RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 IGHV2OR16-5A0A0B4J2B6 119 aa12.9□□□□□ -0.34
NUP88-207ENST00000573584 CD33P20138 364 aa12.9□□□□□ -0.34
NUP88-207ENST00000573584 MZT1Q08AG7 82 aa12.9□□□□□ -0.34
NUP88-207ENST00000573584 C1orf229Q6ZS94 237 aaPredicted RBP12.9□□□□□ -0.34
NUP88-207ENST00000573584 C9orf106Q8NAJ2 232 aa12.9□□□□□ -0.34
NUP88-207ENST00000573584 C1orf162Q8NEQ5 155 aaPredicted RBP12.9□□□□□ -0.34
NUP88-207ENST00000573584 TBX15Q96SF7 602 aa12.9□□□□□ -0.34
NUP88-207ENST00000573584 ATG101Q9BSB4 218 aa12.9□□□□□ -0.34
NUP88-207ENST00000573584 TRGV8A0A0C4DH27 118 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 SRRM5B3KS81 715 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 LOC400499M0QZD8 3231 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 NCOR1O75376 2440 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 MT-CO2P00403 227 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 SELENOTP62341 195 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 RAB31Q13636 194 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 OR4P4Q8NGL7 312 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 OR4S2Q8NH73 311 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 ZCCHC14Q8WYQ9 949 aaKnown RBP12.89□□□□□ -0.35
NUP88-207ENST00000573584 LEAP2Q969E1 77 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 OPN3Q9H1Y3 402 aaPredicted RBP12.89□□□□□ -0.35
NUP88-207ENST00000573584 F2RL2O00254 374 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 IGHG3P01860 377 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 NPY1RP25929 384 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 KIR2DS2P43631 304 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 CR1LQ2VPA4 569 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 UTF1Q5T230 341 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 HES3Q5TGS1 186 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 SLC24A4Q8NFF2 622 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 FAM216AQ8WUB2 273 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 UHRF2Q96PU4 802 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 NEU1Q99519 415 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 MRPL18Q9H0U6 180 aaKnown RBP12.89□□□□□ -0.35
NUP88-207ENST00000573584 IGHV1-18A0A0C4DH31 117 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 KIR2DL5BA0A0G2JN68 375 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 KIR2DL5BA0A0G2JPC4 375 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 C15orf61A6NNL5 157 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 A8MXE2 369 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 M0R143 59 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 CRISP2P16562 243 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 KIR2DL5AQ8N109 375 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 DDB2Q92466 427 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 TMEM106BQ9NUM4 274 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 TP53TG3Q9ULZ0 132 aa12.89□□□□□ -0.35
NUP88-207ENST00000573584 IGLV1-44P01699 117 aa12.88□□□□□ -0.35
NUP88-207ENST00000573584 TPPP2P59282 170 aa12.88□□□□□ -0.35
NUP88-207ENST00000573584 ENY2Q9NPA8 101 aa12.88□□□□□ -0.35
NUP88-207ENST00000573584 TRAV9-1A0A075B6T8 112 aa12.88□□□□□ -0.35
NUP88-207ENST00000573584 FOSL1P15407 271 aa12.88□□□□□ -0.35
NUP88-207ENST00000573584 RPL29P47914 159 aaKnown RBP12.88□□□□□ -0.35
NUP88-207ENST00000573584 HSPE1P61604 102 aaKnown RBP12.88□□□□□ -0.35
NUP88-207ENST00000573584 PAFAH1B2P68402 229 aa12.88□□□□□ -0.35
NUP88-207ENST00000573584 OR4A47Q6IF82 309 aa12.88□□□□□ -0.35
NUP88-207ENST00000573584 GCSAMQ8N6F7 178 aa12.88□□□□□ -0.35
NUP88-207ENST00000573584 CALYQ9NYX4 217 aa12.88□□□□□ -0.35
NUP88-207ENST00000573584 TRGV10A0A0A0MS01 117 aa12.87□□□□□ -0.35
NUP88-207ENST00000573584 C9JCJ5 164 aa12.87□□□□□ -0.35
NUP88-207ENST00000573584 CA2P00918 260 aa12.87□□□□□ -0.35
NUP88-207ENST00000573584 CGAP01215 116 aa12.87□□□□□ -0.35
NUP88-207ENST00000573584 ZNF124Q15973 351 aa12.87□□□□□ -0.35
NUP88-207ENST00000573584 LRP11Q86VZ4 500 aa12.87□□□□□ -0.35
NUP88-207ENST00000573584 C11orf52Q96A22 123 aa12.87□□□□□ -0.35
NUP88-207ENST00000573584 EAF1Q96JC9 268 aaPredicted RBP12.87□□□□□ -0.35
NUP88-207ENST00000573584 HINT2Q9BX68 163 aa12.87□□□□□ -0.35
NUP88-207ENST00000573584 TECTAO75443 2155 aa12.87□□□□□ -0.35
NUP88-207ENST00000573584 A0A1B0GWJ7 208 aa12.87□□□□□ -0.35
NUP88-207ENST00000573584 FCN1O00602 326 aa12.87□□□□□ -0.35
NUP88-207ENST00000573584 CDX4O14627 284 aaPredicted RBP12.87□□□□□ -0.35
NUP88-207ENST00000573584 SERF1AO75920 110 aa12.87□□□□□ -0.35
NUP88-207ENST00000573584 ACTL6BO94805 426 aa12.87□□□□□ -0.35
NUP88-207ENST00000573584 IGFBP2P18065 325 aa12.87□□□□□ -0.35
NUP88-207ENST00000573584 LGALS4P56470 323 aa12.87□□□□□ -0.35
NUP88-207ENST00000573584 TOMM20LQ6UXN7 152 aa12.87□□□□□ -0.35
NUP88-207ENST00000573584 Q6ZWC4 215 aa12.87□□□□□ -0.35
NUP88-207ENST00000573584 OR1L6Q8NGR2 347 aa12.87□□□□□ -0.35
NUP88-207ENST00000573584 TET2Q6N021 2002 aaPredicted RBP12.87□□□□□ -0.35
NUP88-207ENST00000573584 IER3P46695 156 aa12.86□□□□□ -0.35
NUP88-207ENST00000573584 RAB7AP51149 207 aa12.86□□□□□ -0.35
NUP88-207ENST00000573584 LINC00310P59036 64 aa12.86□□□□□ -0.35
NUP88-207ENST00000573584 KRTCAP3Q53RY4 240 aa12.86□□□□□ -0.35
NUP88-207ENST00000573584 ALKBH2Q6NS38 261 aa12.86□□□□□ -0.35
NUP88-207ENST00000573584 TMEM14BQ9NUH8 114 aa12.86□□□□□ -0.35
NUP88-207ENST00000573584 FOXA2Q9Y261 457 aaPredicted RBP12.86□□□□□ -0.35
NUP88-207ENST00000573584 LY96Q9Y6Y9 160 aa12.86□□□□□ -0.35
NUP88-207ENST00000573584 CCL11P51671 97 aa12.86□□□□□ -0.35
NUP88-207ENST00000573584 OR5I1Q13606 314 aa12.86□□□□□ -0.35
NUP88-207ENST00000573584 RPEL1Q2QD12 228 aa12.86□□□□□ -0.35
NUP88-207ENST00000573584 CT45A1Q5HYN5 189 aa12.86□□□□□ -0.35
NUP88-207ENST00000573584 MIR17HGQ75NE6 70 aa12.86□□□□□ -0.35
NUP88-207ENST00000573584 BAGE3Q86Y29 109 aa12.86□□□□□ -0.35
NUP88-207ENST00000573584 BAGE2Q86Y30 109 aa12.86□□□□□ -0.35
NUP88-207ENST00000573584 MMD2Q8IY49 270 aa12.86□□□□□ -0.35
NUP88-207ENST00000573584 CT45A3Q8NHU0 189 aa12.86□□□□□ -0.35
NUP88-207ENST00000573584 SAA2-SAA4A0A096LPE2 208 aa12.85□□□□□ -0.35
NUP88-207ENST00000573584 FRMD6-AS1P0C7T7 363 aa12.85□□□□□ -0.35
NUP88-207ENST00000573584 SAA2P0DJI9 122 aaPredicted RBP12.85□□□□□ -0.35
NUP88-207ENST00000573584 MYOD1P15172 320 aa12.85□□□□□ -0.35
NUP88-207ENST00000573584 RANP62826 216 aaKnown RBP12.85□□□□□ -0.35
NUP88-207ENST00000573584 PRR20EP86478 221 aa12.85□□□□□ -0.35
NUP88-207ENST00000573584 PRR20CP86479 221 aa12.85□□□□□ -0.35
NUP88-207ENST00000573584 PRR20DP86480 221 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms