RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 KRTAP9-2Q9BYQ4 174 aa8.47□□□□□ -1.05
CLK3-222ENST00000568232 RIMS4Q9H426 269 aaPredicted RBP8.47□□□□□ -1.05
CLK3-222ENST00000568232 DAZ1Q9NQZ3 744 aaKnown RBP8.47□□□□□ -1.05
CLK3-222ENST00000568232 IGLV11-55A0A075B6I3 123 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 C15orf61A6NNL5 157 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 BET1O15155 118 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 SOCS1O15524 211 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 CREBL2O60519 120 aaPredicted RBP8.46□□□□□ -1.06
CLK3-222ENST00000568232 IFNA21P01568 189 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 IFNA17P01571 189 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 CD74P04233 296 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 GNAO1P09471 354 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 ZNF735P0CB33 412 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 DEFA4P12838 97 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 DUTP33316 252 aaKnown RBP8.46□□□□□ -1.06
CLK3-222ENST00000568232 RPL27AP46776 148 aaKnown RBP8.46□□□□□ -1.06
CLK3-222ENST00000568232 GABARAPL2P60520 117 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 KLK9Q2XQG4 91 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 YIF1BQ5BJH7 314 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 IGSF11Q5DX21 431 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 APH1BQ8WW43 257 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 GGHQ92820 318 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 PGLYRP3Q96LB9 341 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 CXorf58Q96LI9 332 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 RNF2Q99496 336 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 UQCC2Q9BRT2 126 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 DCUN1D5Q9BTE7 237 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 C20orf24Q9BUV8 137 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 TM2D1Q9BX74 207 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 BABAM2Q9NXR7 383 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 GHRLQ9UBU3 117 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 KLK9Q9UKQ9 250 aa8.46□□□□□ -1.06
CLK3-222ENST00000568232 LOC100130705A0A1B0GUX0 176 aa8.45□□□□□ -1.06
CLK3-222ENST00000568232 TRDCB7Z8K6 153 aa8.45□□□□□ -1.06
CLK3-222ENST00000568232 RAB27BO00194 218 aa8.45□□□□□ -1.06
CLK3-222ENST00000568232 TGOLN2O43493 480 aa8.45□□□□□ -1.06
CLK3-222ENST00000568232 FCGR3BO75015 233 aa8.45□□□□□ -1.06
CLK3-222ENST00000568232 GIG44P09565 113 aaPredicted RBP8.45□□□□□ -1.06
CLK3-222ENST00000568232 INAFM2P0DMQ5 153 aa8.45□□□□□ -1.06
CLK3-222ENST00000568232 HIST1H1BP16401 226 aaKnown RBP8.45□□□□□ -1.06
CLK3-222ENST00000568232 SRMP19623 302 aa8.45□□□□□ -1.06
CLK3-222ENST00000568232 TPBGQ13641 420 aa8.45□□□□□ -1.06
CLK3-222ENST00000568232 OR2B11Q5JQS5 317 aa8.45□□□□□ -1.06
CLK3-222ENST00000568232 LEMD1Q68G75 181 aa8.45□□□□□ -1.06
CLK3-222ENST00000568232 LAIR2Q6ISS4 152 aa8.45□□□□□ -1.06
CLK3-222ENST00000568232 GBGT1Q8N5D6 347 aa8.45□□□□□ -1.06
CLK3-222ENST00000568232 FAM210AQ96ND0 272 aa8.45□□□□□ -1.06
CLK3-222ENST00000568232 DERL3Q96Q80 235 aa8.45□□□□□ -1.06
CLK3-222ENST00000568232 OR51E2Q9H255 320 aa8.45□□□□□ -1.06
CLK3-222ENST00000568232 MRPS18AQ9NVS2 196 aaKnown RBP8.45□□□□□ -1.06
CLK3-222ENST00000568232 MGAT4AQ9UM21 535 aa8.45□□□□□ -1.06
CLK3-222ENST00000568232 TPRKBQ9Y3C4 175 aa8.45□□□□□ -1.06
CLK3-222ENST00000568232 ETV7Q9Y603 341 aa8.45□□□□□ -1.06
CLK3-222ENST00000568232 X6R8D5 127 aa8.45□□□□□ -1.06
CLK3-222ENST00000568232 IGHV3-49A0A0A0MS15 119 aa8.44□□□□□ -1.06
CLK3-222ENST00000568232 PNMA8CA0A1B0GUJ8 204 aa8.44□□□□□ -1.06
CLK3-222ENST00000568232 OR2T8A6NH00 312 aa8.44□□□□□ -1.06
CLK3-222ENST00000568232 WBP4O75554 376 aaKnown RBP8.44□□□□□ -1.06
CLK3-222ENST00000568232 DHFRP00374 187 aa8.44□□□□□ -1.06
CLK3-222ENST00000568232 SMIM18P0DKX4 95 aa8.44□□□□□ -1.06
CLK3-222ENST00000568232 MIFP14174 115 aa8.44□□□□□ -1.06
CLK3-222ENST00000568232 ALDH3B2P48448 385 aa8.44□□□□□ -1.06
CLK3-222ENST00000568232 PSMD7P51665 324 aa8.44□□□□□ -1.06
CLK3-222ENST00000568232 SMN1Q16637 294 aaKnown RBP8.44□□□□□ -1.06
CLK3-222ENST00000568232 TMPRSS11AQ6ZMR5 421 aa8.44□□□□□ -1.06
CLK3-222ENST00000568232 GPR141Q7Z602 305 aa8.44□□□□□ -1.06
CLK3-222ENST00000568232 NKAIN3Q8N8D7 197 aa8.44□□□□□ -1.06
CLK3-222ENST00000568232 RHOXF1Q8NHV9 184 aa8.44□□□□□ -1.06
CLK3-222ENST00000568232 C12orf4Q9NQ89 552 aa8.44□□□□□ -1.06
CLK3-222ENST00000568232 SCN3BQ9NY72 215 aa8.44□□□□□ -1.06
CLK3-222ENST00000568232 PTTG2Q9NZH5 202 aa8.44□□□□□ -1.06
CLK3-222ENST00000568232 RBM7Q9Y580 266 aaKnown RBP8.44□□□□□ -1.06
CLK3-222ENST00000568232 SRRM2Q9UQ35 2752 aaKnown RBP8.43□□□□□ -1.06
CLK3-222ENST00000568232 CGB1A6NKQ9 187 aa8.43□□□□□ -1.06
CLK3-222ENST00000568232 EPM2AB3EWF7 344 aa8.43□□□□□ -1.06
CLK3-222ENST00000568232 NOL3O60936 208 aaKnown RBP8.43□□□□□ -1.06
CLK3-222ENST00000568232 KBTBD11O94819 623 aa8.43□□□□□ -1.06
CLK3-222ENST00000568232 UBBP0CG47 229 aa8.43□□□□□ -1.06
CLK3-222ENST00000568232 CMC4P56277 68 aaPredicted RBP8.43□□□□□ -1.06
CLK3-222ENST00000568232 TMEM50BP56557 158 aa8.43□□□□□ -1.06
CLK3-222ENST00000568232 QRFPP83859 136 aa8.43□□□□□ -1.06
CLK3-222ENST00000568232 ZNF773Q6PK81 442 aa8.43□□□□□ -1.06
CLK3-222ENST00000568232 ADTRPQ96IZ2 230 aa8.43□□□□□ -1.06
CLK3-222ENST00000568232 Q96MT0 163 aa8.43□□□□□ -1.06
CLK3-222ENST00000568232 CMSS1Q9BQ75 279 aaKnown RBP8.43□□□□□ -1.06
CLK3-222ENST00000568232 LPAR5Q9H1C0 372 aa8.43□□□□□ -1.06
CLK3-222ENST00000568232 FGF20Q9NP95 211 aaPredicted RBP8.43□□□□□ -1.06
CLK3-222ENST00000568232 CLEC2DQ9UHP7 191 aa8.43□□□□□ -1.06
CLK3-222ENST00000568232 SMPXQ9UHP9 88 aa8.43□□□□□ -1.06
CLK3-222ENST00000568232 KRTAP9-6A0A140TA67 174 aa8.42□□□□□ -1.06
CLK3-222ENST00000568232 CCDC160A6NGH7 325 aa8.42□□□□□ -1.06
CLK3-222ENST00000568232 ZNF705EA8MWA4 302 aaPredicted RBP8.42□□□□□ -1.06
CLK3-222ENST00000568232 TMEM14DPA8MWL7 114 aa8.42□□□□□ -1.06
CLK3-222ENST00000568232 J3QRK9 145 aa8.42□□□□□ -1.06
CLK3-222ENST00000568232 CHEK1O14757 476 aa8.42□□□□□ -1.06
CLK3-222ENST00000568232 FABP7O15540 132 aa8.42□□□□□ -1.06
CLK3-222ENST00000568232 PTBP1P26599 531 aaKnown RBP eCLIP8.42□□□□□ -1.06
CLK3-222ENST00000568232 SERPINB10P48595 397 aa8.42□□□□□ -1.06
CLK3-222ENST00000568232 RPL30P62888 115 aaKnown RBP8.42□□□□□ -1.06
CLK3-222ENST00000568232 CNPY1Q3B7I2 92 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms