RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 VMA21Q3ZAQ7 101 aa11.52□□□□□ -0.57
LIG3-205ENST00000585941 C1orf122Q6ZSJ8 110 aa11.52□□□□□ -0.57
LIG3-205ENST00000585941 SLC24A4Q8NFF2 622 aa11.52□□□□□ -0.57
LIG3-205ENST00000585941 EIF5A2Q9GZV4 153 aaKnown RBP11.52□□□□□ -0.57
LIG3-205ENST00000585941 ONECUT1Q9UBC0 465 aa11.52□□□□□ -0.57
LIG3-205ENST00000585941 FAM96BQ9Y3D0 163 aa11.52□□□□□ -0.57
LIG3-205ENST00000585941 FNDC10F2Z333 226 aa11.51□□□□□ -0.57
LIG3-205ENST00000585941 BUB1B-PAK6H3BSN5 160 aa11.51□□□□□ -0.57
LIG3-205ENST00000585941 NPY1RP25929 384 aa11.51□□□□□ -0.57
LIG3-205ENST00000585941 CD1BP29016 333 aa11.51□□□□□ -0.57
LIG3-205ENST00000585941 RPL8P62917 257 aaKnown RBP11.51□□□□□ -0.57
LIG3-205ENST00000585941 SFT2D1Q8WV19 159 aa11.51□□□□□ -0.57
LIG3-205ENST00000585941 MBD3L1Q8WWY6 194 aa11.51□□□□□ -0.57
LIG3-205ENST00000585941 COMMD5Q9GZQ3 224 aa11.51□□□□□ -0.57
LIG3-205ENST00000585941 TMEM231Q9H6L2 316 aa11.51□□□□□ -0.57
LIG3-205ENST00000585941 RPRMQ9NS64 109 aa11.51□□□□□ -0.57
LIG3-205ENST00000585941 WDR83OSQ9Y284 106 aa11.51□□□□□ -0.57
LIG3-205ENST00000585941 LRBAP50851 2863 aa11.5□□□□□ -0.57
LIG3-205ENST00000585941 C22orf46C9J442 243 aa11.5□□□□□ -0.57
LIG3-205ENST00000585941 INS-IGF2F8WCM5 200 aa11.5□□□□□ -0.57
LIG3-205ENST00000585941 IFNA4P05014 189 aa11.5□□□□□ -0.57
LIG3-205ENST00000585941 SFTA3P0C7M3 94 aa11.5□□□□□ -0.57
LIG3-205ENST00000585941 CDKN1AP38936 164 aa11.5□□□□□ -0.57
LIG3-205ENST00000585941 SP5Q6BEB4 398 aaPredicted RBP11.5□□□□□ -0.57
LIG3-205ENST00000585941 SPSB3Q6PJ21 355 aa11.5□□□□□ -0.57
LIG3-205ENST00000585941 KIR3DL3Q8N743 410 aa11.5□□□□□ -0.57
LIG3-205ENST00000585941 OR1L8Q8NGR8 309 aa11.5□□□□□ -0.57
LIG3-205ENST00000585941 SCRT1Q9BWW7 348 aa11.5□□□□□ -0.57
LIG3-205ENST00000585941 KCNIP2Q9NS61 270 aa11.5□□□□□ -0.57
LIG3-205ENST00000585941 INSIG2Q9Y5U4 225 aa11.5□□□□□ -0.57
LIG3-205ENST00000585941 KPTNQ9Y664 436 aa11.5□□□□□ -0.57
LIG3-205ENST00000585941 RELNP78509 3460 aa11.5□□□□□ -0.57
LIG3-205ENST00000585941 CFAP46Q8IYW2 2715 aa11.5□□□□□ -0.57
LIG3-205ENST00000585941 TEX50A0A1B0GTY4 177 aa11.49□□□□□ -0.57
LIG3-205ENST00000585941 A0A1W2PN81 502 aa11.49□□□□□ -0.57
LIG3-205ENST00000585941 PRSS46E5RG02 174 aa11.49□□□□□ -0.57
LIG3-205ENST00000585941 RRHO14718 337 aa11.49□□□□□ -0.57
LIG3-205ENST00000585941 CHRNA7P36544 502 aa11.49□□□□□ -0.57
LIG3-205ENST00000585941 DIAPH2-AS1Q14236 149 aa11.49□□□□□ -0.57
LIG3-205ENST00000585941 OR11H6Q8NGC7 330 aa11.49□□□□□ -0.57
LIG3-205ENST00000585941 HINT2Q9BX68 163 aa11.49□□□□□ -0.57
LIG3-205ENST00000585941 NPCDR1Q9BY65 106 aa11.49□□□□□ -0.57
LIG3-205ENST00000585941 TNCP24821 2201 aa11.49□□□□□ -0.57
LIG3-205ENST00000585941 CACNA1BQ00975 2339 aa11.49□□□□□ -0.57
LIG3-205ENST00000585941 FAM157AC9JC47 383 aa11.49□□□□□ -0.57
LIG3-205ENST00000585941 OVOL3O00110 214 aa11.49□□□□□ -0.57
LIG3-205ENST00000585941 SCO1O75880 301 aa11.49□□□□□ -0.57
LIG3-205ENST00000585941 SNAPINO95295 136 aa11.49□□□□□ -0.57
LIG3-205ENST00000585941 ADCYAP1P18509 176 aa11.49□□□□□ -0.57
LIG3-205ENST00000585941 PRTN3P24158 256 aa11.49□□□□□ -0.57
LIG3-205ENST00000585941 CEACAM3P40198 252 aa11.49□□□□□ -0.57
LIG3-205ENST00000585941 MRPL41Q8IXM3 137 aaKnown RBP11.49□□□□□ -0.57
LIG3-205ENST00000585941 TEX45Q8NA69 505 aa11.49□□□□□ -0.57
LIG3-205ENST00000585941 RPEQ96AT9 228 aa11.49□□□□□ -0.57
LIG3-205ENST00000585941 RNF5Q99942 180 aa11.49□□□□□ -0.57
LIG3-205ENST00000585941 KLF2Q9Y5W3 355 aaPredicted RBP11.49□□□□□ -0.57
LIG3-205ENST00000585941 USP24Q9UPU5 2620 aa11.48□□□□□ -0.57
LIG3-205ENST00000585941 IGHV1-3A0A0C4DH29 117 aa11.48□□□□□ -0.57
LIG3-205ENST00000585941 RBFOX3A6NFN3 312 aa11.48□□□□□ -0.57
LIG3-205ENST00000585941 ENSAO43768 121 aaKnown RBP11.48□□□□□ -0.57
LIG3-205ENST00000585941 CA2P00918 260 aa11.48□□□□□ -0.57
LIG3-205ENST00000585941 IGLV2-23P01705 113 aa11.48□□□□□ -0.57
LIG3-205ENST00000585941 ERHP84090 104 aaKnown RBP11.48□□□□□ -0.57
LIG3-205ENST00000585941 PMS2P11Q13670 270 aa11.48□□□□□ -0.57
LIG3-205ENST00000585941 C2orf83Q53S99 150 aa11.48□□□□□ -0.57
LIG3-205ENST00000585941 PNKDQ8N490 385 aa11.48□□□□□ -0.57
LIG3-205ENST00000585941 Q8N7P7 452 aa11.48□□□□□ -0.57
LIG3-205ENST00000585941 OR4P4Q8NGL7 312 aa11.48□□□□□ -0.57
LIG3-205ENST00000585941 RCC1LQ96I51 464 aaKnown RBP11.48□□□□□ -0.57
LIG3-205ENST00000585941 NKX6-2Q9C056 277 aaPredicted RBP11.48□□□□□ -0.57
LIG3-205ENST00000585941 SLC35B3Q9H1N7 401 aa11.48□□□□□ -0.57
LIG3-205ENST00000585941 UNKLQ9H9P5 680 aaKnown RBP11.48□□□□□ -0.57
LIG3-205ENST00000585941 NPVFQ9HCQ7 196 aa11.48□□□□□ -0.57
LIG3-205ENST00000585941 NDUFA4L2Q9NRX3 87 aa11.48□□□□□ -0.57
LIG3-205ENST00000585941 SMG1Q96Q15 3661 aaKnown RBP11.47□□□□□ -0.57
LIG3-205ENST00000585941 LY6LH3BQJ8 138 aa11.47□□□□□ -0.57
LIG3-205ENST00000585941 COX7A1P24310 79 aa11.47□□□□□ -0.57
LIG3-205ENST00000585941 BSXQ3C1V8 233 aa11.47□□□□□ -0.57
LIG3-205ENST00000585941 ACOT6Q3I5F7 207 aaPredicted RBP11.47□□□□□ -0.57
LIG3-205ENST00000585941 TMEM170AQ8WVE7 144 aa11.47□□□□□ -0.57
LIG3-205ENST00000585941 SPOCK3Q9BQ16 436 aa11.47□□□□□ -0.57
LIG3-205ENST00000585941 SMCO3A2RU48 225 aa11.46□□□□□ -0.57
LIG3-205ENST00000585941 IGHV2-5P01817 119 aa11.46□□□□□ -0.57
LIG3-205ENST00000585941 HTR1DP28221 377 aa11.46□□□□□ -0.57
LIG3-205ENST00000585941 MAS1LP35410 378 aa11.46□□□□□ -0.57
LIG3-205ENST00000585941 OPRK1P41145 380 aa11.46□□□□□ -0.57
LIG3-205ENST00000585941 PPT1P50897 306 aa11.46□□□□□ -0.57
LIG3-205ENST00000585941 ELLP55199 621 aaPredicted RBP11.46□□□□□ -0.57
LIG3-205ENST00000585941 ARF6P62330 175 aa11.46□□□□□ -0.57
LIG3-205ENST00000585941 CCL20P78556 96 aa11.46□□□□□ -0.57
LIG3-205ENST00000585941 RAB31Q13636 194 aa11.46□□□□□ -0.57
LIG3-205ENST00000585941 ZNF506Q5JVG8 444 aa11.46□□□□□ -0.57
LIG3-205ENST00000585941 FFAR4Q5NUL3 377 aa11.46□□□□□ -0.57
LIG3-205ENST00000585941 ZNF787Q6DD87 383 aa11.46□□□□□ -0.57
LIG3-205ENST00000585941 MOB3BQ86TA1 216 aa11.46□□□□□ -0.57
LIG3-205ENST00000585941 MMD2Q8IY49 270 aa11.46□□□□□ -0.57
LIG3-205ENST00000585941 SUN5Q8TC36 379 aa11.46□□□□□ -0.57
LIG3-205ENST00000585941 ACTR3CQ9C0K3 210 aaPredicted RBP11.46□□□□□ -0.57
LIG3-205ENST00000585941 VSIRQ9H7M9 311 aa11.46□□□□□ -0.57
LIG3-205ENST00000585941 SLC39A9Q9NUM3 307 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms