14.62□□□□□ -0.07
SYNPO-201ENST00000307662 CYTL1Q9NRR1 136 aa14.62□□□□□ -0.07
SYNPO-201ENST00000307662 TRBV6-7A0A0A0MS04 114 aa14.62□□□□□ -0.07
SYNPO-201ENST00000307662 PPIAL4CA0A0B4J2A2 164 aa14.62□□□□□ -0.07
SYNPO-201ENST00000307662 PPIAL4GP0DN37 164 aa14.62□□□□□ -0.07
SYNPO-201ENST00000307662 ZNF257Q9Y2Q1 563 aa14.62□□□□□ -0.07
SYNPO-201ENST00000307662 RNASE1P07998 156 aaKnown RBP14.62□□□□□ -0.07
SYNPO-201ENST00000307662 LDLRAD2Q5SZI1 272 aa14.62□□□□□ -0.07
SYNPO-201ENST00000307662 FAM74A4Q5TZK3 123 aa14.62□□□□□ -0.07
SYNPO-201ENST00000307662 CIARTQ8N365 385 aaPredicted RBP14.62□□□□□ -0.07
SYNPO-201ENST00000307662 ZNRF1Q8ND25 227 aa14.62□□□□□ -0.07
SYNPO-201ENST00000307662 MBD3L1Q8WWY6 194 aa14.62□□□□□ -0.07
SYNPO-201ENST00000307662 C1QTNF5Q9BXJ0 243 aa14.62□□□□□ -0.07
SYNPO-201ENST00000307662 DNASE2BQ8WZ79 361 aa14.62□□□□□ -0.07
SYNPO-201ENST00000307662 CLEC7AQ9BXN2 247 aa14.62□□□□□ -0.07
SYNPO-201ENST00000307662 PRR32B1ATL7 298 aa14.61□□□□□ -0.07
SYNPO-201ENST00000307662 NPPCP23582 126 aa14.61□□□□□ -0.07
SYNPO-201ENST00000307662 OR5A1Q8NGJ0 315 aa14.61□□□□□ -0.07
SYNPO-201ENST00000307662 CACNG8Q8WXS5 425 aa14.61□□□□□ -0.07
SYNPO-201ENST00000307662 A0A1B0GW64 132 aa14.61□□□□□ -0.07
SYNPO-201ENST00000307662 A0A1W2PRS3 328 aa14.61□□□□□ -0.07
SYNPO-201ENST00000307662 PPP1R17O96001 155 aa14.61□□□□□ -0.07
SYNPO-201ENST00000307662 ID3Q02535 119 aa14.61□□□□□ -0.07
SYNPO-201ENST00000307662 DOCK3Q8IZD9 2030 aa14.61□□□□□ -0.07
SYNPO-201ENST00000307662 LYPD3O95274 346 aa14.61□□□□□ -0.07
SYNPO-201ENST00000307662 FAM89BQ8N5H3 189 aa14.61□□□□□ -0.07
SYNPO-201ENST00000307662 SAP25Q8TEE9 199 aa14.61□□□□□ -0.07
SYNPO-201ENST00000307662 DDB2Q92466 427 aa14.61□□□□□ -0.07
SYNPO-201ENST00000307662 CHODLQ9H9P2 273 aa14.61□□□□□ -0.07
SYNPO-201ENST00000307662 IGKV1D-13A0A0B4J2D9 117 aa14.61□□□□□ -0.07
SYNPO-201ENST00000307662 IGKV1-13P0DP09 117 aa14.61□□□□□ -0.07
SYNPO-201ENST00000307662 ATP5G2Q06055 141 aa14.61□□□□□ -0.07
SYNPO-201ENST00000307662 PAQR4Q8N4S7 273 aaPredicted RBP14.61□□□□□ -0.07
SYNPO-201ENST00000307662 OR13A1Q8NGR1 328 aa14.61□□□□□ -0.07
SYNPO-201ENST00000307662 MOB4Q9Y3A3 225 aa14.61□□□□□ -0.07
SYNPO-201ENST00000307662 TGFBR3LH3BV60 316 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms