RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 CXCL3P19876 107 aa7.79□□□□□ -1.16
CLN3-261ENST00000637686 AKR1C2P52895 323 aa7.79□□□□□ -1.16
CLN3-261ENST00000637686 UBE2KP61086 200 aa7.79□□□□□ -1.16
CLN3-261ENST00000637686 IL15RAQ13261 267 aa7.79□□□□□ -1.16
CLN3-261ENST00000637686 THOC7Q6I9Y2 204 aaKnown RBP7.79□□□□□ -1.16
CLN3-261ENST00000637686 LYZL2Q7Z4W2 148 aa7.79□□□□□ -1.16
CLN3-261ENST00000637686 SLC35E3Q7Z769 313 aa7.79□□□□□ -1.16
CLN3-261ENST00000637686 FOXRED2Q8IWF2 684 aa7.79□□□□□ -1.16
CLN3-261ENST00000637686 OR5AU1Q8NGC0 362 aa7.79□□□□□ -1.16
CLN3-261ENST00000637686 WIPF2Q8TF74 440 aaPredicted RBP7.79□□□□□ -1.16
CLN3-261ENST00000637686 R3HDM4Q96D70 268 aa7.79□□□□□ -1.16
CLN3-261ENST00000637686 RHOVQ96L33 236 aa7.79□□□□□ -1.16
CLN3-261ENST00000637686 C2orf50Q96LR7 162 aa7.79□□□□□ -1.16
CLN3-261ENST00000637686 NOL4LQ96MY1 436 aaPredicted RBP7.79□□□□□ -1.16
CLN3-261ENST00000637686 FYTTD1Q96QD9 318 aaKnown RBP7.79□□□□□ -1.16
CLN3-261ENST00000637686 NEURL2Q9BR09 285 aa7.79□□□□□ -1.16
CLN3-261ENST00000637686 M0QZ24 198 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 GOSR2O14653 212 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 SHOXO15266 292 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 NBR2O15453 112 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 PITX3O75364 302 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 CCNKO75909 580 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 IGKV1-5P01602 117 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 IGHG2P01859 326 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 IGKV1-16P04430 117 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 HOXB5P09067 269 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 H2BFSP57053 126 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 FGL1Q08830 312 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 SMCO1Q147U7 214 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 VMA21Q3ZAQ7 101 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 PDLIM3Q53GG5 364 aaPredicted RBP7.78□□□□□ -1.16
CLN3-261ENST00000637686 PRR31Q5SQ13 230 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 C10orf99Q6UWK7 81 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 H2BFWTQ7Z2G1 175 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 ZNF429Q86V71 674 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 PUSL1Q8N0Z8 303 aaKnown RBP7.78□□□□□ -1.16
CLN3-261ENST00000637686 FAM71E2Q8N5Q1 922 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 TEX45Q8NA69 505 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 UXS1Q8NBZ7 420 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 NPBQ8NG41 125 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 ST6GAL2Q96JF0 529 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 HARBI1Q96MB7 349 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 CITED2Q99967 270 aaPredicted RBP7.78□□□□□ -1.16
CLN3-261ENST00000637686 HSPB9Q9BQS6 159 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 LINC00527Q9UJ94 153 aa7.78□□□□□ -1.16
CLN3-261ENST00000637686 C5orf51A6NDU8 294 aa7.77□□□□□ -1.17
CLN3-261ENST00000637686 PLXNB1O43157 2135 aa7.77□□□□□ -1.17
CLN3-261ENST00000637686 PFDN1O60925 122 aa7.77□□□□□ -1.17
CLN3-261ENST00000637686 ADAP1O75689 374 aa7.77□□□□□ -1.17
CLN3-261ENST00000637686 NDUFA3O95167 84 aa7.77□□□□□ -1.17
CLN3-261ENST00000637686 KRASP01116 189 aa7.77□□□□□ -1.17
CLN3-261ENST00000637686 IGLV2-23P01705 113 aa7.77□□□□□ -1.17
CLN3-261ENST00000637686 PET100P0DJ07 73 aa7.77□□□□□ -1.17
CLN3-261ENST00000637686 RPS16P62249 146 aaKnown RBP7.77□□□□□ -1.17
CLN3-261ENST00000637686 C5orf64Q2M2E5 130 aa7.77□□□□□ -1.17
CLN3-261ENST00000637686 C2orf68Q2NKX9 166 aa7.77□□□□□ -1.17
CLN3-261ENST00000637686 IAH1Q2TAA2 248 aaPredicted RBP7.77□□□□□ -1.17
CLN3-261ENST00000637686 NSUN5P1Q3KNT7 163 aa7.77□□□□□ -1.17
CLN3-261ENST00000637686 ZNF329Q86UD4 541 aa7.77□□□□□ -1.17
CLN3-261ENST00000637686 ZBTB8BQ8NAP8 495 aaPredicted RBP7.77□□□□□ -1.17
CLN3-261ENST00000637686 DMBX1Q8NFW5 382 aa7.77□□□□□ -1.17
CLN3-261ENST00000637686 OR4D5Q8NGN0 318 aa7.77□□□□□ -1.17
CLN3-261ENST00000637686 OR52E5Q8NH55 327 aa7.77□□□□□ -1.17
CLN3-261ENST00000637686 RNASE11Q8TAA1 199 aaKnown RBP7.77□□□□□ -1.17
CLN3-261ENST00000637686 TMEM167AQ8TBQ9 72 aa7.77□□□□□ -1.17
CLN3-261ENST00000637686 GPR146Q96CH1 333 aa7.77□□□□□ -1.17
CLN3-261ENST00000637686 OR10C1Q96KK4 312 aa7.77□□□□□ -1.17
CLN3-261ENST00000637686 PDCD10Q9BUL8 212 aa7.77□□□□□ -1.17
CLN3-261ENST00000637686 FBXL15Q9H469 300 aa7.77□□□□□ -1.17
CLN3-261ENST00000637686 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.77□□□□□ -1.17
CLN3-261ENST00000637686 TMEM140Q9NV12 185 aa7.77□□□□□ -1.17
CLN3-261ENST00000637686 FKBP11Q9NYL4 201 aa7.77□□□□□ -1.17
CLN3-261ENST00000637686 PRR13Q9NZ81 148 aa7.77□□□□□ -1.17
CLN3-261ENST00000637686 KIAA1456Q9P272 454 aa7.77□□□□□ -1.17
CLN3-261ENST00000637686 PRNDQ9UKY0 176 aa7.77□□□□□ -1.17
CLN3-261ENST00000637686 TET2Q6N021 2002 aaPredicted RBP7.77□□□□□ -1.17
CLN3-261ENST00000637686 TRRAPQ9Y4A5 3859 aa7.76□□□□□ -1.17
CLN3-261ENST00000637686 A0A0G2JRQ6 117 aa7.76□□□□□ -1.17
CLN3-261ENST00000637686 PSMB11A5LHX3 300 aa7.76□□□□□ -1.17
CLN3-261ENST00000637686 AP4M1O00189 453 aa7.76□□□□□ -1.17
CLN3-261ENST00000637686 RRHO14718 337 aa7.76□□□□□ -1.17
CLN3-261ENST00000637686 KCNAB3O43448 404 aa7.76□□□□□ -1.17
CLN3-261ENST00000637686 TSPAN15O95858 294 aa7.76□□□□□ -1.17
CLN3-261ENST00000637686 CRYGBP07316 175 aa7.76□□□□□ -1.17
CLN3-261ENST00000637686 MAS1LP35410 378 aa7.76□□□□□ -1.17
CLN3-261ENST00000637686 G6PCP35575 357 aa7.76□□□□□ -1.17
CLN3-261ENST00000637686 ID3Q02535 119 aa7.76□□□□□ -1.17
CLN3-261ENST00000637686 OR2B11Q5JQS5 317 aa7.76□□□□□ -1.17
CLN3-261ENST00000637686 TCTEX1D4Q5JR98 221 aa7.76□□□□□ -1.17
CLN3-261ENST00000637686 OR4A47Q6IF82 309 aa7.76□□□□□ -1.17
CLN3-261ENST00000637686 NDUFA11Q86Y39 141 aa7.76□□□□□ -1.17
CLN3-261ENST00000637686 STPG2Q8N412 459 aa7.76□□□□□ -1.17
CLN3-261ENST00000637686 TMEM14BQ9NUH8 114 aa7.76□□□□□ -1.17
CLN3-261ENST00000637686 METTL1Q9UBP6 276 aaKnown RBP7.76□□□□□ -1.17
CLN3-261ENST00000637686 FOXA2Q9Y261 457 aaPredicted RBP7.76□□□□□ -1.17
CLN3-261ENST00000637686 ZNF257Q9Y2Q1 563 aa7.76□□□□□ -1.17
CLN3-261ENST00000637686 IGHV7-81A0A0B4J1V7 117 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 C13orf42A0A1B0GVH6 325 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 A0A1W2PRX2 142 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 TCRBV4S1A1TA0A5B7 111 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms