RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 HINT2Q9BX68 163 aa9.55□□□□□ -0.88
CD44-203ENST00000278386 COMMD9Q9P000 198 aa9.55□□□□□ -0.88
CD44-203ENST00000278386 KLK9Q9UKQ9 250 aa9.55□□□□□ -0.88
CD44-203ENST00000278386 IGHV3-21A0A0B4J1V1 117 aa9.54□□□□□ -0.88
CD44-203ENST00000278386 TRAV25A0A0B4J276 109 aa9.54□□□□□ -0.88
CD44-203ENST00000278386 OR2T8A6NH00 312 aa9.54□□□□□ -0.88
CD44-203ENST00000278386 MARCH11A6NNE9 402 aa9.54□□□□□ -0.88
CD44-203ENST00000278386 OR13C7P0DN81 318 aa9.54□□□□□ -0.88
CD44-203ENST00000278386 PMS2P11Q13670 270 aa9.54□□□□□ -0.88
CD44-203ENST00000278386 SLC25A24Q6NUK1 477 aa9.54□□□□□ -0.88
CD44-203ENST00000278386 SLC38A6Q8IZM9 456 aa9.54□□□□□ -0.88
CD44-203ENST00000278386 TMEM190Q8WZ59 177 aa9.54□□□□□ -0.88
CD44-203ENST00000278386 BORCS5Q969J3 196 aa9.54□□□□□ -0.88
CD44-203ENST00000278386 YTHDF1Q9BYJ9 559 aaKnown RBP9.54□□□□□ -0.88
CD44-203ENST00000278386 PLEKHA2Q9HB19 425 aa9.54□□□□□ -0.88
CD44-203ENST00000278386 MRPL27Q9P0M9 148 aaKnown RBP9.54□□□□□ -0.88
CD44-203ENST00000278386 UBQLN2Q9UHD9 624 aa9.54□□□□□ -0.88
CD44-203ENST00000278386 TRAPPC2P0DI81 140 aa9.53□□□□□ -0.88
CD44-203ENST00000278386 TRAPPC2BP0DI82 140 aa9.53□□□□□ -0.88
CD44-203ENST00000278386 PTBP1P26599 531 aaKnown RBP eCLIP9.53□□□□□ -0.883e-6■■■■■ 30.2
CD44-203ENST00000278386 ELLP55199 621 aaPredicted RBP9.53□□□□□ -0.88
CD44-203ENST00000278386 OR2C3Q8N628 320 aa9.53□□□□□ -0.88
CD44-203ENST00000278386 UBAC2Q8NBM4 344 aa9.53□□□□□ -0.88
CD44-203ENST00000278386 TSPAN14Q8NG11 270 aa9.53□□□□□ -0.88
CD44-203ENST00000278386 OR1L8Q8NGR8 309 aa9.53□□□□□ -0.88
CD44-203ENST00000278386 GIMAP1Q8WWP7 306 aa9.53□□□□□ -0.88
CD44-203ENST00000278386 OVOL2Q9BRP0 275 aa9.53□□□□□ -0.88
CD44-203ENST00000278386 ZNF2Q9BSG1 426 aaPredicted RBP9.53□□□□□ -0.88
CD44-203ENST00000278386 ZNF436Q9C0F3 470 aaPredicted RBP9.53□□□□□ -0.88
CD44-203ENST00000278386 CXorf65A6NEN9 183 aa9.52□□□□□ -0.89
CD44-203ENST00000278386 FGF2P09038 288 aa9.52□□□□□ -0.89
CD44-203ENST00000278386 C8orf88P0DMB2 117 aa9.52□□□□□ -0.89
CD44-203ENST00000278386 APOC4P55056 127 aa9.52□□□□□ -0.89
CD44-203ENST00000278386 WT1-ASQ06250 92 aa9.52□□□□□ -0.89
CD44-203ENST00000278386 UBE2NLQ5JXB2 153 aa9.52□□□□□ -0.89
CD44-203ENST00000278386 HSD17B13Q7Z5P4 300 aaPredicted RBP9.52□□□□□ -0.89
CD44-203ENST00000278386 OR5H2Q8NGV7 314 aa9.52□□□□□ -0.89
CD44-203ENST00000278386 VN1R17PQ8TDU5 208 aa9.52□□□□□ -0.89
CD44-203ENST00000278386 LSM10Q969L4 123 aaKnown RBP9.52□□□□□ -0.89
CD44-203ENST00000278386 BSCL2Q96G97 398 aaPredicted RBP9.52□□□□□ -0.89
CD44-203ENST00000278386 SPAG8Q99932 426 aaPredicted RBP9.52□□□□□ -0.89
CD44-203ENST00000278386 C20orf24Q9BUV8 137 aa9.52□□□□□ -0.89
CD44-203ENST00000278386 FXYD6Q9H0Q3 95 aa9.52□□□□□ -0.89
CD44-203ENST00000278386 DAZ1Q9NQZ3 744 aaKnown RBP9.52□□□□□ -0.89
CD44-203ENST00000278386 NSG2Q9Y328 171 aa9.52□□□□□ -0.89
CD44-203ENST00000278386 OR51B2Q9Y5P1 312 aa9.52□□□□□ -0.89
CD44-203ENST00000278386 IGHV3OR16-8A0A075B7F1 116 aa9.51□□□□□ -0.89
CD44-203ENST00000278386 A0A0J9YWU9 116 aa9.51□□□□□ -0.89
CD44-203ENST00000278386 TEX50A0A1B0GTY4 177 aa9.51□□□□□ -0.89
CD44-203ENST00000278386 XRCC3O43542 346 aa9.51□□□□□ -0.89
CD44-203ENST00000278386 ZNF207O43670 478 aaKnown RBP9.51□□□□□ -0.89
CD44-203ENST00000278386 SNAPC5O75971 98 aa9.51□□□□□ -0.89
CD44-203ENST00000278386 KRASP01116 189 aa9.51□□□□□ -0.89
CD44-203ENST00000278386 PMP2P02689 132 aa9.51□□□□□ -0.89
CD44-203ENST00000278386 SERPINE2P07093 398 aa9.51□□□□□ -0.89
CD44-203ENST00000278386 F2RP25116 425 aa9.51□□□□□ -0.89
CD44-203ENST00000278386 GNRHRP30968 328 aa9.51□□□□□ -0.89
CD44-203ENST00000278386 G6PCP35575 357 aa9.51□□□□□ -0.89
CD44-203ENST00000278386 TGFBR1P36897 503 aa9.51□□□□□ -0.89
CD44-203ENST00000278386 LPAR6P43657 344 aa9.51□□□□□ -0.89
CD44-203ENST00000278386 RFX2P48378 723 aa9.51□□□□□ -0.89
CD44-203ENST00000278386 TAS2R46P59540 309 aa9.51□□□□□ -0.89
CD44-203ENST00000278386 TAS2R20P59543 309 aa9.51□□□□□ -0.89
CD44-203ENST00000278386 DEFB135Q30KP9 77 aa9.51□□□□□ -0.89
CD44-203ENST00000278386 Q56UQ5 140 aa9.51□□□□□ -0.89
CD44-203ENST00000278386 TMEM69Q5SWH9 247 aa9.51□□□□□ -0.89
CD44-203ENST00000278386 LAMTOR1Q6IAA8 161 aa9.51□□□□□ -0.89
CD44-203ENST00000278386 CMTM1Q8IZ96 169 aa9.51□□□□□ -0.89
CD44-203ENST00000278386 MOB3AQ96BX8 217 aa9.51□□□□□ -0.89
CD44-203ENST00000278386 S100A16Q96FQ6 103 aaKnown RBP9.51□□□□□ -0.89
CD44-203ENST00000278386 C5orf66Q9H5L9 145 aa9.51□□□□□ -0.89
CD44-203ENST00000278386 C21orf62Q9NYP8 219 aa9.51□□□□□ -0.89
CD44-203ENST00000278386 F11RQ9Y624 299 aaKnown RBP9.51□□□□□ -0.89
CD44-203ENST00000278386 TSPAN4O14817 238 aa9.5□□□□□ -0.89
CD44-203ENST00000278386 TMEM127O75204 238 aa9.5□□□□□ -0.89
CD44-203ENST00000278386 SPSB3Q6PJ21 355 aa9.5□□□□□ -0.89
CD44-203ENST00000278386 CROCCP3Q8IVE0 287 aa9.5□□□□□ -0.89
CD44-203ENST00000278386 SAMD12Q8N8I0 201 aa9.5□□□□□ -0.89
CD44-203ENST00000278386 FCAMRQ8WWV6 532 aa9.5□□□□□ -0.89
CD44-203ENST00000278386 LINC00476Q8WZB0 136 aa9.5□□□□□ -0.89
CD44-203ENST00000278386 DGCR14Q96DF8 476 aaKnown RBP9.5□□□□□ -0.89
CD44-203ENST00000278386 CHRDL1Q9BU40 450 aa9.5□□□□□ -0.89
CD44-203ENST00000278386 NDUFA4L2Q9NRX3 87 aa9.5□□□□□ -0.89
CD44-203ENST00000278386 NUPR2A6NF83 97 aa9.49□□□□□ -0.89
CD44-203ENST00000278386 OR4C46A6NHA9 309 aa9.49□□□□□ -0.89
CD44-203ENST00000278386 GPR31O00270 319 aa9.49□□□□□ -0.89
CD44-203ENST00000278386 NDUFA4O00483 81 aa9.49□□□□□ -0.89
CD44-203ENST00000278386 SPRY2O43597 315 aa9.49□□□□□ -0.89
CD44-203ENST00000278386 PGLYRP1O75594 196 aaPredicted RBP9.49□□□□□ -0.89
CD44-203ENST00000278386 MFAP2P55001 183 aa9.49□□□□□ -0.89
CD44-203ENST00000278386 PHLDA2Q53GA4 152 aa9.49□□□□□ -0.89
CD44-203ENST00000278386 LYG2Q86SG7 212 aa9.49□□□□□ -0.89
CD44-203ENST00000278386 TMEM56Q96MV1 263 aa9.49□□□□□ -0.89
CD44-203ENST00000278386 PRNDQ9UKY0 176 aa9.49□□□□□ -0.89
CD44-203ENST00000278386 TP53TG1Q9Y2A0 90 aa9.49□□□□□ -0.89
CD44-203ENST00000278386 C15orf61A6NNL5 157 aa9.48□□□□□ -0.89
CD44-203ENST00000278386 LY6G6CO95867 125 aa9.48□□□□□ -0.89
CD44-203ENST00000278386 CTSDP07339 412 aaPredicted RBP9.48□□□□□ -0.89
CD44-203ENST00000278386 RPL35AP18077 110 aaKnown RBP9.48□□□□□ -0.89
CD44-203ENST00000278386 S100GP29377 79 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms