RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 OR4A5Q8NH83 315 aa15.23■□□□□ 0.03
CLN3-225ENST00000566824 MYOZ3Q8TDC0 251 aa15.23■□□□□ 0.03
CLN3-225ENST00000566824 MS4A10Q96PG2 267 aa15.23■□□□□ 0.03
CLN3-225ENST00000566824 TEX13DA0A0J9YY54 714 aaPredicted RBP15.22■□□□□ 0.03
CLN3-225ENST00000566824 SERPINE2P07093 398 aa15.22■□□□□ 0.03
CLN3-225ENST00000566824 AKR1C4P17516 323 aa15.22■□□□□ 0.03
CLN3-225ENST00000566824 UCP1P25874 307 aa15.22■□□□□ 0.03
CLN3-225ENST00000566824 RPL27AP46776 148 aaKnown RBP15.22■□□□□ 0.03
CLN3-225ENST00000566824 ERVK-16P61578 105 aa15.22■□□□□ 0.03
CLN3-225ENST00000566824 DEFA5Q01523 94 aa15.22■□□□□ 0.03
CLN3-225ENST00000566824 TMEM267Q0VDI3 215 aaPredicted RBP15.22■□□□□ 0.03
CLN3-225ENST00000566824 CXorf66Q5JRM2 361 aaPredicted RBP15.22■□□□□ 0.03
CLN3-225ENST00000566824 GLYATL2Q8WU03 294 aa15.22■□□□□ 0.03
CLN3-225ENST00000566824 DEDD2Q8WXF8 326 aa15.22■□□□□ 0.03
CLN3-225ENST00000566824 FYTTD1Q96QD9 318 aaKnown RBP15.22■□□□□ 0.03
CLN3-225ENST00000566824 PHB2Q99623 299 aa15.22■□□□□ 0.03
CLN3-225ENST00000566824 AIFM2Q9BRQ8 373 aa15.22■□□□□ 0.03
CLN3-225ENST00000566824 A0A0G2JRQ6 117 aa15.21■□□□□ 0.03
CLN3-225ENST00000566824 RBMXL2O75526 392 aaKnown RBP15.21■□□□□ 0.03
CLN3-225ENST00000566824 ACTL6BO94805 426 aa15.21■□□□□ 0.03
CLN3-225ENST00000566824 P0C879 139 aa15.21■□□□□ 0.03
CLN3-225ENST00000566824 CD40LGP29965 261 aa15.21■□□□□ 0.03
CLN3-225ENST00000566824 RAB9AP51151 201 aa15.21■□□□□ 0.03
CLN3-225ENST00000566824 OR2B8PP59922 312 aa15.21■□□□□ 0.03
CLN3-225ENST00000566824 C8orf86Q6ZUL3 223 aa15.21■□□□□ 0.03
CLN3-225ENST00000566824 TMED4Q7Z7H5 227 aa15.21■□□□□ 0.03
CLN3-225ENST00000566824 S100ZQ8WXG8 99 aa15.21■□□□□ 0.03
CLN3-225ENST00000566824 TMEM222Q9H0R3 208 aa15.21■□□□□ 0.03
CLN3-225ENST00000566824 GNB4Q9HAV0 340 aa15.21■□□□□ 0.03
CLN3-225ENST00000566824 FLVCR2Q9UPI3 526 aa15.21■□□□□ 0.03
CLN3-225ENST00000566824 TEX50A0A1B0GTY4 177 aa15.2■□□□□ 0.02
CLN3-225ENST00000566824 CREBL2O60519 120 aaPredicted RBP15.2■□□□□ 0.02
CLN3-225ENST00000566824 PRH1P02810 166 aa15.2■□□□□ 0.02
CLN3-225ENST00000566824 AREGP15514 252 aa15.2■□□□□ 0.02
CLN3-225ENST00000566824 MAS1LP35410 378 aa15.2■□□□□ 0.02
CLN3-225ENST00000566824 TRIM16LQ309B1 348 aa15.2■□□□□ 0.02
CLN3-225ENST00000566824 ETV3LQ6ZN32 361 aa15.2■□□□□ 0.02
CLN3-225ENST00000566824 ZNF491Q8N8L2 437 aa15.2■□□□□ 0.02
CLN3-225ENST00000566824 KLHL30-AS1Q8NEE0 82 aa15.2■□□□□ 0.02
CLN3-225ENST00000566824 DUX3Q96PT4 197 aa15.2■□□□□ 0.02
CLN3-225ENST00000566824 CCDC32Q9BV29 185 aa15.2■□□□□ 0.02
CLN3-225ENST00000566824 NAP1L6A6NFF2 107 aa15.19■□□□□ 0.02
CLN3-225ENST00000566824 IFITM3Q01628 133 aa15.19■□□□□ 0.02
CLN3-225ENST00000566824 TMEM187Q14656 261 aa15.19■□□□□ 0.02
CLN3-225ENST00000566824 ZNF846Q147U1 533 aa15.19■□□□□ 0.02
CLN3-225ENST00000566824 DEFB136Q30KP8 78 aa15.19■□□□□ 0.02
CLN3-225ENST00000566824 SELENOHQ8IZQ5 122 aaKnown RBP15.19■□□□□ 0.02
CLN3-225ENST00000566824 OR10W1Q8NGF6 305 aa15.19■□□□□ 0.02
CLN3-225ENST00000566824 OR5M8Q8NGP6 311 aa15.19■□□□□ 0.02
CLN3-225ENST00000566824 SCGB3A2Q96PL1 93 aa15.19■□□□□ 0.02
CLN3-225ENST00000566824 OR5B12Q96R08 314 aa15.19■□□□□ 0.02
CLN3-225ENST00000566824 SLC25A21Q9BQT8 299 aaPredicted RBP15.19■□□□□ 0.02
CLN3-225ENST00000566824 ZFP57Q9NU63 452 aa15.19■□□□□ 0.02
CLN3-225ENST00000566824 NDUFB6O95139 128 aa15.18■□□□□ 0.02
CLN3-225ENST00000566824 CDS2O95674 445 aa15.18■□□□□ 0.02
CLN3-225ENST00000566824 REG1AP05451 166 aa15.18■□□□□ 0.02
CLN3-225ENST00000566824 CDX1P47902 265 aaPredicted RBP15.18■□□□□ 0.02
CLN3-225ENST00000566824 TMEM65Q6PI78 240 aa15.18■□□□□ 0.02
CLN3-225ENST00000566824 TREML4Q6UXN2 200 aa15.18■□□□□ 0.02
CLN3-225ENST00000566824 H2BFWTQ7Z2G1 175 aa15.18■□□□□ 0.02
CLN3-225ENST00000566824 ZNF695Q8IW36 515 aa15.18■□□□□ 0.02
CLN3-225ENST00000566824 SGPP2Q8IWX5 399 aa15.18■□□□□ 0.02
CLN3-225ENST00000566824 CADM3Q8N126 398 aa15.18■□□□□ 0.02
CLN3-225ENST00000566824 SPIN2AQ99865 258 aa15.18■□□□□ 0.02
CLN3-225ENST00000566824 SPIN2BQ9BPZ2 258 aa15.18■□□□□ 0.02
CLN3-225ENST00000566824 ALX4Q9H161 411 aaPredicted RBP15.18■□□□□ 0.02
CLN3-225ENST00000566824 ZNF355PQ9NSJ1 428 aa15.18■□□□□ 0.02
CLN3-225ENST00000566824 COA4Q9NYJ1 87 aa15.18■□□□□ 0.02
CLN3-225ENST00000566824 TBC1D24Q9ULP9 559 aa15.18■□□□□ 0.02
CLN3-225ENST00000566824 IGLC7A0M8Q6 106 aa15.17■□□□□ 0.02
CLN3-225ENST00000566824 NUDT19A8MXV4 375 aa15.17■□□□□ 0.02
CLN3-225ENST00000566824 LYRM1O43325 122 aa15.17■□□□□ 0.02
CLN3-225ENST00000566824 TRGV3P03979 118 aa15.17■□□□□ 0.02
CLN3-225ENST00000566824 RBMS2Q15434 407 aaKnown RBP15.17■□□□□ 0.02
CLN3-225ENST00000566824 Q6ZRM9 215 aa15.17■□□□□ 0.02
CLN3-225ENST00000566824 TTC9CQ8N5M4 171 aa15.17■□□□□ 0.02
CLN3-225ENST00000566824 GALNT14Q96FL9 552 aa15.17■□□□□ 0.02
CLN3-225ENST00000566824 RAX2Q96IS3 184 aa15.17■□□□□ 0.02
CLN3-225ENST00000566824 C7orf50Q9BRJ6 194 aaKnown RBP15.17■□□□□ 0.02
CLN3-225ENST00000566824 WDR12Q9GZL7 423 aaKnown RBP15.17■□□□□ 0.02
CLN3-225ENST00000566824 OR51B2Q9Y5P1 312 aa15.17■□□□□ 0.02
CLN3-225ENST00000566824 A0A0B4J293 547 aa15.17■□□□□ 0.02
CLN3-225ENST00000566824 C15orf61A6NNL5 157 aa15.17■□□□□ 0.02
CLN3-225ENST00000566824 IGHV3-11P01762 117 aa15.17■□□□□ 0.02
CLN3-225ENST00000566824 TPPP2P59282 170 aa15.17■□□□□ 0.02
CLN3-225ENST00000566824 DHODHQ02127 395 aa15.17■□□□□ 0.02
CLN3-225ENST00000566824 TMEM268Q5VZI3 342 aa15.17■□□□□ 0.02
CLN3-225ENST00000566824 TMEM68Q96MH6 324 aa15.17■□□□□ 0.02
CLN3-225ENST00000566824 TMEM56Q96MV1 263 aa15.17■□□□□ 0.02
CLN3-225ENST00000566824 QTRT1Q9BXR0 403 aaKnown RBP15.17■□□□□ 0.02
CLN3-225ENST00000566824 COMMD5Q9GZQ3 224 aa15.17■□□□□ 0.02
CLN3-225ENST00000566824 TMEM14BQ9NUH8 114 aa15.17■□□□□ 0.02
CLN3-225ENST00000566824 TMEM56-RWDD3S4R434 201 aa15.17■□□□□ 0.02
CLN3-225ENST00000566824 FBN3Q75N90 2809 aa15.16■□□□□ 0.02
CLN3-225ENST00000566824 CENPXA8MT69 81 aa15.16■□□□□ 0.02
CLN3-225ENST00000566824 B3GALNT1O75752 331 aa15.16■□□□□ 0.02
CLN3-225ENST00000566824 SNAPC5O75971 98 aa15.16■□□□□ 0.02
CLN3-225ENST00000566824 FGF2P09038 288 aa15.16■□□□□ 0.02
CLN3-225ENST00000566824 AKR1C2P52895 323 aa15.16■□□□□ 0.02
CLN3-225ENST00000566824 PPP1R1AQ13522 171 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms