RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 AP5S1Q9NUS5 200 aa10.83□□□□□ -0.68
USP40-201ENST00000251722 CMC4P56277 68 aaPredicted RBP10.83□□□□□ -0.68
USP40-201ENST00000251722 H2BFSP57053 126 aa10.83□□□□□ -0.68
USP40-201ENST00000251722 MEF2BQ02080 365 aaPredicted RBP10.83□□□□□ -0.68
USP40-201ENST00000251722 ZNF826PQ6ZT77 177 aa10.83□□□□□ -0.68
USP40-201ENST00000251722 HIST1H4GQ99525 98 aa10.83□□□□□ -0.68
USP40-201ENST00000251722 TM2D1Q9BX74 207 aa10.83□□□□□ -0.68
USP40-201ENST00000251722 TMEM189A5PLL7 270 aa10.83□□□□□ -0.68
USP40-201ENST00000251722 TMEM14DPA8MWL7 114 aa10.83□□□□□ -0.68
USP40-201ENST00000251722 NTN1O95631 604 aa10.83□□□□□ -0.68
USP40-201ENST00000251722 SPINK8P0C7L1 97 aa10.83□□□□□ -0.68
USP40-201ENST00000251722 PSG1P11464 419 aa10.83□□□□□ -0.68
USP40-201ENST00000251722 PRSS53Q2L4Q9 553 aa10.83□□□□□ -0.68
USP40-201ENST00000251722 LINC01590Q5TEZ4 76 aa10.83□□□□□ -0.68
USP40-201ENST00000251722 OR8A1Q8NGG7 326 aa10.83□□□□□ -0.68
USP40-201ENST00000251722 LHX2P50458 406 aa10.82□□□□□ -0.68
USP40-201ENST00000251722 TBL2Q9Y4P3 447 aaKnown RBP10.82□□□□□ -0.68
USP40-201ENST00000251722 EGR4Q05215 589 aa10.82□□□□□ -0.68
USP40-201ENST00000251722 TBR1Q16650 682 aa10.82□□□□□ -0.68
USP40-201ENST00000251722 MRPL16Q9NX20 251 aaKnown RBP10.82□□□□□ -0.68
USP40-201ENST00000251722 PTPRZ1P23471 2315 aaPredicted RBP10.82□□□□□ -0.68
USP40-201ENST00000251722 FGF16O43320 207 aa10.82□□□□□ -0.68
USP40-201ENST00000251722 KLF7O75840 302 aaPredicted RBP10.82□□□□□ -0.68
USP40-201ENST00000251722 FXYD3Q14802 87 aa10.82□□□□□ -0.68
USP40-201ENST00000251722 DUX5Q96PT3 197 aa10.82□□□□□ -0.68
USP40-201ENST00000251722 OR4C46A6NHA9 309 aa10.82□□□□□ -0.68
USP40-201ENST00000251722 EFNB2P52799 333 aa10.82□□□□□ -0.68
USP40-201ENST00000251722 ZP1P60852 638 aa10.82□□□□□ -0.68
USP40-201ENST00000251722 ZNF562Q6V9R5 426 aa10.82□□□□□ -0.68
USP40-201ENST00000251722 LINC00114Q6XXX2 140 aa10.82□□□□□ -0.68
USP40-201ENST00000251722 WFDC3Q8IUB2 231 aa10.82□□□□□ -0.68
USP40-201ENST00000251722 A0A1W2PPE3 182 aa10.82□□□□□ -0.68
USP40-201ENST00000251722 RFPL3SP0C7P2 107 aa10.82□□□□□ -0.68
USP40-201ENST00000251722 ADAD2Q8NCV1 583 aaKnown RBP10.82□□□□□ -0.68
USP40-201ENST00000251722 KCNS1Q96KK3 526 aa10.82□□□□□ -0.68
USP40-201ENST00000251722 KLF4O43474 513 aa10.81□□□□□ -0.68
USP40-201ENST00000251722 SCTP09683 121 aa10.81□□□□□ -0.68
USP40-201ENST00000251722 C20orf144Q9BQM9 153 aa10.81□□□□□ -0.68
USP40-201ENST00000251722 FOXL2P58012 376 aa10.81□□□□□ -0.68
USP40-201ENST00000251722 FAM27E3Q08E93 113 aa10.81□□□□□ -0.68
USP40-201ENST00000251722 FGFRL1Q8N441 504 aa10.81□□□□□ -0.68
USP40-201ENST00000251722 GPR82Q96P67 336 aa10.81□□□□□ -0.68
USP40-201ENST00000251722 TMEM242Q9NWH2 141 aa10.81□□□□□ -0.68
USP40-201ENST00000251722 UBE2L6O14933 153 aa10.81□□□□□ -0.68
USP40-201ENST00000251722 IGHV1-2P23083 117 aa10.81□□□□□ -0.68
USP40-201ENST00000251722 RNASEH2CQ8TDP1 164 aaKnown RBP10.81□□□□□ -0.68
USP40-201ENST00000251722 PAGE4O60829 102 aa10.81□□□□□ -0.68
USP40-201ENST00000251722 MGPP08493 103 aa10.81□□□□□ -0.68
USP40-201ENST00000251722 TDGF1P13385 188 aa10.81□□□□□ -0.68
USP40-201ENST00000251722 OR1N2Q8NGR9 330 aa10.81□□□□□ -0.68
USP40-201ENST00000251722 HDHD3Q9BSH5 251 aaPredicted RBP10.81□□□□□ -0.68
USP40-201ENST00000251722 GAGE5Q13069 117 aa10.8□□□□□ -0.68
USP40-201ENST00000251722 GAGE6Q13070 117 aa10.8□□□□□ -0.68
USP40-201ENST00000251722 MRPS16Q9Y3D3 137 aaKnown RBP10.8□□□□□ -0.68
USP40-201ENST00000251722 TYMSP04818 313 aa10.8□□□□□ -0.68
USP40-201ENST00000251722 PMVKQ15126 192 aa10.8□□□□□ -0.68
USP40-201ENST00000251722 REPIN1Q9BWE0 567 aaKnown RBP10.8□□□□□ -0.68
USP40-201ENST00000251722 MSRB2Q9Y3D2 182 aa10.8□□□□□ -0.68
USP40-201ENST00000251722 RPS11P62280 158 aaKnown RBP eCLIP10.8□□□□□ -0.68
USP40-201ENST00000251722 ATOH7Q8N100 152 aa10.8□□□□□ -0.68
USP40-201ENST00000251722 ST6GALNAC3Q8NDV1 305 aa10.8□□□□□ -0.68
USP40-201ENST00000251722 IGKV3D-15A0A087WSY6 115 aa10.8□□□□□ -0.68
USP40-201ENST00000251722 TMEM250H0YL14 139 aa10.8□□□□□ -0.68
USP40-201ENST00000251722 C8orf88P0DMB2 117 aa10.8□□□□□ -0.68
USP40-201ENST00000251722 HSD52Q0P140 79 aa10.8□□□□□ -0.68
USP40-201ENST00000251722 UNQ6494/PRO21346Q6UXR6 183 aa10.8□□□□□ -0.68
USP40-201ENST00000251722 KBTBD11-OT1A0A1B0GTJ5 212 aa10.8□□□□□ -0.68
USP40-201ENST00000251722 THBDP07204 575 aa10.8□□□□□ -0.68
USP40-201ENST00000251722 MYOD1P15172 320 aa10.8□□□□□ -0.68
USP40-201ENST00000251722 OR51G1Q8NGK1 321 aa10.8□□□□□ -0.68
USP40-201ENST00000251722 AMELYQ99218 206 aa10.8□□□□□ -0.68
USP40-201ENST00000251722 WNT10AQ9GZT5 417 aa10.8□□□□□ -0.68
USP40-201ENST00000251722 PAPPA-AS1Q5QFB9 102 aa10.79□□□□□ -0.68
USP40-201ENST00000251722 TMEM252Q8N6L7 170 aa10.79□□□□□ -0.68
USP40-201ENST00000251722 C9orf106Q8NAJ2 232 aa10.79□□□□□ -0.68
USP40-201ENST00000251722 GATAD1Q8WUU5 269 aa10.79□□□□□ -0.68
USP40-201ENST00000251722 PRSS22Q9GZN4 317 aa10.79□□□□□ -0.68
USP40-201ENST00000251722 TRAV8-2A0A0B4J237 113 aa10.79□□□□□ -0.68
USP40-201ENST00000251722 MOSP00540 346 aa10.79□□□□□ -0.68
USP40-201ENST00000251722 CSN3P07498 182 aa10.79□□□□□ -0.68
USP40-201ENST00000251722 CTSBP07858 339 aa10.79□□□□□ -0.68
USP40-201ENST00000251722 RND2P52198 227 aa10.79□□□□□ -0.68
USP40-201ENST00000251722 GAGE13Q4V321 117 aa10.79□□□□□ -0.68
USP40-201ENST00000251722 TPRX1Q8N7U7 411 aa10.79□□□□□ -0.68
USP40-201ENST00000251722 IMMP2LQ96T52 175 aa10.79□□□□□ -0.68
USP40-201ENST00000251722 MAP1LC3AQ9H492 121 aa10.79□□□□□ -0.68
USP40-201ENST00000251722 METRNQ9UJH8 293 aa10.79□□□□□ -0.68
USP40-201ENST00000251722 TCF19Q9Y242 345 aa10.79□□□□□ -0.68
USP40-201ENST00000251722 SIRT4Q9Y6E7 314 aaPredicted RBP10.79□□□□□ -0.68
USP40-201ENST00000251722 TRBV24-1A0A075B6N3 115 aa10.79□□□□□ -0.68
USP40-201ENST00000251722 SPAG8Q99932 426 aaPredicted RBP10.79□□□□□ -0.68
USP40-201ENST00000251722 GZMBP10144 247 aa10.78□□□□□ -0.68
USP40-201ENST00000251722 SRIP30626 198 aa10.78□□□□□ -0.68
USP40-201ENST00000251722 OTX1P32242 354 aaPredicted RBP10.78□□□□□ -0.68
USP40-201ENST00000251722 DLX6P56179 175 aa10.78□□□□□ -0.68
USP40-201ENST00000251722 C19orf54Q5BKX5 351 aa10.78□□□□□ -0.68
USP40-201ENST00000251722 GRIFINA4D1Z8 144 aa10.78□□□□□ -0.68
USP40-201ENST00000251722 CD5LO43866 347 aa10.78□□□□□ -0.68
USP40-201ENST00000251722 PPP1R17O96001 155 aa10.78□□□□□ -0.68
USP40-201ENST00000251722 TTC9CQ8N5M4 171 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms