RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 OR9G9P0C7N8 305 aa7.48□□□□□ -1.21
CCDC40-214ENST00000575431 PF4V1P10720 104 aa7.48□□□□□ -1.21
CCDC40-214ENST00000575431 G6PCP35575 357 aa7.48□□□□□ -1.21
CCDC40-214ENST00000575431 RAB9AP51151 201 aa7.48□□□□□ -1.21
CCDC40-214ENST00000575431 UBE2MP61081 183 aaKnown RBP7.48□□□□□ -1.21
CCDC40-214ENST00000575431 RPL23AP62750 156 aaKnown RBP7.48□□□□□ -1.21
CCDC40-214ENST00000575431 SRPXP78539 464 aa7.48□□□□□ -1.21
CCDC40-214ENST00000575431 SSBP2P81877 361 aaPredicted RBP7.48□□□□□ -1.21
CCDC40-214ENST00000575431 NSUN5P1Q3KNT7 163 aa7.48□□□□□ -1.21
CCDC40-214ENST00000575431 TMEM128Q5BJH2 165 aa7.48□□□□□ -1.21
CCDC40-214ENST00000575431 ZNF695Q8IW36 515 aa7.48□□□□□ -1.21
CCDC40-214ENST00000575431 FAM219AQ8IW50 185 aa7.48□□□□□ -1.21
CCDC40-214ENST00000575431 MRPL41Q8IXM3 137 aaKnown RBP7.48□□□□□ -1.21
CCDC40-214ENST00000575431 OR5B3Q8NH48 314 aa7.48□□□□□ -1.21
CCDC40-214ENST00000575431 FAM110DQ8TAY7 271 aaPredicted RBP7.48□□□□□ -1.21
CCDC40-214ENST00000575431 MYOZ3Q8TDC0 251 aa7.48□□□□□ -1.21
CCDC40-214ENST00000575431 IL22RA2Q969J5 263 aa7.48□□□□□ -1.21
CCDC40-214ENST00000575431 RRNAD1Q96FB5 475 aaKnown RBP7.48□□□□□ -1.21
CCDC40-214ENST00000575431 SEC22AQ96IW7 307 aa7.48□□□□□ -1.21
CCDC40-214ENST00000575431 TP53RKQ96S44 253 aa7.48□□□□□ -1.21
CCDC40-214ENST00000575431 CACFD1Q9UGQ2 172 aa7.48□□□□□ -1.21
CCDC40-214ENST00000575431 ZNF257Q9Y2Q1 563 aa7.48□□□□□ -1.21
CCDC40-214ENST00000575431 A0A0G2JLM5 398 aa7.47□□□□□ -1.21
CCDC40-214ENST00000575431 ADARB2-AS1A8MUL3 147 aa7.47□□□□□ -1.21
CCDC40-214ENST00000575431 NUDT19A8MXV4 375 aa7.47□□□□□ -1.21
CCDC40-214ENST00000575431 LYRM1O43325 122 aa7.47□□□□□ -1.21
CCDC40-214ENST00000575431 NDUFB6O95139 128 aa7.47□□□□□ -1.21
CCDC40-214ENST00000575431 RPLP1P05386 114 aaKnown RBP7.47□□□□□ -1.21
CCDC40-214ENST00000575431 OR5AC1P0C628 307 aa7.47□□□□□ -1.21
CCDC40-214ENST00000575431 AKR1C4P17516 323 aa7.47□□□□□ -1.21
CCDC40-214ENST00000575431 AKR1C2P52895 323 aa7.47□□□□□ -1.21
CCDC40-214ENST00000575431 OR2B8PP59922 312 aa7.47□□□□□ -1.21
CCDC40-214ENST00000575431 SP6Q3SY56 376 aa7.47□□□□□ -1.21
CCDC40-214ENST00000575431 CENPSQ8N2Z9 138 aa7.47□□□□□ -1.21
CCDC40-214ENST00000575431 TTC9CQ8N5M4 171 aa7.47□□□□□ -1.21
CCDC40-214ENST00000575431 OR1L8Q8NGR8 309 aa7.47□□□□□ -1.21
CCDC40-214ENST00000575431 OR4A16Q8NH70 328 aa7.47□□□□□ -1.21
CCDC40-214ENST00000575431 GLYATL2Q8WU03 294 aa7.47□□□□□ -1.21
CCDC40-214ENST00000575431 RBPMSQ93062 196 aaKnown RBP7.47□□□□□ -1.21
CCDC40-214ENST00000575431 TMEM56Q96MV1 263 aa7.47□□□□□ -1.21
CCDC40-214ENST00000575431 ZNF355PQ9NSJ1 428 aa7.47□□□□□ -1.21
CCDC40-214ENST00000575431 VSIG4Q9Y279 399 aa7.47□□□□□ -1.21
CCDC40-214ENST00000575431 A0A1W2PRX2 142 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 C15orf61A6NNL5 157 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 NPIPB5A8MRT5 1133 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 CYB5BO43169 146 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 SOX15O60248 233 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 IGKV1-39P01597 117 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 IGKV1D-39P04432 117 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 TRAPPC2P0DI81 140 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 TRAPPC2BP0DI82 140 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 HIST1H1BP16401 226 aaKnown RBP7.46□□□□□ -1.22
CCDC40-214ENST00000575431 MYCNOSP40205 109 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 FAM209BQ5JX69 171 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 ASPHD1Q5U4P2 390 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 MZT2BQ6NZ67 158 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 TREML4Q6UXN2 200 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 TMED4Q7Z7H5 227 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 ZNF429Q86V71 674 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 LGI3Q8N145 548 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 ZNF491Q8N8L2 437 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 KLHL30-AS1Q8NEE0 82 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 OR5T1Q8NG75 326 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 RNASE11Q8TAA1 199 aaKnown RBP7.46□□□□□ -1.22
CCDC40-214ENST00000575431 C4orf3Q8WVX3 66 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 LSM10Q969L4 123 aaKnown RBP7.46□□□□□ -1.22
CCDC40-214ENST00000575431 TMEM230Q96A57 120 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 USMG5Q96IX5 58 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 FYTTD1Q96QD9 318 aaKnown RBP7.46□□□□□ -1.22
CCDC40-214ENST00000575431 QTRT1Q9BXR0 403 aaKnown RBP7.46□□□□□ -1.22
CCDC40-214ENST00000575431 COA4Q9NYJ1 87 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 OR51B2Q9Y5P1 312 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 TMEM56-RWDD3S4R434 201 aa7.46□□□□□ -1.22
CCDC40-214ENST00000575431 TRAV3A0A0B4J244 114 aa7.45□□□□□ -1.22
CCDC40-214ENST00000575431 TEX50A0A1B0GTY4 177 aa7.45□□□□□ -1.22
CCDC40-214ENST00000575431 LINC00854A0A1B0GVQ3 168 aa7.45□□□□□ -1.22
CCDC40-214ENST00000575431 DUXBA0A1W2PPF3 345 aa7.45□□□□□ -1.22
CCDC40-214ENST00000575431 TEX22C9J3V5 150 aa7.45□□□□□ -1.22
CCDC40-214ENST00000575431 PLA2G10O15496 165 aa7.45□□□□□ -1.22
CCDC40-214ENST00000575431 RBMXL2O75526 392 aaKnown RBP7.45□□□□□ -1.22
CCDC40-214ENST00000575431 PF4P02776 101 aa7.45□□□□□ -1.22
CCDC40-214ENST00000575431 TRGV3P03979 118 aa7.45□□□□□ -1.22
CCDC40-214ENST00000575431 CRYGCP07315 174 aa7.45□□□□□ -1.22
CCDC40-214ENST00000575431 VAMP1P23763 118 aa7.45□□□□□ -1.22
CCDC40-214ENST00000575431 PSMB6P28072 239 aa7.45□□□□□ -1.22
CCDC40-214ENST00000575431 CCR6P51684 374 aa7.45□□□□□ -1.22
CCDC40-214ENST00000575431 RAB25P57735 213 aa7.45□□□□□ -1.22
CCDC40-214ENST00000575431 TPPP2P59282 170 aa7.45□□□□□ -1.22
CCDC40-214ENST00000575431 HSPE1P61604 102 aaKnown RBP7.45□□□□□ -1.22
CCDC40-214ENST00000575431 RUNX1Q01196 453 aa7.45□□□□□ -1.22
CCDC40-214ENST00000575431 C10orf55Q5SWW7 151 aa7.45□□□□□ -1.22
CCDC40-214ENST00000575431 TMEM268Q5VZI3 342 aa7.45□□□□□ -1.22
CCDC40-214ENST00000575431 SELENOHQ8IZQ5 122 aaKnown RBP7.45□□□□□ -1.22
CCDC40-214ENST00000575431 ADAD2Q8NCV1 583 aaKnown RBP7.45□□□□□ -1.22
CCDC40-214ENST00000575431 OR1L6Q8NGR2 347 aa7.45□□□□□ -1.22
CCDC40-214ENST00000575431 PDCD10Q9BUL8 212 aa7.45□□□□□ -1.22
CCDC40-214ENST00000575431 KLK15Q9H2R5 256 aa7.45□□□□□ -1.22
CCDC40-214ENST00000575431 NDUFA4L2Q9NRX3 87 aa7.45□□□□□ -1.22
CCDC40-214ENST00000575431 TMEM14BQ9NUH8 114 aa7.45□□□□□ -1.22
CCDC40-214ENST00000575431 THYN1Q9P016 225 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms