RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 MAP2K4P45985 399 aa4.48□□□□□ -1.69
VRK3-220ENST00000600259 OR2B8PP59922 312 aa4.48□□□□□ -1.69
VRK3-220ENST00000600259 NANOS2P60321 138 aaKnown RBP4.48□□□□□ -1.69
VRK3-220ENST00000600259 OR2B11Q5JQS5 317 aa4.48□□□□□ -1.69
VRK3-220ENST00000600259 HES5Q5TA89 166 aa4.48□□□□□ -1.69
VRK3-220ENST00000600259 RBPMS2Q6ZRY4 209 aaKnown RBP4.48□□□□□ -1.69
VRK3-220ENST00000600259 STPG3Q8N7X2 389 aa4.48□□□□□ -1.69
VRK3-220ENST00000600259 TMEM190Q8WZ59 177 aa4.48□□□□□ -1.69
VRK3-220ENST00000600259 GALNT14Q96FL9 552 aa4.48□□□□□ -1.69
VRK3-220ENST00000600259 CXorf58Q96LI9 332 aa4.48□□□□□ -1.69
VRK3-220ENST00000600259 GPHA2Q96T91 129 aa4.48□□□□□ -1.69
VRK3-220ENST00000600259 GINS4Q9BRT9 223 aa4.48□□□□□ -1.69
VRK3-220ENST00000600259 DCUN1D5Q9BTE7 237 aa4.48□□□□□ -1.69
VRK3-220ENST00000600259 DUSP21Q9H596 190 aa4.48□□□□□ -1.69
VRK3-220ENST00000600259 C8orf4Q9NR00 106 aa4.48□□□□□ -1.69
VRK3-220ENST00000600259 BET1LQ9NYM9 111 aa4.48□□□□□ -1.69
VRK3-220ENST00000600259 APLNQ9ULZ1 77 aa4.48□□□□□ -1.69
VRK3-220ENST00000600259 PRELID3BQ9Y3B1 194 aa4.48□□□□□ -1.69
VRK3-220ENST00000600259 RBM7Q9Y580 266 aaKnown RBP4.48□□□□□ -1.69
VRK3-220ENST00000600259 TRAV1-2A0A0B4J238 106 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 DPPA5A6NC42 116 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 IFITM5A6NNB3 132 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 K7EMT4 169 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 TGOLN2O43493 480 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 SSX5O60225 188 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 ARL6IP5O75915 188 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 SLC22A5O76082 557 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 HLA-GP17693 338 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 RAB6AP20340 208 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 DTYMKP23919 212 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 CALRP27797 417 aaKnown RBP4.47□□□□□ -1.69
VRK3-220ENST00000600259 GPR183P32249 361 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 PSMD7P51665 324 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 MFAP2P55001 183 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 OR10A3P58181 314 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 RPL8P62917 257 aaKnown RBP4.47□□□□□ -1.69
VRK3-220ENST00000600259 MED22Q15528 200 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 TRAM1Q15629 374 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 ZNF124Q15973 351 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 SSX1Q16384 188 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 POU2AF1Q16633 256 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 CDNFQ49AH0 187 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 OGFRL1Q5TC84 451 aaPredicted RBP4.47□□□□□ -1.69
VRK3-220ENST00000600259 FAM90A2PQ658T7 463 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 PLET1Q6UQ28 207 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 KCTD9Q7L273 389 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 SSX9Q7RTT3 188 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 NR2C2APQ86WQ0 139 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 SLC38A6Q8IZM9 456 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 TMEM217Q8N7C4 229 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 OR4S2Q8NH73 311 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 VSTM2AQ8TAG5 236 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 VN1R17PQ8TDU5 208 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 UFD1Q92890 307 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 HSD17B10Q99714 261 aaKnown RBP4.47□□□□□ -1.69
VRK3-220ENST00000600259 CHRDL1Q9BU40 450 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 CENPOQ9BU64 300 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 KRTAP4-5Q9BYR2 181 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 CSTL1Q9H114 145 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 UFC1Q9Y3C8 167 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 ETV7Q9Y603 341 aa4.47□□□□□ -1.69
VRK3-220ENST00000600259 A0A075B6Q4 140 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 UPK2O00526 184 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 CASQ2O14958 399 aaPredicted RBP4.46□□□□□ -1.7
VRK3-220ENST00000600259 DHFRP00374 187 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 HRASP01112 189 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 CTSDP07339 412 aaPredicted RBP4.46□□□□□ -1.7
VRK3-220ENST00000600259 GIG44P09565 113 aaPredicted RBP4.46□□□□□ -1.7
VRK3-220ENST00000600259 CTXN2P0C2S0 81 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 RPA2P15927 270 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 GADD45AP24522 165 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 TCTAP57738 103 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 MRPS15P82914 257 aaKnown RBP4.46□□□□□ -1.7
VRK3-220ENST00000600259 WT1-ASQ06250 92 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 MLLT11Q13015 90 aaPredicted RBP4.46□□□□□ -1.7
VRK3-220ENST00000600259 TIMM50Q3ZCQ8 353 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 HACD4Q5VWC8 232 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 CNIH2Q6PI25 160 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 ZNF66Q6ZN08 573 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 APRG1Q8IVJ8 170 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 OR10W1Q8NGF6 305 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 OR5B3Q8NH48 314 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 OR4A5Q8NH83 315 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 C11orf45Q8TAV5 145 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 TCTEX1D2Q8WW35 142 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 MGLLQ99685 303 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 RARRES2Q99969 163 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 SRSF8Q9BRL6 282 aaKnown RBP4.46□□□□□ -1.7
VRK3-220ENST00000600259 DCSTAMPQ9H295 470 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 C11orf68Q9H3H3 251 aaKnown RBP4.46□□□□□ -1.7
VRK3-220ENST00000600259 CCL28Q9NRJ3 127 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 TAS2R8Q9NYW2 309 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 SMPXQ9UHP9 88 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 SPATA2Q9UM82 520 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 MRPS7Q9Y2R9 242 aaKnown RBP4.46□□□□□ -1.7
VRK3-220ENST00000600259 ABCA13Q86UQ4 5058 aa4.46□□□□□ -1.7
VRK3-220ENST00000600259 IGHV3OR16-8A0A075B7F1 116 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 TEX50A0A1B0GTY4 177 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 OR2T8A6NH00 312 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 OR4C46A6NHA9 309 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms