RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 TCRBV3S1A0A5B6 114 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 ATP5G3P48201 142 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 HES2Q9Y543 173 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 PRSS21Q9Y6M0 314 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 ARHGAP5Q13017 1502 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 CD5LO43866 347 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 CELA2BP08218 269 aaPredicted RBP3.02□□□□□ -1.93
SCN1A-221ENST00000641996 HOXB2P14652 356 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 SMIM8Q96KF7 97 aa3.02□□□□□ -1.93
SCN1A-221ENST00000641996 SAA2-SAA4A0A096LPE2 208 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 SAA4P35542 130 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 YBX1P67809 324 aaKnown RBP3.01□□□□□ -1.93
SCN1A-221ENST00000641996 IL1F10Q8WWZ1 152 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 TNFRSF19Q9NS68 423 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 ZNF646O15015 1829 aaPredicted RBP3.01□□□□□ -1.93
SCN1A-221ENST00000641996 C1QL1O75973 258 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 IL4P05112 153 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 CD55P08174 381 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 CT62P0C5K7 136 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 PCBP3P57721 371 aaKnown RBP3.01□□□□□ -1.93
SCN1A-221ENST00000641996 IBA57Q5T440 356 aaKnown RBP3.01□□□□□ -1.93
SCN1A-221ENST00000641996 C8orf31Q8N9H6 132 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 KDM5AP29375 1690 aaKnown RBP3.01□□□□□ -1.93
SCN1A-221ENST00000641996 A0A0A0MQY5 61 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 G3V2L1 256 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 GPR137BO60478 399 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 PSG2P11465 335 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 FCGR2CP31995 323 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 VAX1Q5SQQ9 334 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 OR2L13Q8N349 312 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 C15orf53Q8NAA6 179 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 MZB1Q8WU39 189 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 ESM1Q9NQ30 184 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 GCC2Q8IWJ2 1684 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 ANKRD50Q9ULJ7 1429 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 MYOM2P54296 1465 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 ZNF518AQ6AHZ1 1483 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 J3QLW9 94 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 ZIC3O60481 467 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 ADCYAP1P18509 176 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 ADIGQ0VDE8 80 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 C1orf61Q13536 156 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 SYT14P1Q58G82 188 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 GEMIN6Q8WXD5 167 aaKnown RBP3.01□□□□□ -1.93
SCN1A-221ENST00000641996 IMMP2LQ96T52 175 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 DSCR8Q96T75 97 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 TMEM222Q9H0R3 208 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 TAS2R5Q9NYW4 299 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 MTFP1Q9UDX5 166 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 ATP10DQ9P241 1426 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 INO80Q9ULG1 1556 aaPredicted RBP3.01□□□□□ -1.93
SCN1A-221ENST00000641996 LYRM9A8MSI8 78 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 PLA2G10O15496 165 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 WNT1P04628 370 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 WDYHV1Q96HA8 205 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 HIST1H4GQ99525 98 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 GDF15Q99988 308 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 KLHDC2Q9Y2U9 406 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 KIF21BO75037 1637 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 MLH3Q9UHC1 1453 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 COL17A1Q9UMD9 1497 aaPredicted RBP3.01□□□□□ -1.93
SCN1A-221ENST00000641996 SNRPD3P62318 126 aaKnown RBP3.01□□□□□ -1.93
SCN1A-221ENST00000641996 CYCSP99999 105 aaKnown RBP3.01□□□□□ -1.93
SCN1A-221ENST00000641996 SIGLEC7Q9Y286 467 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 INSL5Q9Y5Q6 135 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 HS3ST3B1Q9Y662 390 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 SBF2Q86WG5 1849 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 KIF14Q15058 1648 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 SHISA3A0PJX4 238 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 PLAUP00749 431 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 IGLC1P0CG04 106 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 PRSS41Q7RTY9 318 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 SLC25A42Q86VD7 318 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 ZNF584Q8IVC4 421 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 ADOQ96SZ5 270 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 SPANXCQ9NY87 97 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 CALYQ9NYX4 217 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 KLK5Q9Y337 293 aaPredicted RBP3.01□□□□□ -1.93
SCN1A-221ENST00000641996 ADCY10Q96PN6 1610 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 MST1RQ04912 1400 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 C5orf49A4QMS7 147 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 GALR3O60755 368 aaPredicted RBP3.01□□□□□ -1.93
SCN1A-221ENST00000641996 ZNF688P0C7X2 276 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 KLRD1Q13241 179 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 LINC01620Q4KN68 170 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 ZNF493Q6ZR52 646 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 ARAP2Q8WZ64 1704 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 KIAA1549LQ6ZVL6 1849 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 SEC11BP0C7V7 166 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 MUC6Q6W4X9 2439 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 FMN2Q9NZ56 1722 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 ZCWPW2A0A1B0GU75 182 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 APCSP02743 223 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 TREML2Q5T2D2 321 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 BCDIN3DQ7Z5W3 292 aaKnown RBP3.01□□□□□ -1.93
SCN1A-221ENST00000641996 PYURFQ96I23 114 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 FOXB1Q99853 325 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 DEPPQ9NTK1 212 aa3.01□□□□□ -1.93
SCN1A-221ENST00000641996 RBP4P02753 201 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 PYYP10082 97 aa3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms