RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 SHOXO15266 292 aa14.54□□□□□ -0.08
CDX1-202ENST00000616154 PPYP01298 95 aa14.54□□□□□ -0.08
CDX1-202ENST00000616154 IFNA6P05013 189 aa14.54□□□□□ -0.08
CDX1-202ENST00000616154 AADACP22760 399 aa14.54□□□□□ -0.08
CDX1-202ENST00000616154 TMEM17Q86X19 198 aa14.54□□□□□ -0.08
CDX1-202ENST00000616154 OR51S1Q8NGJ8 323 aa14.54□□□□□ -0.08
CDX1-202ENST00000616154 OR13C8Q8NGS7 320 aa14.54□□□□□ -0.08
CDX1-202ENST00000616154 TERB2Q8NHR7 220 aa14.54□□□□□ -0.08
CDX1-202ENST00000616154 CENPXA8MT69 81 aa14.53□□□□□ -0.08
CDX1-202ENST00000616154 TRGV3P03979 118 aa14.53□□□□□ -0.08
CDX1-202ENST00000616154 UCP3P55916 312 aa14.53□□□□□ -0.08
CDX1-202ENST00000616154 PJVKQ0ZLH3 352 aa14.53□□□□□ -0.08
CDX1-202ENST00000616154 LYSTQ99698 3801 aa14.53□□□□□ -0.08
CDX1-202ENST00000616154 HSD17B10Q99714 261 aaKnown RBP14.53□□□□□ -0.08
CDX1-202ENST00000616154 ZNF2Q9BSG1 426 aaPredicted RBP14.53□□□□□ -0.08
CDX1-202ENST00000616154 ELOVL1Q9BW60 279 aa14.53□□□□□ -0.08
CDX1-202ENST00000616154 CSMD3Q7Z407 3707 aa14.52□□□□□ -0.08
CDX1-202ENST00000616154 CRYZL1O95825 349 aa14.52□□□□□ -0.08
CDX1-202ENST00000616154 TSPAN5P62079 268 aa14.52□□□□□ -0.08
CDX1-202ENST00000616154 RPL30P62888 115 aaKnown RBP14.52□□□□□ -0.08
CDX1-202ENST00000616154 VMA21Q3ZAQ7 101 aa14.52□□□□□ -0.08
CDX1-202ENST00000616154 KCTD9Q7L273 389 aa14.52□□□□□ -0.08
CDX1-202ENST00000616154 FXYD6Q9H0Q3 95 aa14.52□□□□□ -0.08
CDX1-202ENST00000616154 SCP2D1Q9UJQ7 156 aa14.52□□□□□ -0.08
CDX1-202ENST00000616154 LINC00854A0A1B0GVQ3 168 aa14.51□□□□□ -0.09
CDX1-202ENST00000616154 IGLV1-51P01701 117 aa14.51□□□□□ -0.09
CDX1-202ENST00000616154 DEFA1P59665 94 aa14.51□□□□□ -0.09
CDX1-202ENST00000616154 DEFA3P59666 94 aa14.51□□□□□ -0.09
CDX1-202ENST00000616154 PRSS8Q16651 343 aa14.51□□□□□ -0.09
CDX1-202ENST00000616154 ZNF66Q6ZN08 573 aa14.51□□□□□ -0.09
CDX1-202ENST00000616154 POC5Q8NA72 575 aa14.51□□□□□ -0.09
CDX1-202ENST00000616154 GRPEL2Q8TAA5 225 aa14.51□□□□□ -0.09
CDX1-202ENST00000616154 CITED4Q96RK1 184 aa14.51□□□□□ -0.09
CDX1-202ENST00000616154 TM2D3Q9BRN9 247 aa14.51□□□□□ -0.09
CDX1-202ENST00000616154 RANGRFQ9HD47 186 aaPredicted RBP14.51□□□□□ -0.09
CDX1-202ENST00000616154 MCUBQ9NWR8 336 aa14.51□□□□□ -0.09
CDX1-202ENST00000616154 PRELID3BQ9Y3B1 194 aa14.51□□□□□ -0.09
CDX1-202ENST00000616154 LYL1P12980 280 aa14.5□□□□□ -0.09
CDX1-202ENST00000616154 ZP3P21754 424 aa14.5□□□□□ -0.09
CDX1-202ENST00000616154 BRWD1-AS2P59051 145 aa14.5□□□□□ -0.09
CDX1-202ENST00000616154 SURF2Q15527 256 aaPredicted RBP14.5□□□□□ -0.09
CDX1-202ENST00000616154 MZT2BQ6NZ67 158 aa14.5□□□□□ -0.09
CDX1-202ENST00000616154 IDO2Q6ZQW0 420 aa14.5□□□□□ -0.09
CDX1-202ENST00000616154 HAPLN4Q86UW8 402 aa14.5□□□□□ -0.09
CDX1-202ENST00000616154 Q8N1Y9 231 aa14.5□□□□□ -0.09
CDX1-202ENST00000616154 SLC25A21Q9BQT8 299 aaPredicted RBP14.5□□□□□ -0.09
CDX1-202ENST00000616154 C13orf42A0A1B0GVH6 325 aa14.49□□□□□ -0.09
CDX1-202ENST00000616154 A8MZ25 164 aa14.49□□□□□ -0.09
CDX1-202ENST00000616154 FCGR3BO75015 233 aa14.49□□□□□ -0.09
CDX1-202ENST00000616154 NDUFB6O95139 128 aa14.49□□□□□ -0.09
CDX1-202ENST00000616154 SAA1P0DJI8 122 aaPredicted RBP14.49□□□□□ -0.09
CDX1-202ENST00000616154 IGHV4-30-4P0DP06 118 aa14.49□□□□□ -0.09
CDX1-202ENST00000616154 CCR6P51684 374 aa14.49□□□□□ -0.09
CDX1-202ENST00000616154 HERV-K104P61576 105 aa14.49□□□□□ -0.09
CDX1-202ENST00000616154 ZBTB34Q8NCN2 500 aa14.49□□□□□ -0.09
CDX1-202ENST00000616154 DUSP18Q8NEJ0 188 aa14.49□□□□□ -0.09
CDX1-202ENST00000616154 OR4S2Q8NH73 311 aa14.49□□□□□ -0.09
CDX1-202ENST00000616154 RSRP1Q9BUV0 290 aa14.49□□□□□ -0.09
CDX1-202ENST00000616154 ZNF355PQ9NSJ1 428 aa14.49□□□□□ -0.09
CDX1-202ENST00000616154 STARD9Q9P2P6 4700 aa14.49□□□□□ -0.09
CDX1-202ENST00000616154 TNCP24821 2201 aa14.49□□□□□ -0.09
CDX1-202ENST00000616154 A0A0G2JLM5 398 aa14.48□□□□□ -0.09
CDX1-202ENST00000616154 CREBL2O60519 120 aaPredicted RBP14.48□□□□□ -0.09
CDX1-202ENST00000616154 CNIH1O95406 144 aa14.48□□□□□ -0.09
CDX1-202ENST00000616154 PTTG1O95997 202 aa14.48□□□□□ -0.09
CDX1-202ENST00000616154 RBMS2Q15434 407 aaKnown RBP14.48□□□□□ -0.09
CDX1-202ENST00000616154 SCGB2B2Q4G0G5 96 aa14.48□□□□□ -0.09
CDX1-202ENST00000616154 SGPP2Q8IWX5 399 aa14.48□□□□□ -0.09
CDX1-202ENST00000616154 C19orf73Q9NVV2 129 aa14.48□□□□□ -0.09
CDX1-202ENST00000616154 COPZ2Q9P299 210 aa14.48□□□□□ -0.09
CDX1-202ENST00000616154 GPR132Q9UNW8 380 aa14.48□□□□□ -0.09
CDX1-202ENST00000616154 RBFOX2O43251 390 aaKnown RBP eCLIP14.47□□□□□ -0.09
CDX1-202ENST00000616154 GNRHRP30968 328 aa14.47□□□□□ -0.09
CDX1-202ENST00000616154 LPCAT3Q6P1A2 487 aa14.47□□□□□ -0.09
CDX1-202ENST00000616154 NRARPQ7Z6K4 114 aa14.47□□□□□ -0.09
CDX1-202ENST00000616154 PUSL1Q8N0Z8 303 aaKnown RBP14.47□□□□□ -0.09
CDX1-202ENST00000616154 OR5T1Q8NG75 326 aa14.47□□□□□ -0.09
CDX1-202ENST00000616154 SRSF12Q8WXF0 261 aaKnown RBP14.47□□□□□ -0.09
CDX1-202ENST00000616154 SLC5A7Q9GZV3 580 aa14.47□□□□□ -0.09
CDX1-202ENST00000616154 ZNF430Q9H8G1 570 aaPredicted RBP14.47□□□□□ -0.09
CDX1-202ENST00000616154 DNAH1Q9P2D7 4330 aa14.47□□□□□ -0.09
CDX1-202ENST00000616154 KIR2DS2P43631 304 aa14.46□□□□□ -0.09
CDX1-202ENST00000616154 FXYD4P59646 89 aa14.46□□□□□ -0.09
CDX1-202ENST00000616154 KLF5Q13887 457 aaPredicted RBP14.46□□□□□ -0.09
CDX1-202ENST00000616154 MMD2Q8IY49 270 aa14.46□□□□□ -0.09
CDX1-202ENST00000616154 SLC38A6Q8IZM9 456 aa14.46□□□□□ -0.09
CDX1-202ENST00000616154 ADAD2Q8NCV1 583 aaKnown RBP14.46□□□□□ -0.09
CDX1-202ENST00000616154 VSTM2AQ8TAG5 236 aa14.46□□□□□ -0.09
CDX1-202ENST00000616154 MARCH1Q8TCQ1 289 aa14.46□□□□□ -0.09
CDX1-202ENST00000616154 SECTM1Q8WVN6 248 aa14.46□□□□□ -0.09
CDX1-202ENST00000616154 TCTEX1D2Q8WW35 142 aa14.46□□□□□ -0.09
CDX1-202ENST00000616154 ZNF486Q96H40 463 aaPredicted RBP14.46□□□□□ -0.09
CDX1-202ENST00000616154 CCL28Q9NRJ3 127 aa14.46□□□□□ -0.09
CDX1-202ENST00000616154 FAM240BA0A1B0GVZ2 78 aa14.45□□□□□ -0.1
CDX1-202ENST00000616154 TCRBP04435 133 aa14.45□□□□□ -0.1
CDX1-202ENST00000616154 CTSDP07339 412 aaPredicted RBP14.45□□□□□ -0.1
CDX1-202ENST00000616154 RND3P61587 244 aa14.45□□□□□ -0.1
CDX1-202ENST00000616154 ZNF818PQ6ZRF7 136 aa14.45□□□□□ -0.1
CDX1-202ENST00000616154 OR9G4Q8NGQ1 327 aa14.45□□□□□ -0.1
CDX1-202ENST00000616154 TMEM167AQ8TBQ9 72 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms