RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 ZNF645Q8N7E2 425 aa9.03□□□□□ -0.96
UPF3A-212ENST00000619079 NUDT11Q96G61 164 aa9.03□□□□□ -0.96
UPF3A-212ENST00000619079 OSTCQ9NRP0 149 aa9.03□□□□□ -0.96
UPF3A-212ENST00000619079 C19orf25Q9UFG5 118 aaPredicted RBP9.03□□□□□ -0.96
UPF3A-212ENST00000619079 BMPR1BO00238 502 aa9.02□□□□□ -0.97
UPF3A-212ENST00000619079 AREGP15514 252 aa9.02□□□□□ -0.97
UPF3A-212ENST00000619079 GCHFRP30047 84 aa9.02□□□□□ -0.97
UPF3A-212ENST00000619079 GNG4P50150 75 aa9.02□□□□□ -0.97
UPF3A-212ENST00000619079 RAC3P60763 192 aa9.02□□□□□ -0.97
UPF3A-212ENST00000619079 TBR1Q16650 682 aa9.02□□□□□ -0.97
UPF3A-212ENST00000619079 NRN1LQ496H8 165 aa9.02□□□□□ -0.97
UPF3A-212ENST00000619079 OR4A47Q6IF82 309 aa9.02□□□□□ -0.97
UPF3A-212ENST00000619079 RASL11AQ6T310 242 aa9.02□□□□□ -0.97
UPF3A-212ENST00000619079 AAED1Q7RTV5 226 aa9.02□□□□□ -0.97
UPF3A-212ENST00000619079 H2BFWTQ7Z2G1 175 aa9.02□□□□□ -0.97
UPF3A-212ENST00000619079 WDR31Q8NA23 367 aa9.02□□□□□ -0.97
UPF3A-212ENST00000619079 FGF23Q9GZV9 251 aaPredicted RBP9.02□□□□□ -0.97
UPF3A-212ENST00000619079 OR2D2Q9H210 308 aa9.02□□□□□ -0.97
UPF3A-212ENST00000619079 KCNIP1Q9NZI2 227 aa9.02□□□□□ -0.97
UPF3A-212ENST00000619079 TRAPPC2LQ9UL33 140 aa9.02□□□□□ -0.97
UPF3A-212ENST00000619079 CEP295Q9C0D2 2601 aa9.02□□□□□ -0.97
UPF3A-212ENST00000619079 TMEM238C9JI98 176 aa9.02□□□□□ -0.97
UPF3A-212ENST00000619079 HSBP1O75506 76 aa9.02□□□□□ -0.97
UPF3A-212ENST00000619079 RBMXL2O75526 392 aaKnown RBP9.02□□□□□ -0.97
UPF3A-212ENST00000619079 APCSP02743 223 aa9.02□□□□□ -0.97
UPF3A-212ENST00000619079 RAC2P15153 192 aa9.02□□□□□ -0.97
UPF3A-212ENST00000619079 CEACAM16Q2WEN9 425 aa9.02□□□□□ -0.97
UPF3A-212ENST00000619079 ATOH7Q8N100 152 aa9.02□□□□□ -0.97
UPF3A-212ENST00000619079 ZDHHC16Q969W1 377 aa9.02□□□□□ -0.97
UPF3A-212ENST00000619079 ST20Q9HBF5 79 aa9.02□□□□□ -0.97
UPF3A-212ENST00000619079 RNF24Q9Y225 148 aa9.02□□□□□ -0.97
UPF3A-212ENST00000619079 YTHDF2Q9Y5A9 579 aaKnown RBP9.02□□□□□ -0.97
UPF3A-212ENST00000619079 AHCTF1Q8WYP5 2266 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 FAM181BA6NEQ2 426 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 C15orf62A8K5M9 175 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 SYNGR1O43759 233 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 LIFP15018 202 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 UBE2G1P62253 170 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 ARF6P62330 175 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 IGF2-ASQ6U949 168 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 C12orf54Q6X4T0 127 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 ZNF596Q8TC21 504 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 HES4Q9HCC6 221 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 LAMA5O15230 3695 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 CACNA1AO00555 2505 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 FER1L5A0AVI2 2057 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 AKAP13Q12802 2813 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 A0A0J9YW62 118 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 ISLRO14498 428 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 FRMD6-AS1P0C7T7 363 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 IGLL1P15814 213 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 KIAA1644Q3SXP7 199 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 TIGITQ495A1 244 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 ZNF497Q6ZNH5 498 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 FAM19A2Q8N3H0 131 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 OR8B3Q8NGG8 313 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 BCL2L2Q92843 193 aaPredicted RBP9.01□□□□□ -0.97
UPF3A-212ENST00000619079 OR8B2Q96RD0 313 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 TAAR6Q96RI8 345 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 SRXN1Q9BYN0 137 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 AKIRIN1Q9H9L7 192 aaPredicted RBP9.01□□□□□ -0.97
UPF3A-212ENST00000619079 ADAMTS20P59510 1910 aa9.01□□□□□ -0.97
UPF3A-212ENST00000619079 RAMP3O60896 148 aa9□□□□□ -0.97
UPF3A-212ENST00000619079 PSG1P11464 419 aa9□□□□□ -0.97
UPF3A-212ENST00000619079 MAJINQ3KP22 176 aa9□□□□□ -0.97
UPF3A-212ENST00000619079 DEFB125Q8N687 156 aa9□□□□□ -0.97
UPF3A-212ENST00000619079 PKIBQ9C010 78 aa9□□□□□ -0.97
UPF3A-212ENST00000619079 CFAP47Q6ZTR5 3102 aa9□□□□□ -0.97
UPF3A-212ENST00000619079 M0R1X1 148 aa9□□□□□ -0.97
UPF3A-212ENST00000619079 TAX1BP3O14907 124 aa9□□□□□ -0.97
UPF3A-212ENST00000619079 ZIC3O60481 467 aa9□□□□□ -0.97
UPF3A-212ENST00000619079 CLDN18P56856 261 aa9□□□□□ -0.97
UPF3A-212ENST00000619079 GNG3P63215 75 aa9□□□□□ -0.97
UPF3A-212ENST00000619079 ZNF816Q0VGE8 651 aaPredicted RBP9□□□□□ -0.97
UPF3A-212ENST00000619079 Q56UQ5 140 aa9□□□□□ -0.97
UPF3A-212ENST00000619079 CENPWQ5EE01 88 aa9□□□□□ -0.97
UPF3A-212ENST00000619079 SPATA46Q5T0L3 261 aa9□□□□□ -0.97
UPF3A-212ENST00000619079 FAM162BQ5T6X4 162 aa9□□□□□ -0.97
UPF3A-212ENST00000619079 LCN12Q6JVE5 192 aa9□□□□□ -0.97
UPF3A-212ENST00000619079 FAM71F2Q6NXP2 309 aa9□□□□□ -0.97
UPF3A-212ENST00000619079 FGFBP3Q8TAT2 258 aa9□□□□□ -0.97
UPF3A-212ENST00000619079 C18orf32Q8TCD1 76 aa9□□□□□ -0.97
UPF3A-212ENST00000619079 WIPF2Q8TF74 440 aaPredicted RBP9□□□□□ -0.97
UPF3A-212ENST00000619079 SAP30LQ9HAJ7 183 aa9□□□□□ -0.97
UPF3A-212ENST00000619079 ZNF331Q9NQX6 463 aaPredicted RBP9□□□□□ -0.97
UPF3A-212ENST00000619079 MBNL3Q9NUK0 354 aaKnown RBP9□□□□□ -0.97
UPF3A-212ENST00000619079 ARHGAP21Q5T5U3 1957 aa8.99□□□□□ -0.97
UPF3A-212ENST00000619079 SMIM27A0A1W2PRY6 76 aa8.99□□□□□ -0.97
UPF3A-212ENST00000619079 HELTA6NFD8 242 aa8.99□□□□□ -0.97
UPF3A-212ENST00000619079 M0R2Z0 102 aa8.99□□□□□ -0.97
UPF3A-212ENST00000619079 RRHO14718 337 aa8.99□□□□□ -0.97
UPF3A-212ENST00000619079 NEURL1O76050 574 aa8.99□□□□□ -0.97
UPF3A-212ENST00000619079 WISP2O76076 250 aa8.99□□□□□ -0.97
UPF3A-212ENST00000619079 TMPRSS3P57727 454 aa8.99□□□□□ -0.97
UPF3A-212ENST00000619079 RPS16P62249 146 aaKnown RBP8.99□□□□□ -0.97
UPF3A-212ENST00000619079 VWA1Q6PCB0 445 aa8.99□□□□□ -0.97
UPF3A-212ENST00000619079 TREML4Q6UXN2 200 aa8.99□□□□□ -0.97
UPF3A-212ENST00000619079 NINJ1Q92982 152 aa8.99□□□□□ -0.97
UPF3A-212ENST00000619079 GGTLC1Q9BX51 225 aa8.99□□□□□ -0.97
UPF3A-212ENST00000619079 MPC1Q9Y5U8 109 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms