RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 NPBQ8NG41 125 aa11.3□□□□□ -0.6
SS18-201ENST00000269137 EAF1Q96JC9 268 aaPredicted RBP11.3□□□□□ -0.6
SS18-201ENST00000269137 TPSG1Q9NRR2 321 aa11.3□□□□□ -0.6
SS18-201ENST00000269137 RRHO14718 337 aa11.3□□□□□ -0.6
SS18-201ENST00000269137 ATP6V1FQ16864 119 aa11.3□□□□□ -0.6
SS18-201ENST00000269137 PPP1R27Q86WC6 154 aa11.3□□□□□ -0.6
SS18-201ENST00000269137 Q8N6K4 173 aa11.3□□□□□ -0.6
SS18-201ENST00000269137 METTL1Q9UBP6 276 aaKnown RBP11.3□□□□□ -0.6
SS18-201ENST00000269137 CSPG4Q6UVK1 2322 aa11.29□□□□□ -0.6
SS18-201ENST00000269137 J3QLI3 93 aa11.29□□□□□ -0.6
SS18-201ENST00000269137 NDUFA3O95167 84 aa11.29□□□□□ -0.6
SS18-201ENST00000269137 IFNA10P01566 189 aa11.29□□□□□ -0.6
SS18-201ENST00000269137 SNRNP70P08621 437 aaKnown RBP11.29□□□□□ -0.6
SS18-201ENST00000269137 PAX6P26367 422 aa11.29□□□□□ -0.6
SS18-201ENST00000269137 BRS3P32247 399 aa11.29□□□□□ -0.6
SS18-201ENST00000269137 F2RL1P55085 397 aa11.29□□□□□ -0.6
SS18-201ENST00000269137 SLC38A11Q08AI6 406 aa11.29□□□□□ -0.6
SS18-201ENST00000269137 PJVKQ0ZLH3 352 aa11.29□□□□□ -0.6
SS18-201ENST00000269137 HSD17B13Q7Z5P4 300 aaPredicted RBP11.29□□□□□ -0.6
SS18-201ENST00000269137 OR10P1Q8NGE3 313 aa11.29□□□□□ -0.6
SS18-201ENST00000269137 LRRC20Q8TCA0 184 aa11.29□□□□□ -0.6
SS18-201ENST00000269137 TMED6Q8WW62 240 aa11.29□□□□□ -0.6
SS18-201ENST00000269137 PINX1Q96BK5 328 aaKnown RBP11.29□□□□□ -0.6
SS18-201ENST00000269137 Q96MF0 132 aa11.29□□□□□ -0.6
SS18-201ENST00000269137 HINT2Q9BX68 163 aa11.29□□□□□ -0.6
SS18-201ENST00000269137 CR1P17927 2039 aa11.29□□□□□ -0.6
SS18-201ENST00000269137 A0A1W2PN81 502 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 NBR2O15453 112 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 OPN1MWP04001 364 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 OPN1MW2P0DN77 364 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 OPN1MW3P0DN78 364 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 CHRNA7P36544 502 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 PRRC2AP48634 2157 aaKnown RBP11.28□□□□□ -0.6
SS18-201ENST00000269137 MMDQ15546 238 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 FAM74A1Q5RGS3 127 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 OR8G2PQ6IF36 304 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 EIF4E3Q8N5X7 224 aaKnown RBP11.28□□□□□ -0.6
SS18-201ENST00000269137 SLC24A4Q8NFF2 622 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 TMEM170AQ8WVE7 144 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 FBXL15Q9H469 300 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 ZANQ9Y493 2812 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 PDZD2O15018 2839 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 HECTD1Q9ULT8 2610 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 TRAV40A0A0B4J280 105 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 E7EUB6 86 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 IFNA5P01569 189 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 OR8U8P0C7N1 319 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 SEC11BP0C7V7 166 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 FAM106CPP0CH98 169 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 SPP1P10451 314 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 RAB11AP62491 216 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 HES1Q14469 280 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 HNF4GQ14541 408 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 TMEM249Q2WGJ8 235 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 BSXQ3C1V8 233 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 LILRB2Q8N423 598 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 PARD6GQ9BYG4 376 aaPredicted RBP11.28□□□□□ -0.6
SS18-201ENST00000269137 KIAA1456Q9P272 454 aa11.28□□□□□ -0.6
SS18-201ENST00000269137 SVEP1Q4LDE5 3571 aa11.27□□□□□ -0.6
SS18-201ENST00000269137 CGB1A6NKQ9 187 aa11.27□□□□□ -0.61
SS18-201ENST00000269137 ACTL6BO94805 426 aa11.27□□□□□ -0.61
SS18-201ENST00000269137 IGHV4-31P0DP07 118 aa11.27□□□□□ -0.61
SS18-201ENST00000269137 IGHV4-38-2P0DP08 117 aa11.27□□□□□ -0.61
SS18-201ENST00000269137 ZP3P21754 424 aa11.27□□□□□ -0.61
SS18-201ENST00000269137 CD24P25063 80 aa11.27□□□□□ -0.61
SS18-201ENST00000269137 NPY1RP25929 384 aa11.27□□□□□ -0.61
SS18-201ENST00000269137 COMPP49747 757 aaPredicted RBP11.27□□□□□ -0.61
SS18-201ENST00000269137 ERHP84090 104 aaKnown RBP11.27□□□□□ -0.61
SS18-201ENST00000269137 ETV3LQ6ZN32 361 aa11.27□□□□□ -0.61
SS18-201ENST00000269137 TMEM147Q9BVK8 224 aa11.27□□□□□ -0.61
SS18-201ENST00000269137 GGACTQ9BVM4 153 aa11.27□□□□□ -0.61
SS18-201ENST00000269137 ABCA1O95477 2261 aa11.27□□□□□ -0.61
SS18-201ENST00000269137 NAV3Q8IVL0 2385 aa11.26□□□□□ -0.61
SS18-201ENST00000269137 A0A1B0GW64 132 aa11.26□□□□□ -0.61
SS18-201ENST00000269137 PRSS46E5RG02 174 aa11.26□□□□□ -0.61
SS18-201ENST00000269137 FBXO24O75426 580 aa11.26□□□□□ -0.61
SS18-201ENST00000269137 CA2P00918 260 aa11.26□□□□□ -0.61
SS18-201ENST00000269137 TGFAP01135 160 aa11.26□□□□□ -0.61
SS18-201ENST00000269137 FAM157CP0CG43 387 aa11.26□□□□□ -0.61
SS18-201ENST00000269137 RPL27AP46776 148 aaKnown RBP11.26□□□□□ -0.61
SS18-201ENST00000269137 C5orf64Q2M2E5 130 aa11.26□□□□□ -0.61
SS18-201ENST00000269137 VWC2Q2TAL6 325 aa11.26□□□□□ -0.61
SS18-201ENST00000269137 FBLN7Q53RD9 439 aa11.26□□□□□ -0.61
SS18-201ENST00000269137 C2orf83Q53S99 150 aa11.26□□□□□ -0.61
SS18-201ENST00000269137 C10orf55Q5SWW7 151 aa11.26□□□□□ -0.61
SS18-201ENST00000269137 RUSC1-AS1Q66K80 236 aa11.26□□□□□ -0.61
SS18-201ENST00000269137 MRPL41Q8IXM3 137 aaKnown RBP11.26□□□□□ -0.61
SS18-201ENST00000269137 HSD17B11Q8NBQ5 300 aa11.26□□□□□ -0.61
SS18-201ENST00000269137 MAPK1IP1LQ8NDC0 245 aa11.26□□□□□ -0.61
SS18-201ENST00000269137 OR10W1Q8NGF6 305 aa11.26□□□□□ -0.61
SS18-201ENST00000269137 GNPNAT1Q96EK6 184 aaPredicted RBP11.26□□□□□ -0.61
SS18-201ENST00000269137 MEGF9Q9H1U4 602 aa11.26□□□□□ -0.61
SS18-201ENST00000269137 ITPR3Q14573 2671 aa11.26□□□□□ -0.61
SS18-201ENST00000269137 IGHV3OR16-10A0A075B7F0 116 aa11.25□□□□□ -0.61
SS18-201ENST00000269137 FGF16O43320 207 aa11.25□□□□□ -0.61
SS18-201ENST00000269137 AVPP01185 164 aa11.25□□□□□ -0.61
SS18-201ENST00000269137 ATP6V0CP27449 155 aa11.25□□□□□ -0.61
SS18-201ENST00000269137 PLGLAQ15195 96 aa11.25□□□□□ -0.61
SS18-201ENST00000269137 TNXAQ16473 311 aa11.25□□□□□ -0.61
SS18-201ENST00000269137 LRRC75BQ2VPJ9 315 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms