RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 DTX4Q9Y2E6 619 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 DLL1O00548 723 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 OPRM1P35372 400 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 GFRA1P56159 465 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 C2orf83Q53S99 150 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 ACTL10Q5JWF8 245 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 IBA57Q5T440 356 aaKnown RBP4.5□□□□□ -1.69
SCN1A-201ENST00000303395 NEU1Q99519 415 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 TOMM7Q9P0U1 55 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 PILRAQ9UKJ1 303 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 TRBV20-1A0A075B6N2 111 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 LINC00587B1AMM8 73 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 VWC2LB2RUY7 222 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 CKS1BP61024 79 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 TNFRSF9Q07011 255 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 TMEFF1Q8IYR6 380 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 HIST1H2BLQ99880 126 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 OPN3Q9H1Y3 402 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-201ENST00000303395 JPT2Q9H910 190 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 GPR27Q9NS67 375 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 SPINT1O43278 529 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 SRSF10O75494 262 aaKnown RBP4.5□□□□□ -1.69
SCN1A-201ENST00000303395 NGFP01138 241 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 RLFQ13129 1914 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 MRAPQ8TCY5 172 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 LOXL2Q9Y4K0 774 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 A1L4Q6 167 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 B4GALT3O60512 393 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 IGLV3-19P01714 112 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 EGR4Q05215 589 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 TTC9CQ8N5M4 171 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 RNF186Q9NXI6 227 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 PAM16Q9Y3D7 125 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 CHTOPQ9Y3Y2 248 aaKnown RBP4.5□□□□□ -1.69
SCN1A-201ENST00000303395 TRGV5A0A0B4J1U4 118 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 TMEM189A5PLL7 270 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 UPK2O00526 184 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 CEACAM4O75871 244 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 SMIM13P0DJ93 91 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 HSPE1P61604 102 aaKnown RBP4.5□□□□□ -1.69
SCN1A-201ENST00000303395 FAM159AQ6UWV7 190 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 WIPF2Q8TF74 440 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-201ENST00000303395 MEGF9Q9H1U4 602 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 HIGD1AQ9Y241 93 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 PLXNB2O15031 1838 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 PDLIM4P50479 330 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 GAS1P54826 345 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 SOX8P57073 446 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 UBE2V1Q13404 147 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 FAM27D1Q5T7N8 215 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 ATOH7Q8N100 152 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 PYGO2Q9BRQ0 406 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 CACNG4Q9UBN1 327 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 CCDC168Q8NDH2 2452 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 A0A1W2PPV9 198 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 H3BMM0 161 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 SP9P0CG40 484 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 FAM74A4Q5TZK3 123 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 ADAD2Q8NCV1 583 aaKnown RBP4.49□□□□□ -1.69
SCN1A-201ENST00000303395 UBE2WQ96B02 151 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 YAE1D1Q9NRH1 226 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 MBD1Q9UIS9 605 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-201ENST00000303395 CLPSL1A2RUU4 121 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 PSG2P11465 335 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 YPEL3P61236 119 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-201ENST00000303395 PDE6HQ13956 83 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-201ENST00000303395 OR2H1Q9GZK4 316 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 DNAJC4Q9NNZ3 241 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 ESDP10768 282 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 HTN3P15516 51 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 LEPP41159 167 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 TFPI2P48307 235 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 FAM78AQ5JUQ0 283 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 SPATA46Q5T0L3 261 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 CENPVQ7Z7K6 275 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-201ENST00000303395 OR51G1Q8NGK1 321 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 OR9G1Q8NH87 305 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 PAXXQ9BUH6 204 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 H3BQ85 93 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 SEC61GP60059 68 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 DCAF12L2Q5VW00 463 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 BCDIN3DQ7Z5W3 292 aaKnown RBP4.49□□□□□ -1.69
SCN1A-201ENST00000303395 MARCH3Q86UD3 253 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 MRPL18Q9H0U6 180 aaKnown RBP4.49□□□□□ -1.69
SCN1A-201ENST00000303395 CTGFP29279 349 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 TIMM23BQ5SRD1 257 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 OR2Y1Q8NGV0 311 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 A8MWP6 167 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 H3BP45 60 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 RAMP3O60896 148 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 ATP5G1P05496 136 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 ATP5G3P48201 142 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 ATP5G2Q06055 141 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 FOXF1Q12946 379 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 TMEM170BQ5T4T1 132 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 BCL6BQ8N143 479 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-201ENST00000303395 TMEM186Q96B77 213 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 C18orf12Q96KH6 178 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms