RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 SMIM15Q7Z3B0 74 aa9.59□□□□□ -0.87
CLN3-238ENST00000569430 STPG3Q8N7X2 389 aa9.59□□□□□ -0.87
CLN3-238ENST00000569430 RND1Q92730 232 aa9.59□□□□□ -0.87
CLN3-238ENST00000569430 SPSB4Q96A44 273 aa9.59□□□□□ -0.87
CLN3-238ENST00000569430 KLF13Q9Y2Y9 288 aaPredicted RBP9.59□□□□□ -0.87
CLN3-238ENST00000569430 ZNF716A6NP11 495 aa9.59□□□□□ -0.87
CLN3-238ENST00000569430 J3QR06 171 aa9.59□□□□□ -0.87
CLN3-238ENST00000569430 MPDU1O75352 247 aa9.59□□□□□ -0.87
CLN3-238ENST00000569430 APELAP0DMC3 54 aa9.59□□□□□ -0.87
CLN3-238ENST00000569430 CDKN1AP38936 164 aa9.59□□□□□ -0.87
CLN3-238ENST00000569430 OR2M7Q8NG81 312 aa9.59□□□□□ -0.87
CLN3-238ENST00000569430 LPAR2Q9HBW0 351 aa9.59□□□□□ -0.87
CLN3-238ENST00000569430 TCF19Q9Y242 345 aa9.59□□□□□ -0.87
CLN3-238ENST00000569430 LNP1A1A4G5 178 aa9.59□□□□□ -0.87
CLN3-238ENST00000569430 CA1P00915 261 aaPredicted RBP9.59□□□□□ -0.87
CLN3-238ENST00000569430 RPL30P62888 115 aaKnown RBP9.59□□□□□ -0.87
CLN3-238ENST00000569430 GABRA6Q16445 453 aa9.59□□□□□ -0.87
CLN3-238ENST00000569430 TMEM42Q69YG0 159 aa9.59□□□□□ -0.87
CLN3-238ENST00000569430 ZNF355PQ9NSJ1 428 aa9.59□□□□□ -0.87
CLN3-238ENST00000569430 HLA-DQA1P01909 254 aa9.58□□□□□ -0.88
CLN3-238ENST00000569430 RPL39P5Q59GN2 51 aa9.58□□□□□ -0.88
CLN3-238ENST00000569430 DNLZQ5SXM8 178 aa9.58□□□□□ -0.88
CLN3-238ENST00000569430 LCN12Q6JVE5 192 aa9.58□□□□□ -0.88
CLN3-238ENST00000569430 UNQ5815/PRO19632Q6UWF5 114 aa9.58□□□□□ -0.88
CLN3-238ENST00000569430 CT55Q8WUE5 264 aa9.58□□□□□ -0.88
CLN3-238ENST00000569430 TXNDC17Q9BRA2 123 aa9.58□□□□□ -0.88
CLN3-238ENST00000569430 PKIBQ9C010 78 aa9.58□□□□□ -0.88
CLN3-238ENST00000569430 TWSG1Q9GZX9 223 aa9.58□□□□□ -0.88
CLN3-238ENST00000569430 TMEM140Q9NV12 185 aa9.58□□□□□ -0.88
CLN3-238ENST00000569430 CYC1P08574 325 aa9.58□□□□□ -0.88
CLN3-238ENST00000569430 HTR1DP28221 377 aa9.58□□□□□ -0.88
CLN3-238ENST00000569430 GPR6P46095 362 aaPredicted RBP9.58□□□□□ -0.88
CLN3-238ENST00000569430 FBXW9Q5XUX1 488 aa9.58□□□□□ -0.88
CLN3-238ENST00000569430 FAM53AQ6NSI3 398 aaPredicted RBP9.58□□□□□ -0.88
CLN3-238ENST00000569430 OR8B2Q96RD0 313 aa9.58□□□□□ -0.88
CLN3-238ENST00000569430 GSX1Q9H4S2 264 aaPredicted RBP9.58□□□□□ -0.88
CLN3-238ENST00000569430 HES4Q9HCC6 221 aa9.58□□□□□ -0.88
CLN3-238ENST00000569430 ELOVL5Q9NYP7 299 aa9.58□□□□□ -0.88
CLN3-238ENST00000569430 TRGV10A0A0A0MS01 117 aa9.58□□□□□ -0.88
CLN3-238ENST00000569430 IL6RP08887 468 aaPredicted RBP9.58□□□□□ -0.88
CLN3-238ENST00000569430 MAS1LP35410 378 aa9.58□□□□□ -0.88
CLN3-238ENST00000569430 TIMP3P35625 211 aa9.58□□□□□ -0.88
CLN3-238ENST00000569430 COX19Q49B96 90 aa9.58□□□□□ -0.88
CLN3-238ENST00000569430 SH3BGRL2Q9UJC5 107 aa9.58□□□□□ -0.88
CLN3-238ENST00000569430 TNFSF4P23510 183 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 BPIFB3P59826 476 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 PCSK4Q6UW60 755 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 HAPLN4Q86UW8 402 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 TMEM191AQ9H0A3 160 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 GNB4Q9HAV0 340 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 NBEAQ8NFP9 2946 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 SNAI2O43623 268 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 SFTPCP11686 197 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 UQCRFS1P47985 274 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 SUB1P53999 127 aaKnown RBP eCLIP9.57□□□□□ -0.88
CLN3-238ENST00000569430 NHLH1Q02575 133 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 ZNF585BQ52M93 769 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 TMEM14EPQ6UXP3 125 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 PRSS3P2Q8NHM4 247 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 IMMP1LQ96LU5 166 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 CHRDL1Q9BU40 450 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 CXXC4Q9H2H0 198 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 IGHV3-21A0A0B4J1V1 117 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 H3BTX0 84 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 M0R1B8 84 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 IGKV1-39P01597 117 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 IGKV1D-39P04432 117 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 CT45A6P0DMU7 189 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 CT45A5P0DMU8 189 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 CT45A7P0DMV0 189 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 IGFBP2P18065 325 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 FCER1GP30273 86 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 PRDX2P32119 198 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 ZNF83P51522 516 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 SSPNQ14714 243 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 CT45A1Q5HYN5 189 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 FA2HQ7L5A8 372 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 TMEM251Q8N6I4 163 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 TMEM178AQ8NBL3 297 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 OR10X1Q8NGY0 326 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 CT45A3Q8NHU0 189 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 NABP2Q9BQ15 211 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 HSPB7Q9UBY9 170 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 THADAQ6YHU6 1953 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 TTC28Q96AY4 2481 aa9.57□□□□□ -0.88
CLN3-238ENST00000569430 OR5AL1P0C617 328 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 NTF4P34130 210 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 RELBQ01201 579 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 TDRG1Q3Y452 100 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 AARDQ4LEZ3 155 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 KRTCAP3Q53RY4 240 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 ASCL4Q6XD76 172 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 MIR17HGQ75NE6 70 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 ZNF114Q8NC26 417 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 SSC4DQ8WTU2 575 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 FER1L6-AS2Q96M78 137 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 IGLV3-19P01714 112 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 UMODP07911 640 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 ADH4P08319 380 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 TMEM11P17152 192 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms