RNA–Protein interactions for RNA: ENST00000636214.1

PNKP-225, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 5

Gene PNKP, Length 805 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-225	ENST00000636214	CITED4	Q96RK1	184 aa		13.61	□□□□□ -0.23
PNKP-225	ENST00000636214	TECR	Q9NZ01	308 aa	Known RBP	13.61	□□□□□ -0.23
PNKP-225	ENST00000636214	THYN1	Q9P016	225 aa		13.61	□□□□□ -0.23
PNKP-225	ENST00000636214	OR2C1	O95371	312 aa		13.6	□□□□□ -0.23
PNKP-225	ENST00000636214	HLA-A	P01891	365 aa	Known RBP	13.6	□□□□□ -0.23
PNKP-225	ENST00000636214	REG1A	P05451	166 aa		13.6	□□□□□ -0.23
PNKP-225	ENST00000636214	CTRB1	P17538	263 aa		13.6	□□□□□ -0.23
PNKP-225	ENST00000636214	GUCA2B	Q16661	112 aa		13.6	□□□□□ -0.23
PNKP-225	ENST00000636214	CD300E	Q496F6	205 aa	Predicted RBP	13.6	□□□□□ -0.23
PNKP-225	ENST00000636214	CTRB2	Q6GPI1	263 aa		13.6	□□□□□ -0.23
PNKP-225	ENST00000636214	CLEC19A	Q6UXS0	136 aa		13.6	□□□□□ -0.23
PNKP-225	ENST00000636214	CMTM1	Q8IZ96	169 aa		13.6	□□□□□ -0.23
PNKP-225	ENST00000636214	ZNF2	Q9BSG1	426 aa	Predicted RBP	13.6	□□□□□ -0.23
PNKP-225	ENST00000636214	PLEKHA2	Q9HB19	425 aa		13.6	□□□□□ -0.23
PNKP-225	ENST00000636214	TMEM140	Q9NV12	185 aa		13.6	□□□□□ -0.23
PNKP-225	ENST00000636214	COMMD9	Q9P000	198 aa		13.6	□□□□□ -0.23
PNKP-225	ENST00000636214	RYR3	Q15413	4870 aa		13.59	□□□□□ -0.23
PNKP-225	ENST00000636214	TRBV7-1	A0A0A6YYK4	115 aa		13.59	□□□□□ -0.23
PNKP-225	ENST00000636214	SMIM31	A0A1B0GVY4	71 aa		13.59	□□□□□ -0.23
PNKP-225	ENST00000636214	ZNF320	A2RRD8	509 aa		13.59	□□□□□ -0.23
PNKP-225	ENST00000636214	IZUMO1R	A6ND01	250 aa		13.59	□□□□□ -0.23
PNKP-225	ENST00000636214	C2orf70	A6NJV1	201 aa		13.59	□□□□□ -0.23
PNKP-225	ENST00000636214		E7EUB6	86 aa		13.59	□□□□□ -0.23
PNKP-225	ENST00000636214	NDUFB8	O95169	186 aa		13.59	□□□□□ -0.23
PNKP-225	ENST00000636214	S100G	P29377	79 aa		13.59	□□□□□ -0.23
PNKP-225	ENST00000636214	PRSS3	P35030	304 aa		13.59	□□□□□ -0.23
PNKP-225	ENST00000636214	TGFBR1	P36897	503 aa		13.59	□□□□□ -0.23
PNKP-225	ENST00000636214	RPS19	P39019	145 aa	Known RBP	13.59	□□□□□ -0.23
PNKP-225	ENST00000636214	TAS2R20	P59543	309 aa		13.59	□□□□□ -0.23
PNKP-225	ENST00000636214	CASC10	Q5T4H9	136 aa		13.59	□□□□□ -0.23
PNKP-225	ENST00000636214	THOC7	Q6I9Y2	204 aa	Known RBP	13.59	□□□□□ -0.23
PNKP-225	ENST00000636214		S4R3C0	116 aa		13.59	□□□□□ -0.23
PNKP-225	ENST00000636214		A0A1B0GW64	132 aa		13.58	□□□□□ -0.24
PNKP-225	ENST00000636214	LGALS9	O00182	355 aa		13.58	□□□□□ -0.24
PNKP-225	ENST00000636214	UPK2	O00526	184 aa		13.58	□□□□□ -0.24
PNKP-225	ENST00000636214	S1PR2	O95136	353 aa		13.58	□□□□□ -0.24
PNKP-225	ENST00000636214	PMP2	P02689	132 aa		13.58	□□□□□ -0.24
PNKP-225	ENST00000636214	RLN1	P04808	185 aa		13.58	□□□□□ -0.24
PNKP-225	ENST00000636214	FOLR2	P14207	255 aa		13.58	□□□□□ -0.24
PNKP-225	ENST00000636214	MYOD1	P15172	320 aa		13.58	□□□□□ -0.24
PNKP-225	ENST00000636214	RFX2	P48378	723 aa		13.58	□□□□□ -0.24
PNKP-225	ENST00000636214	OR2B8P	P59922	312 aa		13.58	□□□□□ -0.24
PNKP-225	ENST00000636214	POU2AF1	Q16633	256 aa		13.58	□□□□□ -0.24
PNKP-225	ENST00000636214	HAGH	Q16775	308 aa		13.58	□□□□□ -0.24
PNKP-225	ENST00000636214	GPHB5	Q86YW7	130 aa		13.58	□□□□□ -0.24
PNKP-225	ENST00000636214	MOB3A	Q96BX8	217 aa		13.58	□□□□□ -0.24
PNKP-225	ENST00000636214	YIPF6	Q96EC8	236 aa		13.58	□□□□□ -0.24
PNKP-225	ENST00000636214	CCDC140	Q96MF4	163 aa		13.58	□□□□□ -0.24
PNKP-225	ENST00000636214	FANCD2OS	Q96PS1	177 aa		13.58	□□□□□ -0.24
PNKP-225	ENST00000636214	NEURL2	Q9BR09	285 aa		13.58	□□□□□ -0.24
PNKP-225	ENST00000636214	SRSF8	Q9BRL6	282 aa	Known RBP	13.58	□□□□□ -0.24
PNKP-225	ENST00000636214	QTRT1	Q9BXR0	403 aa	Known RBP	13.58	□□□□□ -0.24
PNKP-225	ENST00000636214	PLEKHA3	Q9HB20	300 aa		13.58	□□□□□ -0.24
PNKP-225	ENST00000636214	DNAH7	Q8WXX0	4024 aa		13.57	□□□□□ -0.24
PNKP-225	ENST00000636214	RPA2	P15927	270 aa		13.57	□□□□□ -0.24
PNKP-225	ENST00000636214	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	13.57	□□□□□ -0.24
PNKP-225	ENST00000636214	THAP7	Q9BT49	309 aa	Predicted RBP	13.57	□□□□□ -0.24
PNKP-225	ENST00000636214	CEPT1	Q9Y6K0	416 aa		13.57	□□□□□ -0.24
PNKP-225	ENST00000636214	IGLV11-55	A0A075B6I3	123 aa		13.56	□□□□□ -0.24
PNKP-225	ENST00000636214	MARCH11	A6NNE9	402 aa		13.56	□□□□□ -0.24
PNKP-225	ENST00000636214	SNAPC5	O75971	98 aa		13.56	□□□□□ -0.24
PNKP-225	ENST00000636214	FGF2	P09038	288 aa		13.56	□□□□□ -0.24
PNKP-225	ENST00000636214	F2R	P25116	425 aa		13.56	□□□□□ -0.24
PNKP-225	ENST00000636214	GNRHR	P30968	328 aa		13.56	□□□□□ -0.24
PNKP-225	ENST00000636214	MECP2	P51608	486 aa	Known RBP	13.56	□□□□□ -0.24
PNKP-225	ENST00000636214	TSPAN5	P62079	268 aa		13.56	□□□□□ -0.24
PNKP-225	ENST00000636214	DEFB114	Q30KQ6	69 aa		13.56	□□□□□ -0.24
PNKP-225	ENST00000636214	ZNF57	Q68EA5	555 aa	Predicted RBP	13.56	□□□□□ -0.24
PNKP-225	ENST00000636214	DHRS11	Q6UWP2	260 aa		13.56	□□□□□ -0.24
PNKP-225	ENST00000636214	SLC16A13	Q7RTY0	426 aa		13.56	□□□□□ -0.24
PNKP-225	ENST00000636214	OR6F1	Q8NGZ6	308 aa		13.56	□□□□□ -0.24
PNKP-225	ENST00000636214	SLC25A46	Q96AG3	418 aa		13.56	□□□□□ -0.24
PNKP-225	ENST00000636214	HINT2	Q9BX68	163 aa		13.56	□□□□□ -0.24
PNKP-225	ENST00000636214	TRAV3	A0A0B4J244	114 aa		13.55	□□□□□ -0.24
PNKP-225	ENST00000636214	MFSD2B	A6NFX1	497 aa		13.55	□□□□□ -0.24
PNKP-225	ENST00000636214	GPR31	O00270	319 aa		13.55	□□□□□ -0.24
PNKP-225	ENST00000636214	CLEC3B	P05452	202 aa		13.55	□□□□□ -0.24
PNKP-225	ENST00000636214	TRAPPC2	P0DI81	140 aa		13.55	□□□□□ -0.24
PNKP-225	ENST00000636214	TRAPPC2B	P0DI82	140 aa		13.55	□□□□□ -0.24
PNKP-225	ENST00000636214	LPCAT3	Q6P1A2	487 aa		13.55	□□□□□ -0.24
PNKP-225	ENST00000636214	PLET1	Q6UQ28	207 aa		13.55	□□□□□ -0.24
PNKP-225	ENST00000636214	OR1L8	Q8NGR8	309 aa		13.55	□□□□□ -0.24
PNKP-225	ENST00000636214	COMMD3	Q9UBI1	195 aa		13.55	□□□□□ -0.24
PNKP-225	ENST00000636214	ANAPC10	Q9UM13	185 aa		13.55	□□□□□ -0.24
PNKP-225	ENST00000636214	IGLC7	A0M8Q6	106 aa		13.54	□□□□□ -0.24
PNKP-225	ENST00000636214	PGLYRP1	O75594	196 aa	Predicted RBP	13.54	□□□□□ -0.24
PNKP-225	ENST00000636214	CBLN1	P23435	193 aa		13.54	□□□□□ -0.24
PNKP-225	ENST00000636214	HLA-DMA	P28067	261 aa		13.54	□□□□□ -0.24
PNKP-225	ENST00000636214	GPR183	P32249	361 aa		13.54	□□□□□ -0.24
PNKP-225	ENST00000636214	HRH1	P35367	487 aa		13.54	□□□□□ -0.24
PNKP-225	ENST00000636214	LPAR6	P43657	344 aa		13.54	□□□□□ -0.24
PNKP-225	ENST00000636214	KLK9	Q2XQG4	91 aa		13.54	□□□□□ -0.24
PNKP-225	ENST00000636214	ADAMTSL5	Q6ZMM2	481 aa		13.54	□□□□□ -0.24
PNKP-225	ENST00000636214	GDPD1	Q8N9F7	314 aa		13.54	□□□□□ -0.24
PNKP-225	ENST00000636214	DGCR14	Q96DF8	476 aa	Known RBP	13.54	□□□□□ -0.24
PNKP-225	ENST00000636214	SRD5A3	Q9H8P0	318 aa		13.54	□□□□□ -0.24
PNKP-225	ENST00000636214	ZC4H2	Q9NQZ6	224 aa		13.54	□□□□□ -0.24
PNKP-225	ENST00000636214	KLK9	Q9UKQ9	250 aa		13.54	□□□□□ -0.24
PNKP-225	ENST00000636214	DMRT1	Q9Y5R6	373 aa		13.54	□□□□□ -0.24
PNKP-225	ENST00000636214	CGB1	A6NKQ9	187 aa		13.53	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms