RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 NEURL2Q9BR09 285 aa10.24□□□□□ -0.77
CLK3-214ENST00000564096 QTRT1Q9BXR0 403 aaKnown RBP10.24□□□□□ -0.77
CLK3-214ENST00000564096 PRDM13Q9H4Q3 707 aa10.24□□□□□ -0.77
CLK3-214ENST00000564096 ZNF430Q9H8G1 570 aaPredicted RBP10.24□□□□□ -0.77
CLK3-214ENST00000564096 PLEKHA3Q9HB20 300 aa10.24□□□□□ -0.77
CLK3-214ENST00000564096 ABCA1O95477 2261 aa10.24□□□□□ -0.77
CLK3-214ENST00000564096 A0A1W2PN81 502 aa10.23□□□□□ -0.77
CLK3-214ENST00000564096 A6NDX4 124 aa10.23□□□□□ -0.77
CLK3-214ENST00000564096 K7EPK0 472 aa10.23□□□□□ -0.77
CLK3-214ENST00000564096 SYNGR2O43760 224 aa10.23□□□□□ -0.77
CLK3-214ENST00000564096 GPR137BO60478 399 aa10.23□□□□□ -0.77
CLK3-214ENST00000564096 NXPH3O95157 252 aa10.23□□□□□ -0.77
CLK3-214ENST00000564096 MPC2O95563 127 aa10.23□□□□□ -0.77
CLK3-214ENST00000564096 CA2P00918 260 aa10.23□□□□□ -0.77
CLK3-214ENST00000564096 IGHV4-59P01825 116 aa10.23□□□□□ -0.77
CLK3-214ENST00000564096 HLA-DRB1P01911 266 aa10.23□□□□□ -0.77
CLK3-214ENST00000564096 MBPP02686 304 aaPredicted RBP10.23□□□□□ -0.77
CLK3-214ENST00000564096 CRYGBP07316 175 aa10.23□□□□□ -0.77
CLK3-214ENST00000564096 IL6RP08887 468 aaPredicted RBP10.23□□□□□ -0.77
CLK3-214ENST00000564096 CHRNA7P36544 502 aa10.23□□□□□ -0.77
CLK3-214ENST00000564096 F2RL1P55085 397 aa10.23□□□□□ -0.77
CLK3-214ENST00000564096 HSPE1P61604 102 aaKnown RBP10.23□□□□□ -0.77
CLK3-214ENST00000564096 GNB1P62873 340 aa10.23□□□□□ -0.77
CLK3-214ENST00000564096 LY6EQ16553 131 aa10.23□□□□□ -0.77
CLK3-214ENST00000564096 PDLIM3Q53GG5 364 aaPredicted RBP10.23□□□□□ -0.77
CLK3-214ENST00000564096 PRSS54Q6PEW0 395 aa10.23□□□□□ -0.77
CLK3-214ENST00000564096 HSD17B13Q7Z5P4 300 aaPredicted RBP10.23□□□□□ -0.77
CLK3-214ENST00000564096 TMEM219Q86XT9 240 aa10.23□□□□□ -0.77
CLK3-214ENST00000564096 FAM71E2Q8N5Q1 922 aa10.23□□□□□ -0.77
CLK3-214ENST00000564096 SIGLECL1Q8N7X8 197 aa10.23□□□□□ -0.77
CLK3-214ENST00000564096 OR1L8Q8NGR8 309 aa10.23□□□□□ -0.77
CLK3-214ENST00000564096 RITA1Q96K30 269 aa10.23□□□□□ -0.77
CLK3-214ENST00000564096 RAB40CQ96S21 281 aa10.23□□□□□ -0.77
CLK3-214ENST00000564096 TPSG1Q9NRR2 321 aa10.23□□□□□ -0.77
CLK3-214ENST00000564096 SOX21Q9Y651 276 aaPredicted RBP10.23□□□□□ -0.77
CLK3-214ENST00000564096 FXYD6-FXYD2A0A087WZ82 144 aa10.22□□□□□ -0.77
CLK3-214ENST00000564096 TRAV3A0A0B4J244 114 aa10.22□□□□□ -0.77
CLK3-214ENST00000564096 E5RGE8 158 aa10.22□□□□□ -0.77
CLK3-214ENST00000564096 DEDDO75618 318 aa10.22□□□□□ -0.77
CLK3-214ENST00000564096 CNIH1O95406 144 aa10.22□□□□□ -0.77
CLK3-214ENST00000564096 C1QBP02746 253 aa10.22□□□□□ -0.77
CLK3-214ENST00000564096 NUP62P37198 522 aaPredicted RBP10.22□□□□□ -0.77
CLK3-214ENST00000564096 RPL27AP46776 148 aaKnown RBP10.22□□□□□ -0.77
CLK3-214ENST00000564096 COMPP49747 757 aaPredicted RBP10.22□□□□□ -0.77
CLK3-214ENST00000564096 RPP30P78346 268 aaKnown RBP10.22□□□□□ -0.77
CLK3-214ENST00000564096 PRCDQ00LT1 54 aa10.22□□□□□ -0.77
CLK3-214ENST00000564096 ID3Q02535 119 aa10.22□□□□□ -0.77
CLK3-214ENST00000564096 IL15RAQ13261 267 aa10.22□□□□□ -0.77
CLK3-214ENST00000564096 CXorf66Q5JRM2 361 aaPredicted RBP10.22□□□□□ -0.77
CLK3-214ENST00000564096 C11orf87Q6NUJ2 197 aa10.22□□□□□ -0.77
CLK3-214ENST00000564096 C5orf56Q8N8D9 126 aa10.22□□□□□ -0.77
CLK3-214ENST00000564096 Q8N9W7 124 aa10.22□□□□□ -0.77
CLK3-214ENST00000564096 PIFOQ8TCI5 191 aa10.22□□□□□ -0.77
CLK3-214ENST00000564096 DTD1Q8TEA8 209 aa10.22□□□□□ -0.77
CLK3-214ENST00000564096 ZNF418Q8TF45 676 aaPredicted RBP10.22□□□□□ -0.77
CLK3-214ENST00000564096 DCUN1D4Q92564 292 aa10.22□□□□□ -0.77
CLK3-214ENST00000564096 RBMXL1Q96E39 390 aaKnown RBP10.22□□□□□ -0.77
CLK3-214ENST00000564096 HINT2Q9BX68 163 aa10.22□□□□□ -0.77
CLK3-214ENST00000564096 HIPK2Q9H2X6 1198 aa10.22□□□□□ -0.77
CLK3-214ENST00000564096 MBD2Q9UBB5 411 aa10.22□□□□□ -0.77
CLK3-214ENST00000564096 RCL1Q9Y2P8 373 aaKnown RBP10.22□□□□□ -0.77
CLK3-214ENST00000564096 HOXA3O43365 443 aaPredicted RBP10.21□□□□□ -0.77
CLK3-214ENST00000564096 SCAF4O95104 1147 aaKnown RBP10.21□□□□□ -0.77
CLK3-214ENST00000564096 HNRNPCP07910 306 aaKnown RBP eCLIP10.21□□□□□ -0.77
CLK3-214ENST00000564096 POLR2GP62487 172 aaKnown RBP eCLIP10.21□□□□□ -0.77
CLK3-214ENST00000564096 RPL23AP62750 156 aaKnown RBP10.21□□□□□ -0.77
CLK3-214ENST00000564096 ABHD5Q8WTS1 349 aa10.21□□□□□ -0.77
CLK3-214ENST00000564096 SRSF12Q8WXF0 261 aaKnown RBP10.21□□□□□ -0.77
CLK3-214ENST00000564096 ARPC1AQ92747 370 aa10.21□□□□□ -0.77
CLK3-214ENST00000564096 HYLS1Q96M11 299 aa10.21□□□□□ -0.77
CLK3-214ENST00000564096 ZNF48Q96MX3 618 aaPredicted RBP10.21□□□□□ -0.77
CLK3-214ENST00000564096 JMJD8Q96S16 334 aa10.21□□□□□ -0.77
CLK3-214ENST00000564096 SRSF8Q9BRL6 282 aaKnown RBP10.21□□□□□ -0.77
CLK3-214ENST00000564096 MAGT1Q9H0U3 335 aa10.21□□□□□ -0.77
CLK3-214ENST00000564096 RBKSQ9H477 322 aa10.21□□□□□ -0.77
CLK3-214ENST00000564096 PLSCR3Q9NRY6 295 aa10.21□□□□□ -0.77
CLK3-214ENST00000564096 WSB1Q9Y6I7 421 aa10.21□□□□□ -0.77
CLK3-214ENST00000564096 OTOGQ6ZRI0 2925 aa10.21□□□□□ -0.78
CLK3-214ENST00000564096 TRAV14DV4A0A0A6YYC5 116 aa10.2□□□□□ -0.78
CLK3-214ENST00000564096 SMLR1H3BR10 107 aa10.2□□□□□ -0.78
CLK3-214ENST00000564096 KCNAB3O43448 404 aa10.2□□□□□ -0.78
CLK3-214ENST00000564096 SLC25A4P12235 298 aa10.2□□□□□ -0.78
CLK3-214ENST00000564096 CAV2P51636 162 aa10.2□□□□□ -0.78
CLK3-214ENST00000564096 RIPPLY3P57055 190 aa10.2□□□□□ -0.78
CLK3-214ENST00000564096 TAS2R30P59541 319 aa10.2□□□□□ -0.78
CLK3-214ENST00000564096 FXYD3Q14802 87 aa10.2□□□□□ -0.78
CLK3-214ENST00000564096 FBLN7Q53RD9 439 aa10.2□□□□□ -0.78
CLK3-214ENST00000564096 INO80EQ8NBZ0 244 aaPredicted RBP10.2□□□□□ -0.78
CLK3-214ENST00000564096 GRPEL2Q8TAA5 225 aa10.2□□□□□ -0.78
CLK3-214ENST00000564096 WDR89Q96FK6 387 aaPredicted RBP10.2□□□□□ -0.78
CLK3-214ENST00000564096 NPFFR1Q9GZQ6 430 aa10.2□□□□□ -0.78
CLK3-214ENST00000564096 TEX50A0A1B0GTY4 177 aa10.19□□□□□ -0.78
CLK3-214ENST00000564096 INAFM1C9JVW0 142 aa10.19□□□□□ -0.78
CLK3-214ENST00000564096 TSC22D2O75157 780 aa10.19□□□□□ -0.78
CLK3-214ENST00000564096 OPN1MWP04001 364 aa10.19□□□□□ -0.78
CLK3-214ENST00000564096 OPN1MW2P0DN77 364 aa10.19□□□□□ -0.78
CLK3-214ENST00000564096 OPN1MW3P0DN78 364 aa10.19□□□□□ -0.78
CLK3-214ENST00000564096 IAPPP10997 89 aa10.19□□□□□ -0.78
CLK3-214ENST00000564096 P2RY1P47900 373 aa10.19□□□□□ -0.78
CLK3-214ENST00000564096 ERHP84090 104 aaKnown RBP10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms