RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 MSGN1A6NI15 193 aa14.15□□□□□ -0.14
CLN3-243ENST00000635973 NUDT19A8MXV4 375 aa14.15□□□□□ -0.14
CLN3-243ENST00000635973 B3GALNT1O75752 331 aa14.15□□□□□ -0.14
CLN3-243ENST00000635973 DUS4LO95620 317 aaKnown RBP14.15□□□□□ -0.14
CLN3-243ENST00000635973 HLA-GP17693 338 aa14.15□□□□□ -0.14
CLN3-243ENST00000635973 RPL27AP46776 148 aaKnown RBP14.15□□□□□ -0.14
CLN3-243ENST00000635973 SP6Q3SY56 376 aa14.15□□□□□ -0.14
CLN3-243ENST00000635973 LCNL1Q6ZST4 164 aa14.15□□□□□ -0.14
CLN3-243ENST00000635973 SGPP2Q8IWX5 399 aa14.15□□□□□ -0.14
CLN3-243ENST00000635973 OR5M8Q8NGP6 311 aa14.15□□□□□ -0.14
CLN3-243ENST00000635973 RNASE11Q8TAA1 199 aaKnown RBP14.15□□□□□ -0.14
CLN3-243ENST00000635973 RCC1LQ96I51 464 aaKnown RBP14.15□□□□□ -0.14
CLN3-243ENST00000635973 FYTTD1Q96QD9 318 aaKnown RBP14.15□□□□□ -0.14
CLN3-243ENST00000635973 SPIN2AQ99865 258 aa14.15□□□□□ -0.14
CLN3-243ENST00000635973 SPIN2BQ9BPZ2 258 aa14.15□□□□□ -0.14
CLN3-243ENST00000635973 C7orf50Q9BRJ6 194 aaKnown RBP14.15□□□□□ -0.14
CLN3-243ENST00000635973 TNCP24821 2201 aa14.14□□□□□ -0.15
CLN3-243ENST00000635973 CRYM-AS1A6NIL9 109 aa14.14□□□□□ -0.15
CLN3-243ENST00000635973 UPK2O00526 184 aa14.14□□□□□ -0.15
CLN3-243ENST00000635973 SNAPC5O75971 98 aa14.14□□□□□ -0.15
CLN3-243ENST00000635973 ATG12O94817 140 aa14.14□□□□□ -0.15
CLN3-243ENST00000635973 RPLP1P05386 114 aaKnown RBP14.14□□□□□ -0.15
CLN3-243ENST00000635973 OR5AC1P0C628 307 aa14.14□□□□□ -0.15
CLN3-243ENST00000635973 AKR1C4P17516 323 aa14.14□□□□□ -0.15
CLN3-243ENST00000635973 PPIFP30405 207 aaKnown RBP14.14□□□□□ -0.15
CLN3-243ENST00000635973 AKR1C2P52895 323 aa14.14□□□□□ -0.15
CLN3-243ENST00000635973 RPL23AP62750 156 aaKnown RBP14.14□□□□□ -0.15
CLN3-243ENST00000635973 ZNF846Q147U1 533 aa14.14□□□□□ -0.15
CLN3-243ENST00000635973 RBMS2Q15434 407 aaKnown RBP14.14□□□□□ -0.15
CLN3-243ENST00000635973 H2BFWTQ7Z2G1 175 aa14.14□□□□□ -0.15
CLN3-243ENST00000635973 MINDY2Q8NBR6 621 aa14.14□□□□□ -0.15
CLN3-243ENST00000635973 ADAD2Q8NCV1 583 aaKnown RBP14.14□□□□□ -0.15
CLN3-243ENST00000635973 DPF1Q92782 380 aa14.14□□□□□ -0.15
CLN3-243ENST00000635973 TMEM68Q96MH6 324 aa14.14□□□□□ -0.15
CLN3-243ENST00000635973 SLC25A21Q9BQT8 299 aaPredicted RBP14.14□□□□□ -0.15
CLN3-243ENST00000635973 COMMD5Q9GZQ3 224 aa14.14□□□□□ -0.15
CLN3-243ENST00000635973 ZNF355PQ9NSJ1 428 aa14.14□□□□□ -0.15
CLN3-243ENST00000635973 ZFP57Q9NU63 452 aa14.14□□□□□ -0.15
CLN3-243ENST00000635973 TRAV3A0A0B4J244 114 aa14.13□□□□□ -0.15
CLN3-243ENST00000635973 PSMB8P28062 276 aa14.13□□□□□ -0.15
CLN3-243ENST00000635973 CCR6P51684 374 aa14.13□□□□□ -0.15
CLN3-243ENST00000635973 C19orf54Q5BKX5 351 aa14.13□□□□□ -0.15
CLN3-243ENST00000635973 KLHL30-AS1Q8NEE0 82 aa14.13□□□□□ -0.15
CLN3-243ENST00000635973 OR5T1Q8NG75 326 aa14.13□□□□□ -0.15
CLN3-243ENST00000635973 CASTOR1Q8WTX7 329 aa14.13□□□□□ -0.15
CLN3-243ENST00000635973 TSC22D3Q99576 134 aa14.13□□□□□ -0.15
CLN3-243ENST00000635973 GPR61Q9BZJ8 451 aa14.13□□□□□ -0.15
CLN3-243ENST00000635973 IGKV1-39P01597 117 aa14.12□□□□□ -0.15
CLN3-243ENST00000635973 IGLV1-40P01703 118 aa14.12□□□□□ -0.15
CLN3-243ENST00000635973 IGKV1D-39P04432 117 aa14.12□□□□□ -0.15
CLN3-243ENST00000635973 UCP1P25874 307 aa14.12□□□□□ -0.15
CLN3-243ENST00000635973 DHODHQ02127 395 aa14.12□□□□□ -0.15
CLN3-243ENST00000635973 RNF152Q8N8N0 203 aa14.12□□□□□ -0.15
CLN3-243ENST00000635973 SEC22AQ96IW7 307 aa14.12□□□□□ -0.15
CLN3-243ENST00000635973 TMEM222Q9H0R3 208 aa14.12□□□□□ -0.15
CLN3-243ENST00000635973 COA4Q9NYJ1 87 aa14.12□□□□□ -0.15
CLN3-243ENST00000635973 KCNIP3Q9Y2W7 256 aa14.12□□□□□ -0.15
CLN3-243ENST00000635973 SOX15O60248 233 aa14.11□□□□□ -0.15
CLN3-243ENST00000635973 RBMXL2O75526 392 aaKnown RBP14.11□□□□□ -0.15
CLN3-243ENST00000635973 ANXA3P12429 323 aa14.11□□□□□ -0.15
CLN3-243ENST00000635973 MYOD1P15172 320 aa14.11□□□□□ -0.15
CLN3-243ENST00000635973 RAB9AP51151 201 aa14.11□□□□□ -0.15
CLN3-243ENST00000635973 TPPP2P59282 170 aa14.11□□□□□ -0.15
CLN3-243ENST00000635973 OR2B8PP59922 312 aa14.11□□□□□ -0.15
CLN3-243ENST00000635973 ASPHD1Q5U4P2 390 aa14.11□□□□□ -0.15
CLN3-243ENST00000635973 ZNF695Q8IW36 515 aa14.11□□□□□ -0.15
CLN3-243ENST00000635973 OR4A16Q8NH70 328 aa14.11□□□□□ -0.15
CLN3-243ENST00000635973 TMEM230Q96A57 120 aa14.11□□□□□ -0.15
CLN3-243ENST00000635973 RRNAD1Q96FB5 475 aaKnown RBP14.11□□□□□ -0.15
CLN3-243ENST00000635973 MS4A10Q96PG2 267 aa14.11□□□□□ -0.15
CLN3-243ENST00000635973 KLK15Q9H2R5 256 aa14.11□□□□□ -0.15
CLN3-243ENST00000635973 PRNDQ9UKY0 176 aa14.11□□□□□ -0.15
CLN3-243ENST00000635973 NSG2Q9Y328 171 aa14.11□□□□□ -0.15
CLN3-243ENST00000635973 HMX3A6NHT5 357 aa14.1□□□□□ -0.15
CLN3-243ENST00000635973 LYRM1O43325 122 aa14.1□□□□□ -0.15
CLN3-243ENST00000635973 TRGV3P03979 118 aa14.1□□□□□ -0.15
CLN3-243ENST00000635973 OR9G9P0C7N8 305 aa14.1□□□□□ -0.15
CLN3-243ENST00000635973 DEFB121Q5J5C9 76 aa14.1□□□□□ -0.15
CLN3-243ENST00000635973 SLC25A42Q86VD7 318 aa14.1□□□□□ -0.15
CLN3-243ENST00000635973 CADM3Q8N126 398 aa14.1□□□□□ -0.15
CLN3-243ENST00000635973 CENPSQ8N2Z9 138 aa14.1□□□□□ -0.15
CLN3-243ENST00000635973 HINT2Q9BX68 163 aa14.1□□□□□ -0.15
CLN3-243ENST00000635973 QTRT1Q9BXR0 403 aaKnown RBP14.1□□□□□ -0.15
CLN3-243ENST00000635973 SLA2Q9H6Q3 261 aa14.1□□□□□ -0.15
CLN3-243ENST00000635973 FKBP11Q9NYL4 201 aa14.1□□□□□ -0.15
CLN3-243ENST00000635973 H3BUA1 57 aa14.09□□□□□ -0.15
CLN3-243ENST00000635973 NDUFB6O95139 128 aa14.09□□□□□ -0.15
CLN3-243ENST00000635973 IL6RP08887 468 aaPredicted RBP14.09□□□□□ -0.15
CLN3-243ENST00000635973 FGF2P09038 288 aa14.09□□□□□ -0.15
CLN3-243ENST00000635973 SLC6A1P30531 599 aa14.09□□□□□ -0.15
CLN3-243ENST00000635973 TMEM128Q5BJH2 165 aa14.09□□□□□ -0.15
CLN3-243ENST00000635973 C18orf65Q6ZTR6 163 aa14.09□□□□□ -0.15
CLN3-243ENST00000635973 C8orf86Q6ZUL3 223 aa14.09□□□□□ -0.15
CLN3-243ENST00000635973 OR1L8Q8NGR8 309 aa14.09□□□□□ -0.15
CLN3-243ENST00000635973 GLYATL2Q8WU03 294 aa14.09□□□□□ -0.15
CLN3-243ENST00000635973 RBPMSQ93062 196 aaKnown RBP14.09□□□□□ -0.15
CLN3-243ENST00000635973 GALNT14Q96FL9 552 aa14.09□□□□□ -0.15
CLN3-243ENST00000635973 MCRIP2Q9BUT9 160 aaKnown RBP14.09□□□□□ -0.15
CLN3-243ENST00000635973 OR51B2Q9Y5P1 312 aa14.09□□□□□ -0.15
CLN3-243ENST00000635973 C15orf61A6NNL5 157 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms