RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 TM4SF19Q96DZ7 209 aa12.94□□□□□ -0.34
COL5A1-208ENST00000618395 TNFRSF19Q9NS68 423 aa12.94□□□□□ -0.34
COL5A1-208ENST00000618395 TET1Q8NFU7 2136 aa12.94□□□□□ -0.34
COL5A1-208ENST00000618395 RBBP6Q7Z6E9 1792 aaKnown RBP12.94□□□□□ -0.34
COL5A1-208ENST00000618395 RPL23P62829 140 aaKnown RBP12.94□□□□□ -0.34
COL5A1-208ENST00000618395 FZR1Q9UM11 496 aa12.94□□□□□ -0.34
COL5A1-208ENST00000618395 PLAUP00749 431 aa12.94□□□□□ -0.34
COL5A1-208ENST00000618395 ZNF664Q8N3J9 261 aa12.94□□□□□ -0.34
COL5A1-208ENST00000618395 ALS2Q96Q42 1657 aa12.94□□□□□ -0.34
COL5A1-208ENST00000618395 H7C1H1 209 aa12.94□□□□□ -0.34
COL5A1-208ENST00000618395 FSTP19883 344 aa12.94□□□□□ -0.34
COL5A1-208ENST00000618395 DEFB127Q9H1M4 99 aa12.94□□□□□ -0.34
COL5A1-208ENST00000618395 SS18L2Q9UHA2 77 aa12.94□□□□□ -0.34
COL5A1-208ENST00000618395 F8W1H4 67 aa12.94□□□□□ -0.34
COL5A1-208ENST00000618395 NPSP0C0P6 89 aa12.94□□□□□ -0.34
COL5A1-208ENST00000618395 FAM74A4Q5TZK3 123 aa12.94□□□□□ -0.34
COL5A1-208ENST00000618395 SERGEFQ9UGK8 458 aa12.94□□□□□ -0.34
COL5A1-208ENST00000618395 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.93□□□□□ -0.34
COL5A1-208ENST00000618395 C1QTNF9P0C862 333 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 LRRC61Q9BV99 259 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 TANC2Q9HCD6 1990 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 COL2A1P02458 1487 aaPredicted RBP12.93□□□□□ -0.34
COL5A1-208ENST00000618395 GAGE12HA6NDE8 117 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 COX5BP10606 129 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 ZNF708P17019 499 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 TNFAIP6P98066 277 aaPredicted RBP12.93□□□□□ -0.34
COL5A1-208ENST00000618395 PSMB11A5LHX3 300 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 GAGE12JA6NER3 117 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 WNT9BO14905 357 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 GAGE7O76087 117 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 GAGE12FP0CL80 117 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 GAGE12GP0CL81 117 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 GAGE12IP0CL82 117 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 GAGE4Q13068 117 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 KIAA0040Q15053 153 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 IGKV3D-15A0A087WSY6 115 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 IGKV3D-11A0A0A0MRZ8 115 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 SCO2A0A1W2PP80 73 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 IGKV3-15P01624 115 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 IGKV3-11P04433 115 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 CD300EQ496F6 205 aaPredicted RBP12.93□□□□□ -0.34
COL5A1-208ENST00000618395 TSSC4Q9Y5U2 329 aaPredicted RBP12.93□□□□□ -0.34
COL5A1-208ENST00000618395 TRBV20-1A0A075B6N2 111 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 MPV17L2Q567V2 206 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 SELENOKQ9Y6D0 94 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 MKRN2OSH3BPM6 223 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 COX7A1P24310 79 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 TMEM144Q7Z5S9 345 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 HS3ST3B1Q9Y662 390 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 FGFRL1Q8N441 504 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 SARAFQ96BY9 339 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 NAA38Q9BRA0 125 aaKnown RBP12.93□□□□□ -0.34
COL5A1-208ENST00000618395 PSME4Q14997 1843 aa12.93□□□□□ -0.34
COL5A1-208ENST00000618395 HOXC4P09017 264 aaPredicted RBP12.92□□□□□ -0.34
COL5A1-208ENST00000618395 ZP1P60852 638 aa12.92□□□□□ -0.34
COL5A1-208ENST00000618395 LRP10Q7Z4F1 713 aa12.92□□□□□ -0.34
COL5A1-208ENST00000618395 MRPL43Q8N983 215 aaKnown RBP12.92□□□□□ -0.34
COL5A1-208ENST00000618395 MRPL20Q9BYC9 149 aaKnown RBP12.92□□□□□ -0.34
COL5A1-208ENST00000618395 PDFQ9HBH1 243 aa12.92□□□□□ -0.34
COL5A1-208ENST00000618395 TMEM238C9JI98 176 aa12.92□□□□□ -0.34
COL5A1-208ENST00000618395 PXNP49023 591 aaPredicted RBP12.92□□□□□ -0.34
COL5A1-208ENST00000618395 GAGE2AQ6NT46 116 aa12.92□□□□□ -0.34
COL5A1-208ENST00000618395 SCN10AQ9Y5Y9 1956 aa12.92□□□□□ -0.34
COL5A1-208ENST00000618395 LINC00615Q96LM1 132 aaPredicted RBP12.92□□□□□ -0.34
COL5A1-208ENST00000618395 IGHV3-21A0A0B4J1V1 117 aa12.92□□□□□ -0.34
COL5A1-208ENST00000618395 ZGLP1P0C6A0 271 aa12.92□□□□□ -0.34
COL5A1-208ENST00000618395 SFXN3Q9BWM7 321 aa12.92□□□□□ -0.34
COL5A1-208ENST00000618395 TRBV5-4A0A0C4DH59 114 aa12.92□□□□□ -0.34
COL5A1-208ENST00000618395 EGR1P18146 543 aa12.92□□□□□ -0.34
COL5A1-208ENST00000618395 DYNLRB2Q8TF09 96 aa12.92□□□□□ -0.34
COL5A1-208ENST00000618395 A0A1W2PS18 150 aa12.91□□□□□ -0.34
COL5A1-208ENST00000618395 FCN3O75636 299 aa12.91□□□□□ -0.34
COL5A1-208ENST00000618395 C1QL3Q5VWW1 255 aa12.91□□□□□ -0.34
COL5A1-208ENST00000618395 CLDN14O95500 239 aa12.91□□□□□ -0.34
COL5A1-208ENST00000618395 ICAM4Q14773 271 aa12.91□□□□□ -0.34
COL5A1-208ENST00000618395 NPCDR1Q9BY65 106 aa12.91□□□□□ -0.34
COL5A1-208ENST00000618395 YBX2Q9Y2T7 364 aaKnown RBP12.91□□□□□ -0.34
COL5A1-208ENST00000618395 TRBV24-1A0A075B6N3 115 aa12.91□□□□□ -0.34
COL5A1-208ENST00000618395 SMPXQ9UHP9 88 aa12.91□□□□□ -0.34
COL5A1-208ENST00000618395 ALKAL1Q6UXT8 129 aa12.91□□□□□ -0.34
COL5A1-208ENST00000618395 C6orf15Q6UXA7 325 aaPredicted RBP12.91□□□□□ -0.34
COL5A1-208ENST00000618395 WDR82Q6UXN9 313 aa12.91□□□□□ -0.34
COL5A1-208ENST00000618395 MARS2Q96GW9 593 aaKnown RBP12.91□□□□□ -0.34
COL5A1-208ENST00000618395 NPIPB4C9JG80 1138 aa12.91□□□□□ -0.34
COL5A1-208ENST00000618395 IGHV2-70P01814 119 aa12.91□□□□□ -0.34
COL5A1-208ENST00000618395 CCL17Q92583 94 aa12.91□□□□□ -0.34
COL5A1-208ENST00000618395 FOXD3Q9UJU5 478 aaPredicted RBP12.91□□□□□ -0.34
COL5A1-208ENST00000618395 SIT1Q9Y3P8 196 aa12.91□□□□□ -0.34
COL5A1-208ENST00000618395 K7EQS6 105 aa12.9□□□□□ -0.34
COL5A1-208ENST00000618395 GPX1P07203 203 aa12.9□□□□□ -0.34
COL5A1-208ENST00000618395 HOXB3P14651 431 aaPredicted RBP12.9□□□□□ -0.34
COL5A1-208ENST00000618395 ASIPP42127 132 aa12.9□□□□□ -0.34
COL5A1-208ENST00000618395 RPL8P62917 257 aaKnown RBP12.9□□□□□ -0.34
COL5A1-208ENST00000618395 NANOS3P60323 173 aaKnown RBP12.9□□□□□ -0.34
COL5A1-208ENST00000618395 CD200R1LQ6Q8B3 271 aa12.9□□□□□ -0.34
COL5A1-208ENST00000618395 GUSBP1Q15486 140 aa12.9□□□□□ -0.34
COL5A1-208ENST00000618395 RASL11AQ6T310 242 aa12.9□□□□□ -0.34
COL5A1-208ENST00000618395 ZNF296Q8WUU4 475 aaPredicted RBP12.9□□□□□ -0.34
COL5A1-208ENST00000618395 CSTL1Q9H114 145 aa12.9□□□□□ -0.34
COL5A1-208ENST00000618395 H3BMM0 161 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms