RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 CNIH1O95406 144 aa14.87□□□□□ -0.03
CLN3-260ENST00000637578 RND3P61587 244 aa14.87□□□□□ -0.03
CLN3-260ENST00000637578 PRSS8Q16651 343 aa14.87□□□□□ -0.03
CLN3-260ENST00000637578 VMA21Q3ZAQ7 101 aa14.87□□□□□ -0.03
CLN3-260ENST00000637578 C5orf66Q9H5L9 145 aa14.87□□□□□ -0.03
CLN3-260ENST00000637578 NAP1L6A6NFF2 107 aa14.86□□□□□ -0.03
CLN3-260ENST00000637578 PLA2G10O15496 165 aa14.86□□□□□ -0.03
CLN3-260ENST00000637578 RBFOX2O43251 390 aaKnown RBP eCLIP14.86□□□□□ -0.03
CLN3-260ENST00000637578 F2RP25116 425 aa14.86□□□□□ -0.03
CLN3-260ENST00000637578 POC5Q8NA72 575 aa14.86□□□□□ -0.03
CLN3-260ENST00000637578 MS4A10Q96PG2 267 aa14.86□□□□□ -0.03
CLN3-260ENST00000637578 C7orf50Q9BRJ6 194 aaKnown RBP14.86□□□□□ -0.03
CLN3-260ENST00000637578 RTBDNQ9BSG5 229 aaPredicted RBP14.86□□□□□ -0.03
CLN3-260ENST00000637578 C14orf166Q9Y224 244 aaKnown RBP14.86□□□□□ -0.03
CLN3-260ENST00000637578 SEC14L6B5MCN3 397 aa14.85□□□□□ -0.03
CLN3-260ENST00000637578 MPPED1O15442 326 aa14.85□□□□□ -0.03
CLN3-260ENST00000637578 UPK1BO75841 260 aa14.85□□□□□ -0.03
CLN3-260ENST00000637578 BTCP35070 178 aa14.85□□□□□ -0.03
CLN3-260ENST00000637578 CCR6P51684 374 aa14.85□□□□□ -0.03
CLN3-260ENST00000637578 COPZ2Q9P299 210 aa14.85□□□□□ -0.03
CLN3-260ENST00000637578 TNCP24821 2201 aa14.85□□□□□ -0.03
CLN3-260ENST00000637578 CENPXA8MT69 81 aa14.85□□□□□ -0.03
CLN3-260ENST00000637578 LINC01619G3V211 115 aa14.85□□□□□ -0.03
CLN3-260ENST00000637578 SAA1P0DJI8 122 aaPredicted RBP14.85□□□□□ -0.03
CLN3-260ENST00000637578 TPPP2P59282 170 aa14.85□□□□□ -0.03
CLN3-260ENST00000637578 CCDC71LQ8N9Z2 235 aa14.85□□□□□ -0.03
CLN3-260ENST00000637578 OR5T1Q8NG75 326 aa14.85□□□□□ -0.03
CLN3-260ENST00000637578 CD300LFQ8TDQ1 290 aa14.85□□□□□ -0.03
CLN3-260ENST00000637578 DCUN1D4Q92564 292 aa14.85□□□□□ -0.03
CLN3-260ENST00000637578 IGHV4OR15-8A0A075B7B6 117 aa14.84□□□□□ -0.03
CLN3-260ENST00000637578 A0A087WW49 117 aa14.84□□□□□ -0.03
CLN3-260ENST00000637578 LYRM1O43325 122 aa14.84□□□□□ -0.03
CLN3-260ENST00000637578 S1PR2O95136 353 aa14.84□□□□□ -0.03
CLN3-260ENST00000637578 TRGV3P03979 118 aa14.84□□□□□ -0.03
CLN3-260ENST00000637578 INSL3P51460 131 aa14.84□□□□□ -0.03
CLN3-260ENST00000637578 IFITM3Q01628 133 aa14.84□□□□□ -0.03
CLN3-260ENST00000637578 VKORC1L1Q8N0U8 176 aa14.84□□□□□ -0.03
CLN3-260ENST00000637578 DLX4Q92988 240 aaPredicted RBP14.84□□□□□ -0.03
CLN3-260ENST00000637578 SCGB3A2Q96PL1 93 aa14.84□□□□□ -0.03
CLN3-260ENST00000637578 SLC25A21Q9BQT8 299 aaPredicted RBP14.84□□□□□ -0.03
CLN3-260ENST00000637578 TBC1D24Q9ULP9 559 aa14.84□□□□□ -0.03
CLN3-260ENST00000637578 MSGN1A6NI15 193 aa14.83□□□□□ -0.04
CLN3-260ENST00000637578 HSPB1P04792 205 aaKnown RBP14.83□□□□□ -0.04
CLN3-260ENST00000637578 RBMS2Q15434 407 aaKnown RBP14.83□□□□□ -0.04
CLN3-260ENST00000637578 ZNF585BQ52M93 769 aa14.83□□□□□ -0.04
CLN3-260ENST00000637578 ADAD2Q8NCV1 583 aaKnown RBP14.83□□□□□ -0.04
CLN3-260ENST00000637578 ZNF430Q9H8G1 570 aaPredicted RBP14.83□□□□□ -0.04
CLN3-260ENST00000637578 PLEKHA2Q9HB19 425 aa14.83□□□□□ -0.04
CLN3-260ENST00000637578 OVOL1O14753 267 aa14.82□□□□□ -0.04
CLN3-260ENST00000637578 HPRT1P00492 218 aa14.82□□□□□ -0.04
CLN3-260ENST00000637578 IGHV3-11P01762 117 aa14.82□□□□□ -0.04
CLN3-260ENST00000637578 LPAR6P43657 344 aa14.82□□□□□ -0.04
CLN3-260ENST00000637578 SLURP1P55000 103 aa14.82□□□□□ -0.04
CLN3-260ENST00000637578 DEFB121Q5J5C9 76 aa14.82□□□□□ -0.04
CLN3-260ENST00000637578 SRSF12Q8WXF0 261 aaKnown RBP14.82□□□□□ -0.04
CLN3-260ENST00000637578 TMEM230Q96A57 120 aa14.82□□□□□ -0.04
CLN3-260ENST00000637578 TP53RKQ96S44 253 aa14.82□□□□□ -0.04
CLN3-260ENST00000637578 A0A0G2JLM5 398 aa14.81□□□□□ -0.04
CLN3-260ENST00000637578 C3orf85A0A1B0GTC6 90 aa14.81□□□□□ -0.04
CLN3-260ENST00000637578 H0Y980 276 aa14.81□□□□□ -0.04
CLN3-260ENST00000637578 CREBL2O60519 120 aaPredicted RBP14.81□□□□□ -0.04
CLN3-260ENST00000637578 TNXAQ16473 311 aa14.81□□□□□ -0.04
CLN3-260ENST00000637578 SSX9Q7RTT3 188 aa14.81□□□□□ -0.04
CLN3-260ENST00000637578 MMD2Q8IY49 270 aa14.81□□□□□ -0.04
CLN3-260ENST00000637578 PUSL1Q8N0Z8 303 aaKnown RBP14.81□□□□□ -0.04
CLN3-260ENST00000637578 ZNF355PQ9NSJ1 428 aa14.81□□□□□ -0.04
CLN3-260ENST00000637578 TEX13DA0A0J9YY54 714 aaPredicted RBP14.81□□□□□ -0.04
CLN3-260ENST00000637578 NDUFB6O95139 128 aa14.81□□□□□ -0.04
CLN3-260ENST00000637578 HRASP01112 189 aa14.81□□□□□ -0.04
CLN3-260ENST00000637578 TAS2R31P59538 309 aa14.81□□□□□ -0.04
CLN3-260ENST00000637578 ASAH1Q13510 395 aa14.81□□□□□ -0.04
CLN3-260ENST00000637578 SP6Q3SY56 376 aa14.81□□□□□ -0.04
CLN3-260ENST00000637578 TMED4Q7Z7H5 227 aa14.81□□□□□ -0.04
CLN3-260ENST00000637578 ZNF429Q86V71 674 aa14.81□□□□□ -0.04
CLN3-260ENST00000637578 NAA60Q9H7X0 242 aa14.81□□□□□ -0.04
CLN3-260ENST00000637578 FAM212BQ9NTI7 297 aaPredicted RBP14.81□□□□□ -0.04
CLN3-260ENST00000637578 COMMD9Q9P000 198 aa14.81□□□□□ -0.04
CLN3-260ENST00000637578 CRYM-AS1A6NIL9 109 aa14.8□□□□□ -0.04
CLN3-260ENST00000637578 NQO2P16083 231 aa14.8□□□□□ -0.04
CLN3-260ENST00000637578 AKR1C4P17516 323 aa14.8□□□□□ -0.04
CLN3-260ENST00000637578 DCTN2Q13561 401 aaKnown RBP14.8□□□□□ -0.04
CLN3-260ENST00000637578 VSTM2AQ8TAG5 236 aa14.8□□□□□ -0.04
CLN3-260ENST00000637578 TMEM167AQ8TBQ9 72 aa14.8□□□□□ -0.04
CLN3-260ENST00000637578 LSM4Q9Y4Z0 139 aaKnown RBP14.8□□□□□ -0.04
CLN3-260ENST00000637578 C13orf42A0A1B0GVH6 325 aa14.79□□□□□ -0.04
CLN3-260ENST00000637578 KBTBD11O94819 623 aa14.79□□□□□ -0.04
CLN3-260ENST00000637578 OR2A4O95047 310 aa14.79□□□□□ -0.04
CLN3-260ENST00000637578 IGKV1-39P01597 117 aa14.79□□□□□ -0.04
CLN3-260ENST00000637578 IGKV1D-39P04432 117 aa14.79□□□□□ -0.04
CLN3-260ENST00000637578 SERPINE2P07093 398 aa14.79□□□□□ -0.04
CLN3-260ENST00000637578 OR5AC1P0C628 307 aa14.79□□□□□ -0.04
CLN3-260ENST00000637578 OR9G9P0C7N8 305 aa14.79□□□□□ -0.04
CLN3-260ENST00000637578 RPA2P15927 270 aa14.79□□□□□ -0.04
CLN3-260ENST00000637578 POU2AF1Q16633 256 aa14.79□□□□□ -0.04
CLN3-260ENST00000637578 ACSM6Q6P461 480 aa14.79□□□□□ -0.04
CLN3-260ENST00000637578 SGPP2Q8IWX5 399 aa14.79□□□□□ -0.04
CLN3-260ENST00000637578 USMG5Q96IX5 58 aa14.79□□□□□ -0.04
CLN3-260ENST00000637578 OR2A7Q96R45 310 aa14.79□□□□□ -0.04
CLN3-260ENST00000637578 TSC22D3Q99576 134 aa14.79□□□□□ -0.04
CLN3-260ENST00000637578 PHB2Q99623 299 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms