RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 K7EMT4 169 aa12.16□□□□□ -0.46
CDH3-205ENST00000566808 CDK1P06493 297 aa12.16□□□□□ -0.46
CDH3-205ENST00000566808 FCGR3AP08637 254 aa12.16□□□□□ -0.46
CDH3-205ENST00000566808 TMEM50BP56557 158 aa12.16□□□□□ -0.46
CDH3-205ENST00000566808 MRPS15P82914 257 aaKnown RBP12.16□□□□□ -0.46
CDH3-205ENST00000566808 SSX1Q16384 188 aa12.16□□□□□ -0.46
CDH3-205ENST00000566808 OR2B11Q5JQS5 317 aa12.16□□□□□ -0.46
CDH3-205ENST00000566808 RBM48Q5RL73 367 aaKnown RBP12.16□□□□□ -0.46
CDH3-205ENST00000566808 SPSB3Q6PJ21 355 aa12.16□□□□□ -0.46
CDH3-205ENST00000566808 C20orf24Q9BUV8 137 aa12.16□□□□□ -0.46
CDH3-205ENST00000566808 IGLV2-18A0A075B6J9 118 aa12.15□□□□□ -0.46
CDH3-205ENST00000566808 OR2T8A6NH00 312 aa12.15□□□□□ -0.46
CDH3-205ENST00000566808 C15orf62A8K5M9 175 aa12.15□□□□□ -0.46
CDH3-205ENST00000566808 IFNA10P01566 189 aa12.15□□□□□ -0.46
CDH3-205ENST00000566808 CD74P04233 296 aa12.15□□□□□ -0.46
CDH3-205ENST00000566808 CD36P16671 472 aa12.15□□□□□ -0.46
CDH3-205ENST00000566808 TFPI2P48307 235 aa12.15□□□□□ -0.46
CDH3-205ENST00000566808 RPL8P62917 257 aaKnown RBP12.15□□□□□ -0.46
CDH3-205ENST00000566808 LIPKQ5VXJ0 399 aa12.15□□□□□ -0.46
CDH3-205ENST00000566808 Q6ZRM9 215 aa12.15□□□□□ -0.46
CDH3-205ENST00000566808 VN1R17PQ8TDU5 208 aa12.15□□□□□ -0.46
CDH3-205ENST00000566808 RNF2Q99496 336 aa12.15□□□□□ -0.46
CDH3-205ENST00000566808 NACAE9PAV3 2078 aa12.14□□□□□ -0.47
CDH3-205ENST00000566808 ZNF207O43670 478 aaKnown RBP12.14□□□□□ -0.47
CDH3-205ENST00000566808 HLA-GP17693 338 aa12.14□□□□□ -0.47
CDH3-205ENST00000566808 TMEM41BQ5BJD5 291 aa12.14□□□□□ -0.47
CDH3-205ENST00000566808 C1orf134Q5TEV5 83 aa12.14□□□□□ -0.47
CDH3-205ENST00000566808 UBE2DNLQ8IWF7 75 aa12.14□□□□□ -0.47
CDH3-205ENST00000566808 H1FOOQ8IZA3 346 aaPredicted RBP12.14□□□□□ -0.47
CDH3-205ENST00000566808 TMEM80Q96HE8 168 aa12.14□□□□□ -0.47
CDH3-205ENST00000566808 SCRT2Q9NQ03 307 aa12.14□□□□□ -0.47
CDH3-205ENST00000566808 SMPXQ9UHP9 88 aa12.14□□□□□ -0.47
CDH3-205ENST00000566808 IGHV3OR16-8A0A075B7F1 116 aa12.13□□□□□ -0.47
CDH3-205ENST00000566808 ELOA3CA0A087WX78 387 aaPredicted RBP12.13□□□□□ -0.47
CDH3-205ENST00000566808 IGLC7A0M8Q6 106 aa12.13□□□□□ -0.47
CDH3-205ENST00000566808 CGB1A6NKQ9 187 aa12.13□□□□□ -0.47
CDH3-205ENST00000566808 ZNF705EA8MWA4 302 aaPredicted RBP12.13□□□□□ -0.47
CDH3-205ENST00000566808 CYB5BO43169 146 aa12.13□□□□□ -0.47
CDH3-205ENST00000566808 ATP8B1O43520 1251 aa12.13□□□□□ -0.47
CDH3-205ENST00000566808 CD37P11049 281 aa12.13□□□□□ -0.47
CDH3-205ENST00000566808 CRHBPP24387 322 aa12.13□□□□□ -0.47
CDH3-205ENST00000566808 INSL4Q14641 139 aa12.13□□□□□ -0.47
CDH3-205ENST00000566808 PLAC9Q5JTB6 97 aa12.13□□□□□ -0.47
CDH3-205ENST00000566808 OR56B1Q8NGI3 324 aa12.13□□□□□ -0.47
CDH3-205ENST00000566808 PYDC1Q8WXC3 89 aa12.13□□□□□ -0.47
CDH3-205ENST00000566808 CMTM3Q96MX0 182 aa12.13□□□□□ -0.47
CDH3-205ENST00000566808 ATP6V0BQ99437 205 aa12.13□□□□□ -0.47
CDH3-205ENST00000566808 CHRDL1Q9BU40 450 aa12.13□□□□□ -0.47
CDH3-205ENST00000566808 CENPOQ9BU64 300 aa12.13□□□□□ -0.47
CDH3-205ENST00000566808 AGRNO00468 2067 aa12.12□□□□□ -0.47
CDH3-205ENST00000566808 IFNA21P01568 189 aa12.12□□□□□ -0.47
CDH3-205ENST00000566808 IFNA17P01571 189 aa12.12□□□□□ -0.47
CDH3-205ENST00000566808 RPL30P62888 115 aaKnown RBP12.12□□□□□ -0.47
CDH3-205ENST00000566808 P2RY14Q15391 338 aa12.12□□□□□ -0.47
CDH3-205ENST00000566808 ACSM3Q53FZ2 586 aa12.12□□□□□ -0.47
CDH3-205ENST00000566808 SRSF8Q9BRL6 282 aaKnown RBP12.12□□□□□ -0.47
CDH3-205ENST00000566808 SMPD3Q9NY59 655 aaPredicted RBP12.12□□□□□ -0.47
CDH3-205ENST00000566808 CELA1Q9UNI1 258 aa12.12□□□□□ -0.47
CDH3-205ENST00000566808 RBMX2Q9Y388 322 aaKnown RBP12.12□□□□□ -0.47
CDH3-205ENST00000566808 IGKV3-7A0A075B6H7 116 aa12.11□□□□□ -0.47
CDH3-205ENST00000566808 IGHV7-4-1A0A0J9YVY3 117 aa12.11□□□□□ -0.47
CDH3-205ENST00000566808 EFCAB10A6NFE3 127 aa12.11□□□□□ -0.47
CDH3-205ENST00000566808 CHEK1O14757 476 aa12.11□□□□□ -0.47
CDH3-205ENST00000566808 MAFIPQ8WZ33 124 aa12.11□□□□□ -0.47
CDH3-205ENST00000566808 RHPN1-AS1Q9BWJ2 59 aa12.11□□□□□ -0.47
CDH3-205ENST00000566808 PLGRKTQ9HBL7 147 aa12.11□□□□□ -0.47
CDH3-205ENST00000566808 X6R8D5 127 aa12.11□□□□□ -0.47
CDH3-205ENST00000566808 SLC17A2O00624 439 aa12.1□□□□□ -0.47
CDH3-205ENST00000566808 DFFBO76075 338 aa12.1□□□□□ -0.47
CDH3-205ENST00000566808 SLC22A5O76082 557 aa12.1□□□□□ -0.47
CDH3-205ENST00000566808 HRASP01112 189 aa12.1□□□□□ -0.47
CDH3-205ENST00000566808 WNT4P56705 351 aa12.1□□□□□ -0.47
CDH3-205ENST00000566808 OR2B8PP59922 312 aa12.1□□□□□ -0.47
CDH3-205ENST00000566808 PAFAH1B2P68402 229 aa12.1□□□□□ -0.47
CDH3-205ENST00000566808 C12orf74Q32Q52 190 aa12.1□□□□□ -0.47
CDH3-205ENST00000566808 HSD17B12Q53GQ0 312 aa12.1□□□□□ -0.47
CDH3-205ENST00000566808 STHQ8IWL8 128 aa12.1□□□□□ -0.47
CDH3-205ENST00000566808 MS4A15Q8N5U1 240 aa12.1□□□□□ -0.47
CDH3-205ENST00000566808 GDPD1Q8N9F7 314 aa12.1□□□□□ -0.47
CDH3-205ENST00000566808 TMEM116Q8NCL8 245 aa12.1□□□□□ -0.47
CDH3-205ENST00000566808 TCTEX1D2Q8WW35 142 aa12.1□□□□□ -0.47
CDH3-205ENST00000566808 HSD17B10Q99714 261 aaKnown RBP12.1□□□□□ -0.47
CDH3-205ENST00000566808 BET1LQ9NYM9 111 aa12.1□□□□□ -0.47
CDH3-205ENST00000566808 KCNK7Q9Y2U2 307 aa12.1□□□□□ -0.47
CDH3-205ENST00000566808 ERICH4A6NGS2 130 aa12.09□□□□□ -0.47
CDH3-205ENST00000566808 MYL12BO14950 172 aa12.09□□□□□ -0.47
CDH3-205ENST00000566808 GIG44P09565 113 aaPredicted RBP12.09□□□□□ -0.47
CDH3-205ENST00000566808 SPP1P10451 314 aa12.09□□□□□ -0.47
CDH3-205ENST00000566808 TIMM50Q3ZCQ8 353 aa12.09□□□□□ -0.47
CDH3-205ENST00000566808 FAM90A2PQ658T7 463 aa12.09□□□□□ -0.47
CDH3-205ENST00000566808 LEMD1Q68G75 181 aa12.09□□□□□ -0.47
CDH3-205ENST00000566808 GBGT1Q8N5D6 347 aa12.09□□□□□ -0.47
CDH3-205ENST00000566808 C9orf16Q9BUW7 83 aa12.09□□□□□ -0.47
CDH3-205ENST00000566808 C21orf62Q9NYP8 219 aa12.09□□□□□ -0.47
CDH3-205ENST00000566808 RAB27BO00194 218 aa12.08□□□□□ -0.48
CDH3-205ENST00000566808 CD5P06127 495 aa12.08□□□□□ -0.48
CDH3-205ENST00000566808 DEFB131AP59861 70 aa12.08□□□□□ -0.48
CDH3-205ENST00000566808 ST3GAL4Q11206 333 aa12.08□□□□□ -0.48
CDH3-205ENST00000566808 RAB11BQ15907 218 aa12.08□□□□□ -0.48
CDH3-205ENST00000566808 MORN3Q6PF18 240 aaPredicted RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms