RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 COPZ2Q9P299 210 aa10.46□□□□□ -0.74
LINC00540-202ENST00000616974 RABL2AQ9UBK7 228 aaPredicted RBP10.46□□□□□ -0.74
LINC00540-202ENST00000616974 RABL2BQ9UNT1 228 aa10.46□□□□□ -0.74
LINC00540-202ENST00000616974 DMRT1Q9Y5R6 373 aa10.46□□□□□ -0.74
LINC00540-202ENST00000616974 NUDT19A8MXV4 375 aa10.45□□□□□ -0.74
LINC00540-202ENST00000616974 PLA2G10O15496 165 aa10.45□□□□□ -0.74
LINC00540-202ENST00000616974 TRBV12-3P01733 135 aa10.45□□□□□ -0.74
LINC00540-202ENST00000616974 ELANEP08246 267 aa10.45□□□□□ -0.74
LINC00540-202ENST00000616974 RND3P61587 244 aa10.45□□□□□ -0.74
LINC00540-202ENST00000616974 POU2AF1Q16633 256 aa10.45□□□□□ -0.74
LINC00540-202ENST00000616974 OXLD1Q5BKU9 147 aa10.45□□□□□ -0.74
LINC00540-202ENST00000616974 CXorf66Q5JRM2 361 aaPredicted RBP10.45□□□□□ -0.74
LINC00540-202ENST00000616974 LPCAT3Q6P1A2 487 aa10.45□□□□□ -0.74
LINC00540-202ENST00000616974 Q6ZRM9 215 aa10.45□□□□□ -0.74
LINC00540-202ENST00000616974 ZNF695Q8IW36 515 aa10.45□□□□□ -0.74
LINC00540-202ENST00000616974 MMD2Q8IY49 270 aa10.45□□□□□ -0.74
LINC00540-202ENST00000616974 POC5Q8NA72 575 aa10.45□□□□□ -0.74
LINC00540-202ENST00000616974 ZNF355PQ9NSJ1 428 aa10.45□□□□□ -0.74
LINC00540-202ENST00000616974 ZNF580Q9UK33 172 aa10.45□□□□□ -0.74
LINC00540-202ENST00000616974 AKR1C4P17516 323 aa10.45□□□□□ -0.74
LINC00540-202ENST00000616974 HLA-GP17693 338 aa10.45□□□□□ -0.74
LINC00540-202ENST00000616974 PTBP1P26599 531 aaKnown RBP eCLIP10.45□□□□□ -0.74
LINC00540-202ENST00000616974 TPPP2P59282 170 aa10.45□□□□□ -0.74
LINC00540-202ENST00000616974 PRRT1Q99946 306 aa10.45□□□□□ -0.74
LINC00540-202ENST00000616974 COA4Q9NYJ1 87 aa10.45□□□□□ -0.74
LINC00540-202ENST00000616974 H0Y980 276 aa10.44□□□□□ -0.74
LINC00540-202ENST00000616974 I3L521 148 aa10.44□□□□□ -0.74
LINC00540-202ENST00000616974 PRB2P02812 416 aaPredicted RBP10.44□□□□□ -0.74
LINC00540-202ENST00000616974 P0C879 139 aa10.44□□□□□ -0.74
LINC00540-202ENST00000616974 RPL27AP46776 148 aaKnown RBP10.44□□□□□ -0.74
LINC00540-202ENST00000616974 IFITM3Q01628 133 aa10.44□□□□□ -0.74
LINC00540-202ENST00000616974 TMED4Q7Z7H5 227 aa10.44□□□□□ -0.74
LINC00540-202ENST00000616974 MRPL41Q8IXM3 137 aaKnown RBP10.44□□□□□ -0.74
LINC00540-202ENST00000616974 GDPD1Q8N9F7 314 aa10.44□□□□□ -0.74
LINC00540-202ENST00000616974 TEX50A0A1B0GTY4 177 aa10.43□□□□□ -0.74
LINC00540-202ENST00000616974 IGLC7A0M8Q6 106 aa10.43□□□□□ -0.74
LINC00540-202ENST00000616974 CRYM-AS1A6NIL9 109 aa10.43□□□□□ -0.74
LINC00540-202ENST00000616974 ACTL6BO94805 426 aa10.43□□□□□ -0.74
LINC00540-202ENST00000616974 TRGV3P03979 118 aa10.43□□□□□ -0.74
LINC00540-202ENST00000616974 CDX1P47902 265 aaPredicted RBP10.43□□□□□ -0.74
LINC00540-202ENST00000616974 WT1-ASQ06250 92 aa10.43□□□□□ -0.74
LINC00540-202ENST00000616974 CD300LFQ8TDQ1 290 aa10.43□□□□□ -0.74
LINC00540-202ENST00000616974 ZNF486Q96H40 463 aaPredicted RBP10.43□□□□□ -0.74
LINC00540-202ENST00000616974 NAA60Q9H7X0 242 aa10.43□□□□□ -0.74
LINC00540-202ENST00000616974 COMMD9Q9P000 198 aa10.43□□□□□ -0.74
LINC00540-202ENST00000616974 A0A0B4J293 547 aa10.43□□□□□ -0.74
LINC00540-202ENST00000616974 IGHV3-23P01764 117 aa10.43□□□□□ -0.74
LINC00540-202ENST00000616974 IGLL1P15814 213 aa10.43□□□□□ -0.74
LINC00540-202ENST00000616974 MFAP2P55001 183 aa10.43□□□□□ -0.74
LINC00540-202ENST00000616974 TRIQKQ629K1 86 aa10.43□□□□□ -0.74
LINC00540-202ENST00000616974 TMEM65Q6PI78 240 aa10.43□□□□□ -0.74
LINC00540-202ENST00000616974 OR11H1Q8NG94 326 aa10.43□□□□□ -0.74
LINC00540-202ENST00000616974 ZFAND1Q8TCF1 268 aa10.43□□□□□ -0.74
LINC00540-202ENST00000616974 BORCS5Q969J3 196 aa10.43□□□□□ -0.74
LINC00540-202ENST00000616974 P2RX4Q99571 388 aa10.43□□□□□ -0.74
LINC00540-202ENST00000616974 HINT2Q9BX68 163 aa10.43□□□□□ -0.74
LINC00540-202ENST00000616974 GON7Q9BXV9 100 aa10.43□□□□□ -0.74
LINC00540-202ENST00000616974 PTTG2Q9NZH5 202 aa10.43□□□□□ -0.74
LINC00540-202ENST00000616974 SCP2D1Q9UJQ7 156 aa10.43□□□□□ -0.74
LINC00540-202ENST00000616974 TEX13DA0A0J9YY54 714 aaPredicted RBP10.42□□□□□ -0.74
LINC00540-202ENST00000616974 NXPH3O95157 252 aa10.42□□□□□ -0.74
LINC00540-202ENST00000616974 SERPINE2P07093 398 aa10.42□□□□□ -0.74
LINC00540-202ENST00000616974 UCP1P25874 307 aa10.42□□□□□ -0.74
LINC00540-202ENST00000616974 RAB25P57735 213 aa10.42□□□□□ -0.74
LINC00540-202ENST00000616974 TMEM267Q0VDI3 215 aaPredicted RBP10.42□□□□□ -0.74
LINC00540-202ENST00000616974 TRIM16LQ309B1 348 aa10.42□□□□□ -0.74
LINC00540-202ENST00000616974 FAM219AQ8IW50 185 aa10.42□□□□□ -0.74
LINC00540-202ENST00000616974 LINC00482Q8N8I6 264 aa10.42□□□□□ -0.74
LINC00540-202ENST00000616974 VSTM2AQ8TAG5 236 aa10.42□□□□□ -0.74
LINC00540-202ENST00000616974 FANCD2OSQ96PS1 177 aa10.42□□□□□ -0.74
LINC00540-202ENST00000616974 QTRT1Q9BXR0 403 aaKnown RBP10.42□□□□□ -0.74
LINC00540-202ENST00000616974 TMEM222Q9H0R3 208 aa10.42□□□□□ -0.74
LINC00540-202ENST00000616974 C14orf166Q9Y224 244 aaKnown RBP10.42□□□□□ -0.74
LINC00540-202ENST00000616974 NBEAL2Q6ZNJ1 2754 aa10.42□□□□□ -0.74
LINC00540-202ENST00000616974 IGHV4OR15-8A0A075B7B6 117 aa10.42□□□□□ -0.74
LINC00540-202ENST00000616974 A0A087WW49 117 aa10.42□□□□□ -0.74
LINC00540-202ENST00000616974 OR2J3O76001 311 aa10.42□□□□□ -0.74
LINC00540-202ENST00000616974 SLURP1P55000 103 aa10.42□□□□□ -0.74
LINC00540-202ENST00000616974 COMMD1Q8N668 190 aa10.42□□□□□ -0.74
LINC00540-202ENST00000616974 OR4F17Q8NGA8 305 aa10.42□□□□□ -0.74
LINC00540-202ENST00000616974 OR4F4Q96R69 305 aa10.42□□□□□ -0.74
LINC00540-202ENST00000616974 TBC1D24Q9ULP9 559 aa10.42□□□□□ -0.74
LINC00540-202ENST00000616974 IGHV3-21A0A0B4J1V1 117 aa10.41□□□□□ -0.74
LINC00540-202ENST00000616974 ANKRD34BA5PLL1 514 aa10.41□□□□□ -0.74
LINC00540-202ENST00000616974 CCL24O00175 119 aa10.41□□□□□ -0.74
LINC00540-202ENST00000616974 PF4P02776 101 aa10.41□□□□□ -0.74
LINC00540-202ENST00000616974 ERVK-16P61578 105 aa10.41□□□□□ -0.74
LINC00540-202ENST00000616974 TMEM187Q14656 261 aa10.41□□□□□ -0.74
LINC00540-202ENST00000616974 SURF2Q15527 256 aaPredicted RBP10.41□□□□□ -0.74
LINC00540-202ENST00000616974 SELENOHQ8IZQ5 122 aaKnown RBP10.41□□□□□ -0.74
LINC00540-202ENST00000616974 C4orf3Q8WVX3 66 aa10.41□□□□□ -0.74
LINC00540-202ENST00000616974 UBE2E2Q96LR5 201 aa10.41□□□□□ -0.74
LINC00540-202ENST00000616974 SPIN2AQ99865 258 aa10.41□□□□□ -0.74
LINC00540-202ENST00000616974 SPIN2BQ9BPZ2 258 aa10.41□□□□□ -0.74
LINC00540-202ENST00000616974 TMEM14BQ9NUH8 114 aa10.41□□□□□ -0.74
LINC00540-202ENST00000616974 OR51B2Q9Y5P1 312 aa10.41□□□□□ -0.74
LINC00540-202ENST00000616974 C15orf61A6NNL5 157 aa10.4□□□□□ -0.74
LINC00540-202ENST00000616974 CDS2O95674 445 aa10.4□□□□□ -0.74
LINC00540-202ENST00000616974 CD40LGP29965 261 aa10.4□□□□□ -0.74
LINC00540-202ENST00000616974 AKR1C2P52895 323 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms