RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 CPAMD8Q8IZJ3 1885 aa9.49□□□□□ -0.89
VPS4A-201ENST00000254950 SMAD7O15105 426 aaKnown RBP9.49□□□□□ -0.89
VPS4A-201ENST00000254950 C1QL1O75973 258 aa9.49□□□□□ -0.89
VPS4A-201ENST00000254950 LINC00205P59089 165 aa9.49□□□□□ -0.89
VPS4A-201ENST00000254950 BTN1A1Q13410 526 aa9.49□□□□□ -0.89
VPS4A-201ENST00000254950 TUSC1Q2TAM9 212 aa9.49□□□□□ -0.89
VPS4A-201ENST00000254950 SLC16A13Q7RTY0 426 aa9.49□□□□□ -0.89
VPS4A-201ENST00000254950 OR1B1Q8NGR6 318 aa9.49□□□□□ -0.89
VPS4A-201ENST00000254950 HIVEP3Q5T1R4 2406 aa9.49□□□□□ -0.89
VPS4A-201ENST00000254950 TRAV40A0A0B4J280 105 aa9.49□□□□□ -0.89
VPS4A-201ENST00000254950 IGHV1-3A0A0C4DH29 117 aa9.49□□□□□ -0.89
VPS4A-201ENST00000254950 MDFIC2A0A1B0GVS7 189 aa9.49□□□□□ -0.89
VPS4A-201ENST00000254950 BUB1B-PAK6H3BSN5 160 aa9.49□□□□□ -0.89
VPS4A-201ENST00000254950 DTX2Q86UW9 622 aa9.49□□□□□ -0.89
VPS4A-201ENST00000254950 OR52E5Q8NH55 327 aa9.49□□□□□ -0.89
VPS4A-201ENST00000254950 GGACTQ9BVM4 153 aa9.49□□□□□ -0.89
VPS4A-201ENST00000254950 KIAA1324LA8MWY0 1029 aaPredicted RBP9.49□□□□□ -0.89
VPS4A-201ENST00000254950 MT-ND4LP03901 98 aa9.49□□□□□ -0.89
VPS4A-201ENST00000254950 UBE2G1P62253 170 aa9.49□□□□□ -0.89
VPS4A-201ENST00000254950 ZNF430Q9H8G1 570 aaPredicted RBP9.49□□□□□ -0.89
VPS4A-201ENST00000254950 RBFOX3A6NFN3 312 aa9.48□□□□□ -0.89
VPS4A-201ENST00000254950 H0YJW9 148 aa9.48□□□□□ -0.89
VPS4A-201ENST00000254950 MAS1LP35410 378 aa9.48□□□□□ -0.89
VPS4A-201ENST00000254950 WDR61Q9GZS3 305 aaKnown RBP9.48□□□□□ -0.89
VPS4A-201ENST00000254950 TMEM167BQ9NRX6 74 aa9.48□□□□□ -0.89
VPS4A-201ENST00000254950 MMP23AO75900 390 aa9.48□□□□□ -0.89
VPS4A-201ENST00000254950 CD24P25063 80 aa9.48□□□□□ -0.89
VPS4A-201ENST00000254950 AKR1D1P51857 326 aa9.48□□□□□ -0.89
VPS4A-201ENST00000254950 OR4F17Q8NGA8 305 aa9.48□□□□□ -0.89
VPS4A-201ENST00000254950 OR4P4Q8NGL7 312 aa9.48□□□□□ -0.89
VPS4A-201ENST00000254950 PSMG3Q9BT73 122 aaPredicted RBP9.48□□□□□ -0.89
VPS4A-201ENST00000254950 TOLLIPQ9H0E2 274 aa9.48□□□□□ -0.89
VPS4A-201ENST00000254950 SLC35B3Q9H1N7 401 aa9.48□□□□□ -0.89
VPS4A-201ENST00000254950 TIMM9Q9Y5J7 89 aa9.48□□□□□ -0.89
VPS4A-201ENST00000254950 UBE2L3P68036 154 aaKnown RBP9.48□□□□□ -0.89
VPS4A-201ENST00000254950 TIGITQ495A1 244 aa9.48□□□□□ -0.89
VPS4A-201ENST00000254950 RBM14Q96PK6 669 aaKnown RBP9.48□□□□□ -0.89
VPS4A-201ENST00000254950 GAB2Q9UQC2 676 aa9.48□□□□□ -0.89
VPS4A-201ENST00000254950 M0QZ24 198 aa9.47□□□□□ -0.89
VPS4A-201ENST00000254950 SFTA3P0C7M3 94 aa9.47□□□□□ -0.89
VPS4A-201ENST00000254950 PRCDQ00LT1 54 aa9.47□□□□□ -0.89
VPS4A-201ENST00000254950 MIC13Q5XKP0 118 aa9.47□□□□□ -0.89
VPS4A-201ENST00000254950 SLC35E3Q7Z769 313 aa9.47□□□□□ -0.89
VPS4A-201ENST00000254950 BEND2Q8NDZ0 799 aa9.47□□□□□ -0.89
VPS4A-201ENST00000254950 RNF5Q99942 180 aa9.47□□□□□ -0.89
VPS4A-201ENST00000254950 SPOCK3Q9BQ16 436 aa9.47□□□□□ -0.89
VPS4A-201ENST00000254950 GINS3Q9BRX5 216 aa9.47□□□□□ -0.89
VPS4A-201ENST00000254950 C20orf24Q9BUV8 137 aa9.47□□□□□ -0.89
VPS4A-201ENST00000254950 SH3BGRL3Q9H299 93 aa9.47□□□□□ -0.89
VPS4A-201ENST00000254950 HIF1ANQ9NWT6 349 aa9.47□□□□□ -0.89
VPS4A-201ENST00000254950 PPP1R14DQ9NXH3 145 aa9.47□□□□□ -0.89
VPS4A-201ENST00000254950 ZNF257Q9Y2Q1 563 aa9.47□□□□□ -0.89
VPS4A-201ENST00000254950 A0A0G2JRQ6 117 aa9.47□□□□□ -0.89
VPS4A-201ENST00000254950 LINC00869P0C866 280 aa9.47□□□□□ -0.89
VPS4A-201ENST00000254950 C10orf113Q5VZT2 155 aa9.47□□□□□ -0.89
VPS4A-201ENST00000254950 LINC00311Q8N616 119 aa9.47□□□□□ -0.89
VPS4A-201ENST00000254950 SRSF12Q8WXF0 261 aaKnown RBP9.47□□□□□ -0.89
VPS4A-201ENST00000254950 ZNRD1Q9P1U0 126 aa9.47□□□□□ -0.89
VPS4A-201ENST00000254950 KIAA1549Q9HCM3 1950 aa9.47□□□□□ -0.89
VPS4A-201ENST00000254950 LOXL3P58215 753 aa9.47□□□□□ -0.89
VPS4A-201ENST00000254950 NPIPB3Q92617 1050 aa9.47□□□□□ -0.89
VPS4A-201ENST00000254950 MANBALQ9NQG1 85 aa9.47□□□□□ -0.89
VPS4A-201ENST00000254950 FOXA2Q9Y261 457 aaPredicted RBP9.47□□□□□ -0.89
VPS4A-201ENST00000254950 PCSK5Q92824 1860 aa9.46□□□□□ -0.89
VPS4A-201ENST00000254950 S100A9P06702 114 aaKnown RBP9.46□□□□□ -0.89
VPS4A-201ENST00000254950 MGST1P10620 155 aaKnown RBP9.46□□□□□ -0.89
VPS4A-201ENST00000254950 ZP3P21754 424 aa9.46□□□□□ -0.89
VPS4A-201ENST00000254950 AKR1C3P42330 323 aa9.46□□□□□ -0.89
VPS4A-201ENST00000254950 MFAP4P55083 255 aa9.46□□□□□ -0.89
VPS4A-201ENST00000254950 C15orf54Q8N8G6 183 aa9.46□□□□□ -0.89
VPS4A-201ENST00000254950 STXBP6Q8NFX7 210 aa9.46□□□□□ -0.89
VPS4A-201ENST00000254950 SMCO4Q9NRQ5 59 aa9.46□□□□□ -0.89
VPS4A-201ENST00000254950 PTPN13Q12923 2485 aa9.46□□□□□ -0.89
VPS4A-201ENST00000254950 HYPMO75409 117 aa9.46□□□□□ -0.89
VPS4A-201ENST00000254950 LRRC75BQ2VPJ9 315 aa9.46□□□□□ -0.89
VPS4A-201ENST00000254950 Q6ZRM9 215 aa9.46□□□□□ -0.89
VPS4A-201ENST00000254950 TMEM167AQ8TBQ9 72 aa9.46□□□□□ -0.89
VPS4A-201ENST00000254950 ARPC1AQ92747 370 aa9.46□□□□□ -0.89
VPS4A-201ENST00000254950 ZNF785A8K8V0 405 aa9.46□□□□□ -0.9
VPS4A-201ENST00000254950 RRHO14718 337 aa9.46□□□□□ -0.9
VPS4A-201ENST00000254950 DANCRP0C864 163 aa9.46□□□□□ -0.9
VPS4A-201ENST00000254950 PF4V1P10720 104 aa9.46□□□□□ -0.9
VPS4A-201ENST00000254950 PSG5Q15238 335 aa9.46□□□□□ -0.9
VPS4A-201ENST00000254950 TMEM177Q53S58 311 aa9.46□□□□□ -0.9
VPS4A-201ENST00000254950 PKD1L2Q7Z442 2459 aa9.46□□□□□ -0.9
VPS4A-201ENST00000254950 ZNF429Q86V71 674 aa9.46□□□□□ -0.9
VPS4A-201ENST00000254950 CACNG8Q8WXS5 425 aa9.46□□□□□ -0.9
VPS4A-201ENST00000254950 NKX6-2Q9C056 277 aaPredicted RBP9.46□□□□□ -0.9
VPS4A-201ENST00000254950 TBL2Q9Y4P3 447 aaKnown RBP9.46□□□□□ -0.9
VPS4A-201ENST00000254950 TRAV20A0A0B4J274 112 aa9.46□□□□□ -0.9
VPS4A-201ENST00000254950 CXorf1O96002 111 aa9.46□□□□□ -0.9
VPS4A-201ENST00000254950 PAX5Q02548 391 aa9.46□□□□□ -0.9
VPS4A-201ENST00000254950 KCNIP4Q6PIL6 250 aa9.46□□□□□ -0.9
VPS4A-201ENST00000254950 RNASEH2CQ8TDP1 164 aaKnown RBP9.46□□□□□ -0.9
VPS4A-201ENST00000254950 MARVELD3Q96A59 401 aa9.46□□□□□ -0.9
VPS4A-201ENST00000254950 MALSU1Q96EH3 234 aa9.46□□□□□ -0.9
VPS4A-201ENST00000254950 VAX2Q9UIW0 290 aa9.46□□□□□ -0.9
VPS4A-201ENST00000254950 ABCA1O95477 2261 aa9.45□□□□□ -0.9
VPS4A-201ENST00000254950 C22orf46C9J442 243 aa9.45□□□□□ -0.9
VPS4A-201ENST00000254950 NPFFO15130 113 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms