RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 CTRB2Q6GPI1 263 aa15.49■□□□□ 0.07
SHMT1-209ENST00000582653 CLEC19AQ6UXS0 136 aa15.49■□□□□ 0.07
SHMT1-209ENST00000582653 OR4A5Q8NH83 315 aa15.49■□□□□ 0.07
SHMT1-209ENST00000582653 KCTD12Q96CX2 325 aaKnown RBP15.49■□□□□ 0.07
SHMT1-209ENST00000582653 CCDC140Q96MF4 163 aa15.49■□□□□ 0.07
SHMT1-209ENST00000582653 SACSQ9NZJ4 4579 aa15.49■□□□□ 0.07
SHMT1-209ENST00000582653 RBFOX2O43251 390 aaKnown RBP eCLIP15.48■□□□□ 0.07
SHMT1-209ENST00000582653 GGCTO75223 188 aaKnown RBP15.48■□□□□ 0.07
SHMT1-209ENST00000582653 HPRT1P00492 218 aa15.48■□□□□ 0.07
SHMT1-209ENST00000582653 TAS2R31P59538 309 aa15.48■□□□□ 0.07
SHMT1-209ENST00000582653 OR2B8PP59922 312 aa15.48■□□□□ 0.07
SHMT1-209ENST00000582653 HERV-K104P61576 105 aa15.48■□□□□ 0.07
SHMT1-209ENST00000582653 CD300EQ496F6 205 aaPredicted RBP15.48■□□□□ 0.07
SHMT1-209ENST00000582653 AADACL3Q5VUY0 350 aa15.48■□□□□ 0.07
SHMT1-209ENST00000582653 DHRS11Q6UWP2 260 aa15.48■□□□□ 0.07
SHMT1-209ENST00000582653 ISOC1Q96CN7 298 aa15.48■□□□□ 0.07
SHMT1-209ENST00000582653 AIFM2Q9BRQ8 373 aa15.48■□□□□ 0.07
SHMT1-209ENST00000582653 SELENOKQ9Y6D0 94 aa15.48■□□□□ 0.07
SHMT1-209ENST00000582653 TENM2Q9NT68 2774 aa15.47■□□□□ 0.07
SHMT1-209ENST00000582653 UPK2O00526 184 aa15.47■□□□□ 0.07
SHMT1-209ENST00000582653 S1PR2O95136 353 aa15.47■□□□□ 0.07
SHMT1-209ENST00000582653 DEFA4P12838 97 aa15.47■□□□□ 0.07
SHMT1-209ENST00000582653 ZNF2Q9BSG1 426 aaPredicted RBP15.47■□□□□ 0.07
SHMT1-209ENST00000582653 VCX3AQ9NNX9 186 aa15.47■□□□□ 0.07
SHMT1-209ENST00000582653 ANAPC10Q9UM13 185 aa15.47■□□□□ 0.07
SHMT1-209ENST00000582653 LYSTQ99698 3801 aa15.47■□□□□ 0.07
SHMT1-209ENST00000582653 C2orf70A6NJV1 201 aa15.46■□□□□ 0.07
SHMT1-209ENST00000582653 ZNF785A8K8V0 405 aa15.46■□□□□ 0.07
SHMT1-209ENST00000582653 TNFAIP8O95379 198 aa15.46■□□□□ 0.07
SHMT1-209ENST00000582653 DHFRP00374 187 aa15.46■□□□□ 0.07
SHMT1-209ENST00000582653 IFNA6P05013 189 aa15.46■□□□□ 0.07
SHMT1-209ENST00000582653 FOLR2P14207 255 aa15.46■□□□□ 0.07
SHMT1-209ENST00000582653 NQO2P16083 231 aa15.46■□□□□ 0.07
SHMT1-209ENST00000582653 ARL3P36405 182 aa15.46■□□□□ 0.07
SHMT1-209ENST00000582653 POU2AF1Q16633 256 aa15.46■□□□□ 0.07
SHMT1-209ENST00000582653 DEFB114Q30KQ6 69 aa15.46■□□□□ 0.07
SHMT1-209ENST00000582653 LINC00322Q6ZN03 302 aaPredicted RBP15.46■□□□□ 0.07
SHMT1-209ENST00000582653 LAX1Q8IWV1 398 aa15.46■□□□□ 0.07
SHMT1-209ENST00000582653 DMBX1Q8NFW5 382 aa15.46■□□□□ 0.07
SHMT1-209ENST00000582653 DYNLRB2Q8TF09 96 aa15.46■□□□□ 0.07
SHMT1-209ENST00000582653 TMEM140Q9NV12 185 aa15.46■□□□□ 0.07
SHMT1-209ENST00000582653 IGLV11-55A0A075B6I3 123 aa15.45■□□□□ 0.06
SHMT1-209ENST00000582653 PGLYRP1O75594 196 aaPredicted RBP15.45■□□□□ 0.06
SHMT1-209ENST00000582653 RLN1P04808 185 aa15.45■□□□□ 0.06
SHMT1-209ENST00000582653 EIF4EP06730 217 aaKnown RBP15.45■□□□□ 0.06
SHMT1-209ENST00000582653 PRSS3P35030 304 aa15.45■□□□□ 0.06
SHMT1-209ENST00000582653 NCS1P62166 190 aa15.45■□□□□ 0.06
SHMT1-209ENST00000582653 KLK9Q2XQG4 91 aa15.45■□□□□ 0.06
SHMT1-209ENST00000582653 ZFAND6Q6FIF0 208 aa15.45■□□□□ 0.06
SHMT1-209ENST00000582653 LYSMD2Q8IV50 215 aa15.45■□□□□ 0.06
SHMT1-209ENST00000582653 OR10W1Q8NGF6 305 aa15.45■□□□□ 0.06
SHMT1-209ENST00000582653 OR5H2Q8NGV7 314 aa15.45■□□□□ 0.06
SHMT1-209ENST00000582653 CACNG8Q8WXS5 425 aa15.45■□□□□ 0.06
SHMT1-209ENST00000582653 SLC25A46Q96AG3 418 aa15.45■□□□□ 0.06
SHMT1-209ENST00000582653 EEF1AKMT3Q96AZ1 226 aa15.45■□□□□ 0.06
SHMT1-209ENST00000582653 MOB3AQ96BX8 217 aa15.45■□□□□ 0.06
SHMT1-209ENST00000582653 PLEKHA2Q9HB19 425 aa15.45■□□□□ 0.06
SHMT1-209ENST00000582653 ZC4H2Q9NQZ6 224 aa15.45■□□□□ 0.06
SHMT1-209ENST00000582653 COMMD3Q9UBI1 195 aa15.45■□□□□ 0.06
SHMT1-209ENST00000582653 KLK9Q9UKQ9 250 aa15.45■□□□□ 0.06
SHMT1-209ENST00000582653 IGLC7A0M8Q6 106 aa15.44■□□□□ 0.06
SHMT1-209ENST00000582653 MFSD2BA6NFX1 497 aa15.44■□□□□ 0.06
SHMT1-209ENST00000582653 LGALS9O00182 355 aa15.44■□□□□ 0.06
SHMT1-209ENST00000582653 CD7P09564 240 aa15.44■□□□□ 0.06
SHMT1-209ENST00000582653 HIST1H1BP16401 226 aaKnown RBP15.44■□□□□ 0.06
SHMT1-209ENST00000582653 NAT1P18440 290 aa15.44■□□□□ 0.06
SHMT1-209ENST00000582653 CD81P60033 236 aa15.44■□□□□ 0.06
SHMT1-209ENST00000582653 GPHB5Q86YW7 130 aa15.44■□□□□ 0.06
SHMT1-209ENST00000582653 CD300LFQ8TDQ1 290 aa15.44■□□□□ 0.06
SHMT1-209ENST00000582653 FUNDC2Q9BWH2 189 aa15.44■□□□□ 0.06
SHMT1-209ENST00000582653 COMMD5Q9GZQ3 224 aa15.44■□□□□ 0.06
SHMT1-209ENST00000582653 PLEKHA3Q9HB20 300 aa15.44■□□□□ 0.06
SHMT1-209ENST00000582653 LCE6AA0A183 80 aa15.43■□□□□ 0.06
SHMT1-209ENST00000582653 ZNF320A2RRD8 509 aa15.43■□□□□ 0.06
SHMT1-209ENST00000582653 CLEC3BP05452 202 aa15.43■□□□□ 0.06
SHMT1-209ENST00000582653 CBLN1P23435 193 aa15.43■□□□□ 0.06
SHMT1-209ENST00000582653 HLA-DMAP28067 261 aa15.43■□□□□ 0.06
SHMT1-209ENST00000582653 LPAR6P43657 344 aa15.43■□□□□ 0.06
SHMT1-209ENST00000582653 VBP1P61758 197 aa15.43■□□□□ 0.06
SHMT1-209ENST00000582653 NEURL2Q9BR09 285 aa15.43■□□□□ 0.06
SHMT1-209ENST00000582653 SLC2A8Q9NY64 477 aa15.43■□□□□ 0.06
SHMT1-209ENST00000582653 TEX50A0A1B0GTY4 177 aa15.42■□□□□ 0.06
SHMT1-209ENST00000582653 TPPPO94811 219 aa15.42■□□□□ 0.06
SHMT1-209ENST00000582653 F2RP25116 425 aa15.42■□□□□ 0.06
SHMT1-209ENST00000582653 HRH1P35367 487 aa15.42■□□□□ 0.06
SHMT1-209ENST00000582653 TAS2R46P59540 309 aa15.42■□□□□ 0.06
SHMT1-209ENST00000582653 GUCA2BQ16661 112 aa15.42■□□□□ 0.06
SHMT1-209ENST00000582653 OR6F1Q8NGZ6 308 aa15.42■□□□□ 0.06
SHMT1-209ENST00000582653 FCAMRQ8WWV6 532 aa15.42■□□□□ 0.06
SHMT1-209ENST00000582653 BORCS5Q969J3 196 aa15.42■□□□□ 0.06
SHMT1-209ENST00000582653 WDR89Q96FK6 387 aaPredicted RBP15.42■□□□□ 0.06
SHMT1-209ENST00000582653 QTRT1Q9BXR0 403 aaKnown RBP15.42■□□□□ 0.06
SHMT1-209ENST00000582653 FXYD6Q9H0Q3 95 aa15.42■□□□□ 0.06
SHMT1-209ENST00000582653 GAR1Q9NY12 217 aaKnown RBP15.42■□□□□ 0.06
SHMT1-209ENST00000582653 TECRQ9NZ01 308 aaKnown RBP15.42■□□□□ 0.06
SHMT1-209ENST00000582653 COMMD9Q9P000 198 aa15.42■□□□□ 0.06
SHMT1-209ENST00000582653 CEPT1Q9Y6K0 416 aa15.42■□□□□ 0.06
SHMT1-209ENST00000582653 STARD9Q9P2P6 4700 aa15.42■□□□□ 0.06
SHMT1-209ENST00000582653 TRBV7-1A0A0A6YYK4 115 aa15.41■□□□□ 0.06
SHMT1-209ENST00000582653 KRASP01116 189 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 113.4 ms