RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 KIAA0141Q14154 515 aaPredicted RBP11.29□□□□□ -0.6
LDLR-201ENST00000252444 PLSCR3Q9NRY6 295 aa11.29□□□□□ -0.6
LDLR-201ENST00000252444 CDC42EP3Q9UKI2 254 aa11.29□□□□□ -0.6
LDLR-201ENST00000252444 TSTD3H0UI37 97 aa11.29□□□□□ -0.6
LDLR-201ENST00000252444 BUB1B-PAK6H3BSN5 160 aa11.29□□□□□ -0.6
LDLR-201ENST00000252444 WISP1O95388 367 aa11.29□□□□□ -0.6
LDLR-201ENST00000252444 MSMBP08118 114 aa11.29□□□□□ -0.6
LDLR-201ENST00000252444 NHLH2Q02577 135 aa11.29□□□□□ -0.6
LDLR-201ENST00000252444 OR4D5Q8NGN0 318 aa11.29□□□□□ -0.6
LDLR-201ENST00000252444 MARVELD3Q96A59 401 aa11.29□□□□□ -0.6
LDLR-201ENST00000252444 IGHV1-3A0A0C4DH29 117 aa11.29□□□□□ -0.6
LDLR-201ENST00000252444 IGHV2-70DA0A0C4DH43 119 aa11.29□□□□□ -0.6
LDLR-201ENST00000252444 MEX3AA1L020 520 aaKnown RBP11.29□□□□□ -0.6
LDLR-201ENST00000252444 CXCL2P19875 107 aa11.29□□□□□ -0.6
LDLR-201ENST00000252444 OR5AU1Q8NGC0 362 aa11.29□□□□□ -0.6
LDLR-201ENST00000252444 A8MWL6 223 aa11.28□□□□□ -0.6
LDLR-201ENST00000252444 SRSF12Q8WXF0 261 aaKnown RBP11.28□□□□□ -0.6
LDLR-201ENST00000252444 TMEM18Q96B42 140 aa11.28□□□□□ -0.6
LDLR-201ENST00000252444 NABP2Q9BQ15 211 aa11.28□□□□□ -0.6
LDLR-201ENST00000252444 CCL3L1P16619 93 aa11.28□□□□□ -0.6
LDLR-201ENST00000252444 NUTF2P61970 127 aaKnown RBP11.28□□□□□ -0.6
LDLR-201ENST00000252444 FBXL15Q9H469 300 aa11.28□□□□□ -0.6
LDLR-201ENST00000252444 TRAV9-1A0A075B6T8 112 aa11.28□□□□□ -0.6
LDLR-201ENST00000252444 A0A1B0GW15 77 aa11.28□□□□□ -0.6
LDLR-201ENST00000252444 A0A1W2PNU3 283 aaPredicted RBP11.28□□□□□ -0.6
LDLR-201ENST00000252444 CXorf65A6NEN9 183 aa11.28□□□□□ -0.6
LDLR-201ENST00000252444 ZNF705FA8MVS1 300 aaPredicted RBP11.28□□□□□ -0.6
LDLR-201ENST00000252444 ZNF705DP0CH99 300 aaPredicted RBP11.28□□□□□ -0.6
LDLR-201ENST00000252444 ZNF705BP0CI00 300 aaPredicted RBP11.28□□□□□ -0.6
LDLR-201ENST00000252444 MEF2BQ02080 365 aaPredicted RBP11.28□□□□□ -0.6
LDLR-201ENST00000252444 TRBV7-1A0A0A6YYK4 115 aa11.28□□□□□ -0.6
LDLR-201ENST00000252444 MFSD2BA6NFX1 497 aa11.28□□□□□ -0.6
LDLR-201ENST00000252444 PF4P02776 101 aa11.28□□□□□ -0.6
LDLR-201ENST00000252444 PAX1P15863 534 aa11.28□□□□□ -0.6
LDLR-201ENST00000252444 BTCP35070 178 aa11.28□□□□□ -0.6
LDLR-201ENST00000252444 PRSS8Q16651 343 aa11.28□□□□□ -0.6
LDLR-201ENST00000252444 LRP4O75096 1905 aa11.28□□□□□ -0.6
LDLR-201ENST00000252444 CEP192Q8TEP8 1941 aa11.28□□□□□ -0.6
LDLR-201ENST00000252444 PAGE4O60829 102 aa11.28□□□□□ -0.6
LDLR-201ENST00000252444 FAM157CP0CG43 387 aa11.28□□□□□ -0.6
LDLR-201ENST00000252444 EGR1P18146 543 aa11.28□□□□□ -0.6
LDLR-201ENST00000252444 PRR30Q53SZ7 412 aaPredicted RBP11.28□□□□□ -0.6
LDLR-201ENST00000252444 FAM201AQ5SY85 155 aa11.28□□□□□ -0.6
LDLR-201ENST00000252444 SOX21Q9Y651 276 aaPredicted RBP11.28□□□□□ -0.6
LDLR-201ENST00000252444 ARL2-SNX15V9GYD0 113 aa11.28□□□□□ -0.6
LDLR-201ENST00000252444 H2BFSP57053 126 aa11.27□□□□□ -0.6
LDLR-201ENST00000252444 FA2HQ7L5A8 372 aa11.27□□□□□ -0.6
LDLR-201ENST00000252444 NPCDR1Q9BY65 106 aa11.27□□□□□ -0.6
LDLR-201ENST00000252444 COL4A2P08572 1712 aa11.27□□□□□ -0.61
LDLR-201ENST00000252444 COL8A1P27658 744 aa11.27□□□□□ -0.61
LDLR-201ENST00000252444 RANP62826 216 aaKnown RBP11.27□□□□□ -0.61
LDLR-201ENST00000252444 BSCL2Q96G97 398 aaPredicted RBP11.27□□□□□ -0.61
LDLR-201ENST00000252444 TRBV9A0A0B4J1U6 114 aa11.27□□□□□ -0.61
LDLR-201ENST00000252444 WT1P19544 449 aaPredicted RBP11.27□□□□□ -0.61
LDLR-201ENST00000252444 PRR27Q6MZM9 219 aa11.27□□□□□ -0.61
LDLR-201ENST00000252444 HCP5Q6MZN7 132 aa11.27□□□□□ -0.61
LDLR-201ENST00000252444 C5orf17Q8NAS9 161 aa11.27□□□□□ -0.61
LDLR-201ENST00000252444 IL36RNQ9UBH0 155 aa11.27□□□□□ -0.61
LDLR-201ENST00000252444 DUSP14O95147 198 aaKnown RBP11.27□□□□□ -0.61
LDLR-201ENST00000252444 IL6RP08887 468 aaPredicted RBP11.27□□□□□ -0.61
LDLR-201ENST00000252444 PAX6P26367 422 aa11.27□□□□□ -0.61
LDLR-201ENST00000252444 TM4SF20Q53R12 229 aa11.27□□□□□ -0.61
LDLR-201ENST00000252444 LEAP2Q969E1 77 aa11.27□□□□□ -0.61
LDLR-201ENST00000252444 COQ2Q96H96 371 aa11.27□□□□□ -0.61
LDLR-201ENST00000252444 ASCC3Q8N3C0 2202 aaKnown RBP11.26□□□□□ -0.61
LDLR-201ENST00000252444 LY6EQ16553 131 aa11.26□□□□□ -0.61
LDLR-201ENST00000252444 Q6AWC8 147 aa11.26□□□□□ -0.61
LDLR-201ENST00000252444 H0YJW9 148 aa11.26□□□□□ -0.61
LDLR-201ENST00000252444 H3BUA1 57 aa11.26□□□□□ -0.61
LDLR-201ENST00000252444 FABP9Q0Z7S8 132 aa11.26□□□□□ -0.61
LDLR-201ENST00000252444 LDLRAD3Q86YD5 345 aa11.26□□□□□ -0.61
LDLR-201ENST00000252444 TRAPPC1Q9Y5R8 145 aa11.26□□□□□ -0.61
LDLR-201ENST00000252444 CLRN3Q8NCR9 226 aa11.26□□□□□ -0.61
LDLR-201ENST00000252444 CLDND2Q8NHS1 167 aa11.26□□□□□ -0.61
LDLR-201ENST00000252444 TECTAO75443 2155 aa11.26□□□□□ -0.61
LDLR-201ENST00000252444 CD69Q07108 199 aa11.26□□□□□ -0.61
LDLR-201ENST00000252444 ZNF506Q5JVG8 444 aa11.26□□□□□ -0.61
LDLR-201ENST00000252444 LRRC75A-AS1Q8N1F1 130 aa11.26□□□□□ -0.61
LDLR-201ENST00000252444 TIMM23O14925 209 aa11.25□□□□□ -0.61
LDLR-201ENST00000252444 SMAD7O15105 426 aaKnown RBP11.25□□□□□ -0.61
LDLR-201ENST00000252444 SIGLECL1Q8N7X8 197 aa11.25□□□□□ -0.61
LDLR-201ENST00000252444 FMC1Q96HJ9 113 aa11.25□□□□□ -0.61
LDLR-201ENST00000252444 PSPNO60542 156 aa11.25□□□□□ -0.61
LDLR-201ENST00000252444 TRAV41A0A0B4J266 112 aa11.25□□□□□ -0.61
LDLR-201ENST00000252444 TCRBV4S1A1TA0A5B7 111 aa11.25□□□□□ -0.61
LDLR-201ENST00000252444 SHISA9B4DS77 424 aa11.25□□□□□ -0.61
LDLR-201ENST00000252444 ZNF833PQ6ZTB9 187 aa11.25□□□□□ -0.61
LDLR-201ENST00000252444 SSX7Q7RTT5 188 aa11.25□□□□□ -0.61
LDLR-201ENST00000252444 ZNF738Q8NE65 137 aa11.25□□□□□ -0.61
LDLR-201ENST00000252444 IGKV1D-13A0A0B4J2D9 117 aa11.25□□□□□ -0.61
LDLR-201ENST00000252444 PPP1R17O96001 155 aa11.25□□□□□ -0.61
LDLR-201ENST00000252444 IGKV1-13P0DP09 117 aa11.25□□□□□ -0.61
LDLR-201ENST00000252444 ZNF525Q8N782 197 aa11.25□□□□□ -0.61
LDLR-201ENST00000252444 NPIPB3Q92617 1050 aa11.25□□□□□ -0.61
LDLR-201ENST00000252444 TAS2R60P59551 318 aa11.24□□□□□ -0.61
LDLR-201ENST00000252444 GUSBP1Q15486 140 aa11.24□□□□□ -0.61
LDLR-201ENST00000252444 TUSC1Q2TAM9 212 aa11.24□□□□□ -0.61
LDLR-201ENST00000252444 TRGV9Q99603 122 aa11.24□□□□□ -0.61
LDLR-201ENST00000252444 WNT10AQ9GZT5 417 aa11.24□□□□□ -0.61
LDLR-201ENST00000252444 TIMM8BQ9Y5J9 83 aaPredicted RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms