RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 CHRNB4P30926 498 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 RELBQ01201 579 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 OR13D1Q8NGV5 346 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 ZNF714Q96N38 554 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 ENY2Q9NPA8 101 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 AURKAIP1Q9NWT8 199 aaPredicted RBP8.14□□□□□ -1.11
VPS53-206ENST00000570359 ZNF835Q9Y2P0 537 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 CACNA1BQ00975 2339 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 SRRM4A7MD48 611 aaKnown RBP8.13□□□□□ -1.11
VPS53-206ENST00000570359 RAB7AP51149 207 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 DLK1P80370 383 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 FABP9Q0Z7S8 132 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 CA5BP1Q8WTZ4 195 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 PINX1Q96BK5 328 aaKnown RBP8.13□□□□□ -1.11
VPS53-206ENST00000570359 MALSU1Q96EH3 234 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 NGBQ9NPG2 151 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 IGHV1-69-2A0A0G2JMI3 117 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 LOC102723971A0A1B0GUV8 181 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 PMS2P5A8MQ11 134 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 VSTM5A8MXK1 200 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 CLN5O75503 358 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 OR2C1O95371 312 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 WNT2P09544 360 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 CGB3P0DN86 165 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 CGB7P0DN87 165 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 BCL2P10415 239 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 CD1BP29016 333 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 RAB4BP61018 213 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 LRRC10Q5BKY1 277 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 C10orf55Q5SWW7 151 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 MIC13Q5XKP0 118 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 C1orf87Q8N0U7 546 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 NECAP1Q8NC96 275 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 OR10W1Q8NGF6 305 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 CIB3Q96Q77 187 aaPredicted RBP8.13□□□□□ -1.11
VPS53-206ENST00000570359 PFDN5Q99471 154 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 NIPSNAP3BQ9BS92 247 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 MS4A5Q9H3V2 200 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 PKD1L2Q7Z442 2459 aa8.13□□□□□ -1.11
VPS53-206ENST00000570359 A0A1W2PRD5 423 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 A0A1W2PRF3 423 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 A0A1W2PRM7 423 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 ACTL6BO94805 426 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 CT45A6P0DMU7 189 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 CT45A5P0DMU8 189 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 CT45A7P0DMV0 189 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 MDKP21741 143 aaPredicted RBP8.12□□□□□ -1.11
VPS53-206ENST00000570359 COX7A1P24310 79 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 MLANAQ16655 118 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 C3orf36Q3SXR2 165 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 LBHQ53QV2 105 aaPredicted RBP8.12□□□□□ -1.11
VPS53-206ENST00000570359 OR4F5Q8NH21 305 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 RAB24Q969Q5 203 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 HIST1H2BAQ96A08 127 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 HARBI1Q96MB7 349 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 OR4F4Q96R69 305 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 VKORC1Q9BQB6 163 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 RPUSD1Q9UJJ7 312 aaKnown RBP8.12□□□□□ -1.11
VPS53-206ENST00000570359 OR51B2Q9Y5P1 312 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 SPG11Q96JI7 2443 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 SIAH2O43255 324 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 CA2P00918 260 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 HNF1AP20823 631 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 SPCS3P61009 180 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 CST9LP1Q5W188 147 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 MUC15Q8N387 334 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 TOLLIPQ9H0E2 274 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 GAL3ST2Q9H3Q3 398 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 JKAMPQ9P055 326 aa8.12□□□□□ -1.11
VPS53-206ENST00000570359 AP4M1O00189 453 aa8.11□□□□□ -1.11
VPS53-206ENST00000570359 PPIHO43447 177 aaKnown RBP8.11□□□□□ -1.11
VPS53-206ENST00000570359 PAGE4O60829 102 aa8.11□□□□□ -1.11
VPS53-206ENST00000570359 REG1AP05451 166 aa8.11□□□□□ -1.11
VPS53-206ENST00000570359 SNRPCP09234 159 aaKnown RBP8.11□□□□□ -1.11
VPS53-206ENST00000570359 SAA1P0DJI8 122 aaPredicted RBP8.11□□□□□ -1.11
VPS53-206ENST00000570359 GATA2P23769 480 aaPredicted RBP8.11□□□□□ -1.11
VPS53-206ENST00000570359 THBS3P49746 956 aa8.11□□□□□ -1.11
VPS53-206ENST00000570359 TAS2R60P59551 318 aa8.11□□□□□ -1.11
VPS53-206ENST00000570359 ADIRFQ15847 76 aa8.11□□□□□ -1.11
VPS53-206ENST00000570359 PDLIM3Q53GG5 364 aaPredicted RBP8.11□□□□□ -1.11
VPS53-206ENST00000570359 ZNF506Q5JVG8 444 aa8.11□□□□□ -1.11
VPS53-206ENST00000570359 NCMAPQ5T1S8 102 aa8.11□□□□□ -1.11
VPS53-206ENST00000570359 TMEM170AQ8WVE7 144 aa8.11□□□□□ -1.11
VPS53-206ENST00000570359 DDB2Q92466 427 aa8.11□□□□□ -1.11
VPS53-206ENST00000570359 CD81P60033 236 aa8.11□□□□□ -1.11
VPS53-206ENST00000570359 RTL8BQ17RB0 113 aa8.11□□□□□ -1.11
VPS53-206ENST00000570359 TEX36Q5VZQ5 186 aa8.11□□□□□ -1.11
VPS53-206ENST00000570359 ZNF439Q8NDP4 499 aa8.11□□□□□ -1.11
VPS53-206ENST00000570359 PSMG3Q9BT73 122 aaPredicted RBP8.11□□□□□ -1.11
VPS53-206ENST00000570359 GGACTQ9BVM4 153 aa8.11□□□□□ -1.11
VPS53-206ENST00000570359 LINC00312Q9Y6C7 94 aa8.11□□□□□ -1.11
VPS53-206ENST00000570359 A0A1W2PPV4 95 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 BTBD17A6NE02 478 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 C15orf61A6NNL5 157 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 J3QR06 171 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 SFTPCP11686 197 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 NPY1RP25929 384 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 RPS10P46783 165 aaKnown RBP8.1□□□□□ -1.11
VPS53-206ENST00000570359 SERF2P84101 59 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 C1QL4Q86Z23 238 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms