RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	TM4SF20	Q53R12	229 aa		13.23	□□□□□ -0.29
SHKBP1-223	ENST00000600552	FAM209B	Q5JX69	171 aa		13.23	□□□□□ -0.29
SHKBP1-223	ENST00000600552	ZNF57	Q68EA5	555 aa	Predicted RBP	13.23	□□□□□ -0.29
SHKBP1-223	ENST00000600552	LINC00322	Q6ZN03	302 aa	Predicted RBP	13.23	□□□□□ -0.29
SHKBP1-223	ENST00000600552	SLC16A13	Q7RTY0	426 aa		13.23	□□□□□ -0.29
SHKBP1-223	ENST00000600552	GPHB5	Q86YW7	130 aa		13.23	□□□□□ -0.29
SHKBP1-223	ENST00000600552	OR52B4	Q8NGK2	314 aa		13.23	□□□□□ -0.29
SHKBP1-223	ENST00000600552	CSMD3	Q7Z407	3707 aa		13.23	□□□□□ -0.29
SHKBP1-223	ENST00000600552	LYST	Q99698	3801 aa		13.22	□□□□□ -0.29
SHKBP1-223	ENST00000600552	TRAV3	A0A0B4J244	114 aa		13.22	□□□□□ -0.29
SHKBP1-223	ENST00000600552	MFSD2B	A6NFX1	497 aa		13.22	□□□□□ -0.29
SHKBP1-223	ENST00000600552	LGALS9	O00182	355 aa		13.22	□□□□□ -0.29
SHKBP1-223	ENST00000600552	MRPS14	O60783	128 aa	Known RBP	13.22	□□□□□ -0.29
SHKBP1-223	ENST00000600552	JTB	O76095	146 aa		13.22	□□□□□ -0.29
SHKBP1-223	ENST00000600552	CLEC3B	P05452	202 aa		13.22	□□□□□ -0.29
SHKBP1-223	ENST00000600552	HIST1H1B	P16401	226 aa	Known RBP	13.22	□□□□□ -0.29
SHKBP1-223	ENST00000600552	TMEM17	Q86X19	198 aa		13.22	□□□□□ -0.29
SHKBP1-223	ENST00000600552	TMEM61	Q8N0U2	210 aa		13.22	□□□□□ -0.29
SHKBP1-223	ENST00000600552	OR51H1	Q8NH63	302 aa		13.22	□□□□□ -0.29
SHKBP1-223	ENST00000600552	FCGR1B	Q92637	280 aa		13.22	□□□□□ -0.29
SHKBP1-223	ENST00000600552	MLX	Q9UH92	298 aa		13.22	□□□□□ -0.29
SHKBP1-223	ENST00000600552	TMEM213	A2RRL7	107 aa		13.21	□□□□□ -0.29
SHKBP1-223	ENST00000600552	PPY	P01298	95 aa		13.21	□□□□□ -0.29
SHKBP1-223	ENST00000600552	CRYGC	P07315	174 aa		13.21	□□□□□ -0.29
SHKBP1-223	ENST00000600552	CTRB1	P17538	263 aa		13.21	□□□□□ -0.29
SHKBP1-223	ENST00000600552	GPR183	P32249	361 aa		13.21	□□□□□ -0.29
SHKBP1-223	ENST00000600552	TIMM50	Q3ZCQ8	353 aa		13.21	□□□□□ -0.29
SHKBP1-223	ENST00000600552	CTRB2	Q6GPI1	263 aa		13.21	□□□□□ -0.29
SHKBP1-223	ENST00000600552	BTNL8	Q6UX41	500 aa		13.21	□□□□□ -0.29
SHKBP1-223	ENST00000600552	HOGA1	Q86XE5	327 aa		13.21	□□□□□ -0.29
SHKBP1-223	ENST00000600552	DMBX1	Q8NFW5	382 aa		13.21	□□□□□ -0.29
SHKBP1-223	ENST00000600552	IL17D	Q8TAD2	202 aa		13.21	□□□□□ -0.29
SHKBP1-223	ENST00000600552	DNAH1	Q9P2D7	4330 aa		13.2	□□□□□ -0.3
SHKBP1-223	ENST00000600552	OR2B8P	P59922	312 aa		13.2	□□□□□ -0.3
SHKBP1-223	ENST00000600552	CATR1	Q13166	79 aa		13.2	□□□□□ -0.3
SHKBP1-223	ENST00000600552	NEDD8	Q15843	81 aa		13.2	□□□□□ -0.3
SHKBP1-223	ENST00000600552	ZNF585B	Q52M93	769 aa		13.2	□□□□□ -0.3
SHKBP1-223	ENST00000600552	AADACL3	Q5VUY0	350 aa		13.2	□□□□□ -0.3
SHKBP1-223	ENST00000600552	SLC25A38	Q96DW6	304 aa		13.2	□□□□□ -0.3
SHKBP1-223	ENST00000600552	AIFM2	Q9BRQ8	373 aa		13.2	□□□□□ -0.3
SHKBP1-223	ENST00000600552	HINT2	Q9BX68	163 aa		13.2	□□□□□ -0.3
SHKBP1-223	ENST00000600552	COMMD5	Q9GZQ3	224 aa		13.2	□□□□□ -0.3
SHKBP1-223	ENST00000600552		Q9H521	79 aa		13.2	□□□□□ -0.3
SHKBP1-223	ENST00000600552	DIABLO	Q9NR28	239 aa		13.2	□□□□□ -0.3
SHKBP1-223	ENST00000600552	BET1L	Q9NYM9	111 aa		13.2	□□□□□ -0.3
SHKBP1-223	ENST00000600552	IGLV11-55	A0A075B6I3	123 aa		13.19	□□□□□ -0.3
SHKBP1-223	ENST00000600552	IGHV3-21	A0A0B4J1V1	117 aa		13.19	□□□□□ -0.3
SHKBP1-223	ENST00000600552	CGB1	A6NKQ9	187 aa		13.19	□□□□□ -0.3
SHKBP1-223	ENST00000600552	UPK2	O00526	184 aa		13.19	□□□□□ -0.3
SHKBP1-223	ENST00000600552	HERV-K104	P61576	105 aa		13.19	□□□□□ -0.3
SHKBP1-223	ENST00000600552	PLET1	Q6UQ28	207 aa		13.19	□□□□□ -0.3
SHKBP1-223	ENST00000600552	UNQ9165/PRO28630	Q6UXU0	137 aa		13.19	□□□□□ -0.3
SHKBP1-223	ENST00000600552	RBPMS2	Q6ZRY4	209 aa	Known RBP	13.19	□□□□□ -0.3
SHKBP1-223	ENST00000600552	OR10W1	Q8NGF6	305 aa		13.19	□□□□□ -0.3
SHKBP1-223	ENST00000600552	OR4A5	Q8NH83	315 aa		13.19	□□□□□ -0.3
SHKBP1-223	ENST00000600552	CXorf58	Q96LI9	332 aa		13.19	□□□□□ -0.3
SHKBP1-223	ENST00000600552	AUNIP	Q9H7T9	357 aa		13.19	□□□□□ -0.3
SHKBP1-223	ENST00000600552	IFT46	Q9NQC8	304 aa		13.19	□□□□□ -0.3
SHKBP1-223	ENST00000600552	ETV7	Q9Y603	341 aa		13.19	□□□□□ -0.3
SHKBP1-223	ENST00000600552	TRBV7-1	A0A0A6YYK4	115 aa		13.18	□□□□□ -0.3
SHKBP1-223	ENST00000600552	S1PR2	O95136	353 aa		13.18	□□□□□ -0.3
SHKBP1-223	ENST00000600552	ATP6V1G2	O95670	118 aa		13.18	□□□□□ -0.3
SHKBP1-223	ENST00000600552	HPRT1	P00492	218 aa		13.18	□□□□□ -0.3
SHKBP1-223	ENST00000600552	NQO2	P16083	231 aa		13.18	□□□□□ -0.3
SHKBP1-223	ENST00000600552	SLC25A24	Q6NUK1	477 aa		13.18	□□□□□ -0.3
SHKBP1-223	ENST00000600552	ZNF773	Q6PK81	442 aa		13.18	□□□□□ -0.3
SHKBP1-223	ENST00000600552	ZNF818P	Q6ZRF7	136 aa		13.18	□□□□□ -0.3
SHKBP1-223	ENST00000600552	ZBTB34	Q8NCN2	500 aa		13.18	□□□□□ -0.3
SHKBP1-223	ENST00000600552	TMEM140	Q9NV12	185 aa		13.18	□□□□□ -0.3
SHKBP1-223	ENST00000600552	EPPK1	P58107	5090 aa	Known RBP	13.17	□□□□□ -0.3
SHKBP1-223	ENST00000600552	TAS2R31	P59538	309 aa		13.17	□□□□□ -0.3
SHKBP1-223	ENST00000600552	ANKRD55	Q3KP44	614 aa		13.17	□□□□□ -0.3
SHKBP1-223	ENST00000600552	GGTLC1	Q9BX51	225 aa		13.17	□□□□□ -0.3
SHKBP1-223	ENST00000600552	EHF	Q9NZC4	300 aa		13.17	□□□□□ -0.3
SHKBP1-223	ENST00000600552	UBQLN2	Q9UHD9	624 aa		13.17	□□□□□ -0.3
SHKBP1-223	ENST00000600552	IGHV3OR16-8	A0A075B7F1	116 aa		13.16	□□□□□ -0.3
SHKBP1-223	ENST00000600552	LOC102724200	A0A096LPH7	203 aa	Predicted RBP	13.16	□□□□□ -0.3
SHKBP1-223	ENST00000600552	IGLC7	A0M8Q6	106 aa		13.16	□□□□□ -0.3
SHKBP1-223	ENST00000600552	OR2T8	A6NH00	312 aa		13.16	□□□□□ -0.3
SHKBP1-223	ENST00000600552	OR13C7	P0DN81	318 aa		13.16	□□□□□ -0.3
SHKBP1-223	ENST00000600552	OR1L6	Q8NGR2	347 aa		13.16	□□□□□ -0.3
SHKBP1-223	ENST00000600552	ZNF502	Q8TBZ5	544 aa		13.16	□□□□□ -0.3
SHKBP1-223	ENST00000600552	QTRT1	Q9BXR0	403 aa	Known RBP	13.16	□□□□□ -0.3
SHKBP1-223	ENST00000600552	THYN1	Q9P016	225 aa		13.16	□□□□□ -0.3
SHKBP1-223	ENST00000600552	UFC1	Q9Y3C8	167 aa		13.16	□□□□□ -0.3
SHKBP1-223	ENST00000600552	HYDIN	Q4G0P3	5121 aa		13.16	□□□□□ -0.3
SHKBP1-223	ENST00000600552		A8MWP6	167 aa		13.15	□□□□□ -0.3
SHKBP1-223	ENST00000600552	RBFOX2	O43251	390 aa	Known RBP eCLIP	13.15	□□□□□ -0.3
SHKBP1-223	ENST00000600552	ZNF207	O43670	478 aa	Known RBP	13.15	□□□□□ -0.3
SHKBP1-223	ENST00000600552	PMP2	P02689	132 aa		13.15	□□□□□ -0.3
SHKBP1-223	ENST00000600552	TRAPPC2	P0DI81	140 aa		13.15	□□□□□ -0.3
SHKBP1-223	ENST00000600552	TRAPPC2B	P0DI82	140 aa		13.15	□□□□□ -0.3
SHKBP1-223	ENST00000600552	CBX5	P45973	191 aa		13.15	□□□□□ -0.3
SHKBP1-223	ENST00000600552	RFX2	P48378	723 aa		13.15	□□□□□ -0.3
SHKBP1-223	ENST00000600552	ERVK-16	P61578	105 aa		13.15	□□□□□ -0.3
SHKBP1-223	ENST00000600552	PMS2P11	Q13670	270 aa		13.15	□□□□□ -0.3
SHKBP1-223	ENST00000600552	MSMO1	Q15800	293 aa		13.15	□□□□□ -0.3
SHKBP1-223	ENST00000600552	OR5AP2	Q8NGF4	316 aa		13.15	□□□□□ -0.3
SHKBP1-223	ENST00000600552	GIMAP1	Q8WWP7	306 aa		13.15	□□□□□ -0.3
SHKBP1-223	ENST00000600552	C20orf24	Q9BUV8	137 aa		13.15	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms