RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 RRHO14718 337 aa12.73□□□□□ -0.37
UPF1-204ENST00000596842 MLNRO43193 412 aa12.73□□□□□ -0.37
UPF1-204ENST00000596842 IGHV1-2P23083 117 aa12.73□□□□□ -0.37
UPF1-204ENST00000596842 CBLN1P23435 193 aa12.73□□□□□ -0.37
UPF1-204ENST00000596842 ZNF90Q03938 601 aa12.73□□□□□ -0.37
UPF1-204ENST00000596842 OR2D3Q8NGH3 330 aa12.73□□□□□ -0.37
UPF1-204ENST00000596842 LRRC29Q8WV35 223 aa12.73□□□□□ -0.37
UPF1-204ENST00000596842 BDP1A6H8Y1 2624 aa12.72□□□□□ -0.37
UPF1-204ENST00000596842 LNP1A1A4G5 178 aa12.72□□□□□ -0.37
UPF1-204ENST00000596842 SPINT2O43291 252 aa12.72□□□□□ -0.37
UPF1-204ENST00000596842 APOA2P02652 100 aa12.72□□□□□ -0.37
UPF1-204ENST00000596842 GCH1P30793 250 aa12.72□□□□□ -0.37
UPF1-204ENST00000596842 CCL11P51671 97 aa12.72□□□□□ -0.37
UPF1-204ENST00000596842 BRWD1-AS2P59051 145 aa12.72□□□□□ -0.37
UPF1-204ENST00000596842 FAM201AQ5SY85 155 aa12.72□□□□□ -0.37
UPF1-204ENST00000596842 C1orf210Q8IVY1 113 aa12.72□□□□□ -0.37
UPF1-204ENST00000596842 CCKARP32238 428 aa12.72□□□□□ -0.37
UPF1-204ENST00000596842 MBNL3Q9NUK0 354 aaKnown RBP12.72□□□□□ -0.37
UPF1-204ENST00000596842 MRPS18CQ9Y3D5 142 aaKnown RBP12.72□□□□□ -0.37
UPF1-204ENST00000596842 NUPR1O60356 82 aa12.72□□□□□ -0.37
UPF1-204ENST00000596842 AMTP48728 403 aa12.72□□□□□ -0.37
UPF1-204ENST00000596842 ZNRF1Q8ND25 227 aa12.72□□□□□ -0.37
UPF1-204ENST00000596842 CDX2Q99626 313 aaPredicted RBP12.72□□□□□ -0.37
UPF1-204ENST00000596842 A0A1W2PNU3 283 aaPredicted RBP12.71□□□□□ -0.37
UPF1-204ENST00000596842 CLDN14O95500 239 aa12.71□□□□□ -0.37
UPF1-204ENST00000596842 MYOD1P15172 320 aa12.71□□□□□ -0.37
UPF1-204ENST00000596842 BRS3P32247 399 aa12.71□□□□□ -0.37
UPF1-204ENST00000596842 ZNF146Q15072 292 aa12.71□□□□□ -0.37
UPF1-204ENST00000596842 ZNF766Q5HY98 468 aa12.71□□□□□ -0.37
UPF1-204ENST00000596842 LINC01551Q86U37 167 aa12.71□□□□□ -0.37
UPF1-204ENST00000596842 TMEM170AQ8WVE7 144 aa12.71□□□□□ -0.37
UPF1-204ENST00000596842 ANAPC16Q96DE5 110 aa12.71□□□□□ -0.37
UPF1-204ENST00000596842 FAM90A26D6RGX4 464 aa12.71□□□□□ -0.37
UPF1-204ENST00000596842 TPPP2P59282 170 aa12.71□□□□□ -0.37
UPF1-204ENST00000596842 ERVK-16P61578 105 aa12.71□□□□□ -0.37
UPF1-204ENST00000596842 ASPHD1Q5U4P2 390 aa12.71□□□□□ -0.37
UPF1-204ENST00000596842 HIPK2Q9H2X6 1198 aa12.71□□□□□ -0.37
UPF1-204ENST00000596842 POLR3KQ9Y2Y1 108 aaPredicted RBP12.71□□□□□ -0.37
UPF1-204ENST00000596842 PIEZO2Q9H5I5 2752 aa12.71□□□□□ -0.38
UPF1-204ENST00000596842 RBFOX2O43251 390 aaKnown RBP eCLIP12.71□□□□□ -0.38
UPF1-204ENST00000596842 SS18L1O75177 396 aaPredicted RBP12.71□□□□□ -0.38
UPF1-204ENST00000596842 TCL1AP56279 114 aa12.71□□□□□ -0.38
UPF1-204ENST00000596842 SOX8P57073 446 aa12.71□□□□□ -0.38
UPF1-204ENST00000596842 FOXF2Q12947 444 aa12.71□□□□□ -0.38
UPF1-204ENST00000596842 SPATA45Q537H7 98 aa12.71□□□□□ -0.38
UPF1-204ENST00000596842 ST6GALNAC6Q969X2 333 aa12.71□□□□□ -0.38
UPF1-204ENST00000596842 ZNF586Q9NXT0 402 aa12.71□□□□□ -0.38
UPF1-204ENST00000596842 NBASA2RRP1 2371 aa12.71□□□□□ -0.38
UPF1-204ENST00000596842 ERVK11-1P61568 191 aa12.7□□□□□ -0.38
UPF1-204ENST00000596842 SPATA31B1PQ5VZV4 182 aa12.7□□□□□ -0.38
UPF1-204ENST00000596842 VWA1Q6PCB0 445 aa12.7□□□□□ -0.38
UPF1-204ENST00000596842 TAAR6Q96RI8 345 aa12.7□□□□□ -0.38
UPF1-204ENST00000596842 PXMP4Q9Y6I8 212 aa12.7□□□□□ -0.38
UPF1-204ENST00000596842 TMEM210A6NLX4 147 aa12.7□□□□□ -0.38
UPF1-204ENST00000596842 C15orf62A8K5M9 175 aa12.7□□□□□ -0.38
UPF1-204ENST00000596842 RPL24P83731 157 aaKnown RBP12.7□□□□□ -0.38
UPF1-204ENST00000596842 HTD2P86397 168 aa12.7□□□□□ -0.38
UPF1-204ENST00000596842 RNF2Q99496 336 aa12.7□□□□□ -0.38
UPF1-204ENST00000596842 MS4A5Q9H3V2 200 aa12.7□□□□□ -0.38
UPF1-204ENST00000596842 ZFP30Q9Y2G7 519 aa12.7□□□□□ -0.38
UPF1-204ENST00000596842 TECTAO75443 2155 aa12.7□□□□□ -0.38
UPF1-204ENST00000596842 SMG1Q96Q15 3661 aaKnown RBP12.7□□□□□ -0.38
UPF1-204ENST00000596842 DIRC3C9JPN6 131 aa12.7□□□□□ -0.38
UPF1-204ENST00000596842 GNG7O60262 68 aa12.7□□□□□ -0.38
UPF1-204ENST00000596842 CIDEAO60543 219 aa12.7□□□□□ -0.38
UPF1-204ENST00000596842 WIPI2Q9Y4P8 454 aa12.7□□□□□ -0.38
UPF1-204ENST00000596842 PCSK5Q92824 1860 aa12.7□□□□□ -0.38
UPF1-204ENST00000596842 CCL25O15444 150 aa12.69□□□□□ -0.38
UPF1-204ENST00000596842 TCTAP57738 103 aa12.69□□□□□ -0.38
UPF1-204ENST00000596842 TIMM9Q9Y5J7 89 aa12.69□□□□□ -0.38
UPF1-204ENST00000596842 ARL2-SNX15V9GYD0 113 aa12.69□□□□□ -0.38
UPF1-204ENST00000596842 DMXL2Q8TDJ6 3036 aa12.69□□□□□ -0.38
UPF1-204ENST00000596842 KIAA1644Q3SXP7 199 aa12.69□□□□□ -0.38
UPF1-204ENST00000596842 ACP7Q6ZNF0 438 aa12.69□□□□□ -0.38
UPF1-204ENST00000596842 BORCS7Q96B45 105 aa12.69□□□□□ -0.38
UPF1-204ENST00000596842 ZPBPQ9BS86 351 aa12.69□□□□□ -0.38
UPF1-204ENST00000596842 SERTAD4Q9NUC0 356 aa12.69□□□□□ -0.38
UPF1-204ENST00000596842 WASHC3Q9Y3C0 194 aa12.69□□□□□ -0.38
UPF1-204ENST00000596842 TNRC6AQ8NDV7 1962 aaKnown RBP12.69□□□□□ -0.38
UPF1-204ENST00000596842 NPIPB11E5RHQ5 1161 aa12.69□□□□□ -0.38
UPF1-204ENST00000596842 C16orf54Q6UWD8 224 aa12.69□□□□□ -0.38
UPF1-204ENST00000596842 GBGT1Q8N5D6 347 aa12.69□□□□□ -0.38
UPF1-204ENST00000596842 OR5AU1Q8NGC0 362 aa12.69□□□□□ -0.38
UPF1-204ENST00000596842 OR4P4Q8NGL7 312 aa12.69□□□□□ -0.38
UPF1-204ENST00000596842 MIEN1Q9BRT3 115 aa12.69□□□□□ -0.38
UPF1-204ENST00000596842 GATA2P23769 480 aaPredicted RBP12.68□□□□□ -0.38
UPF1-204ENST00000596842 PRR31Q5SQ13 230 aa12.68□□□□□ -0.38
UPF1-204ENST00000596842 WDR82Q6UXN9 313 aa12.68□□□□□ -0.38
UPF1-204ENST00000596842 SFRP2Q96HF1 295 aa12.68□□□□□ -0.38
UPF1-204ENST00000596842 PMS2P5A8MQ11 134 aa12.68□□□□□ -0.38
UPF1-204ENST00000596842 K7ERU9 68 aa12.68□□□□□ -0.38
UPF1-204ENST00000596842 PLXNB1O43157 2135 aa12.68□□□□□ -0.38
UPF1-204ENST00000596842 FRMD6-AS1P0C7T7 363 aa12.68□□□□□ -0.38
UPF1-204ENST00000596842 ADMP35318 185 aa12.68□□□□□ -0.38
UPF1-204ENST00000596842 IER3P46695 156 aa12.68□□□□□ -0.38
UPF1-204ENST00000596842 PRRX1P54821 245 aa12.68□□□□□ -0.38
UPF1-204ENST00000596842 SMIM21Q3B7S5 101 aa12.68□□□□□ -0.38
UPF1-204ENST00000596842 ACTL10Q5JWF8 245 aa12.68□□□□□ -0.38
UPF1-204ENST00000596842 UTF1Q5T230 341 aa12.68□□□□□ -0.38
UPF1-204ENST00000596842 C1orf194Q5T5A4 169 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms