RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 C1orf194Q5T5A4 169 aa10.93□□□□□ -0.66
CLN3-210ENST00000563874 TMEM164Q5U3C3 297 aa10.93□□□□□ -0.66
CLN3-210ENST00000563874 LRRC29Q8WV35 223 aa10.93□□□□□ -0.66
CLN3-210ENST00000563874 TRIB1Q96RU8 372 aa10.93□□□□□ -0.66
CLN3-210ENST00000563874 RP1L1Q8IWN7 2480 aaPredicted RBP10.93□□□□□ -0.66
CLN3-210ENST00000563874 HEATR1Q9H583 2144 aaKnown RBP10.93□□□□□ -0.66
CLN3-210ENST00000563874 IGHV3OR15-7A0A075B7D8 119 aa10.93□□□□□ -0.66
CLN3-210ENST00000563874 CXorf1O96002 111 aa10.93□□□□□ -0.66
CLN3-210ENST00000563874 TRIP6Q15654 476 aaKnown RBP10.93□□□□□ -0.66
CLN3-210ENST00000563874 SMIM21Q3B7S5 101 aa10.93□□□□□ -0.66
CLN3-210ENST00000563874 TET2Q6N021 2002 aaPredicted RBP10.93□□□□□ -0.66
CLN3-210ENST00000563874 Q6ZWC4 215 aa10.93□□□□□ -0.66
CLN3-210ENST00000563874 TCTEX1D1Q8N7M0 179 aa10.93□□□□□ -0.66
CLN3-210ENST00000563874 C1orf159Q96HA4 380 aa10.93□□□□□ -0.66
CLN3-210ENST00000563874 GMPPAQ96IJ6 420 aaPredicted RBP10.93□□□□□ -0.66
CLN3-210ENST00000563874 ACTL6BO94805 426 aa10.92□□□□□ -0.66
CLN3-210ENST00000563874 HPRT1P00492 218 aa10.92□□□□□ -0.66
CLN3-210ENST00000563874 MYOD1P15172 320 aa10.92□□□□□ -0.66
CLN3-210ENST00000563874 LINC00310P59036 64 aa10.92□□□□□ -0.66
CLN3-210ENST00000563874 OR5I1Q13606 314 aa10.92□□□□□ -0.66
CLN3-210ENST00000563874 HINT2Q9BX68 163 aa10.92□□□□□ -0.66
CLN3-210ENST00000563874 ARRDC1-AS1Q9H2J1 176 aa10.92□□□□□ -0.66
CLN3-210ENST00000563874 DUSP13Q9UII6 198 aa10.92□□□□□ -0.66
CLN3-210ENST00000563874 M0R143 59 aa10.92□□□□□ -0.66
CLN3-210ENST00000563874 SERF1AO75920 110 aa10.92□□□□□ -0.66
CLN3-210ENST00000563874 OR10J1P30954 320 aa10.92□□□□□ -0.66
CLN3-210ENST00000563874 PRDX2P32119 198 aa10.92□□□□□ -0.66
CLN3-210ENST00000563874 VDAC2P45880 294 aaPredicted RBP10.92□□□□□ -0.66
CLN3-210ENST00000563874 C1orf229Q6ZS94 237 aaPredicted RBP10.92□□□□□ -0.66
CLN3-210ENST00000563874 C1orf210Q8IVY1 113 aa10.92□□□□□ -0.66
CLN3-210ENST00000563874 ZCCHC14Q8WYQ9 949 aaKnown RBP10.92□□□□□ -0.66
CLN3-210ENST00000563874 TMEM140Q9NV12 185 aa10.92□□□□□ -0.66
CLN3-210ENST00000563874 MAP1BP46821 2468 aaKnown RBP10.91□□□□□ -0.66
CLN3-210ENST00000563874 C21orf140B9A014 251 aa10.91□□□□□ -0.66
CLN3-210ENST00000563874 PRSS46E5RG02 174 aa10.91□□□□□ -0.66
CLN3-210ENST00000563874 IL6RP08887 468 aaPredicted RBP10.91□□□□□ -0.66
CLN3-210ENST00000563874 GCHFRP30047 84 aa10.91□□□□□ -0.66
CLN3-210ENST00000563874 CDKN1AP38936 164 aa10.91□□□□□ -0.66
CLN3-210ENST00000563874 IER3P46695 156 aa10.91□□□□□ -0.66
CLN3-210ENST00000563874 ERVK-16P61578 105 aa10.91□□□□□ -0.66
CLN3-210ENST00000563874 RELBQ01201 579 aa10.91□□□□□ -0.66
CLN3-210ENST00000563874 EFNB3Q15768 340 aa10.91□□□□□ -0.66
CLN3-210ENST00000563874 MORN2Q502X0 79 aa10.91□□□□□ -0.66
CLN3-210ENST00000563874 ARSJQ5FYB0 599 aaPredicted RBP10.91□□□□□ -0.66
CLN3-210ENST00000563874 ZNRF1Q8ND25 227 aa10.91□□□□□ -0.66
CLN3-210ENST00000563874 HSPB9Q9BQS6 159 aa10.91□□□□□ -0.66
CLN3-210ENST00000563874 MRPL18Q9H0U6 180 aaKnown RBP10.91□□□□□ -0.66
CLN3-210ENST00000563874 COL27A1Q8IZC6 1860 aaPredicted RBP10.91□□□□□ -0.66
CLN3-210ENST00000563874 CRISP2P16562 243 aa10.91□□□□□ -0.66
CLN3-210ENST00000563874 KRTCAP3Q53RY4 240 aa10.91□□□□□ -0.66
CLN3-210ENST00000563874 VWA1Q6PCB0 445 aa10.91□□□□□ -0.66
CLN3-210ENST00000563874 STPG3Q8N7X2 389 aa10.91□□□□□ -0.66
CLN3-210ENST00000563874 OR4P4Q8NGL7 312 aa10.91□□□□□ -0.66
CLN3-210ENST00000563874 PRR7Q8TB68 274 aa10.91□□□□□ -0.66
CLN3-210ENST00000563874 TCF19Q9Y242 345 aa10.91□□□□□ -0.66
CLN3-210ENST00000563874 PAM16Q9Y3D7 125 aa10.91□□□□□ -0.66
CLN3-210ENST00000563874 TNCP24821 2201 aa10.91□□□□□ -0.66
CLN3-210ENST00000563874 PTPRBP23467 1997 aa10.91□□□□□ -0.66
CLN3-210ENST00000563874 KIR2DL5BA0A0G2JN68 375 aa10.9□□□□□ -0.66
CLN3-210ENST00000563874 KIR2DL5BA0A0G2JPC4 375 aa10.9□□□□□ -0.66
CLN3-210ENST00000563874 FCN1O00602 326 aa10.9□□□□□ -0.66
CLN3-210ENST00000563874 MPDU1O75352 247 aa10.9□□□□□ -0.66
CLN3-210ENST00000563874 ADH4P08319 380 aa10.9□□□□□ -0.66
CLN3-210ENST00000563874 YPEL3P61236 119 aaPredicted RBP10.9□□□□□ -0.66
CLN3-210ENST00000563874 SLC35B1P78383 322 aa10.9□□□□□ -0.66
CLN3-210ENST00000563874 ZNF718Q3SXZ3 478 aa10.9□□□□□ -0.66
CLN3-210ENST00000563874 INO80CQ6PI98 192 aaPredicted RBP10.9□□□□□ -0.66
CLN3-210ENST00000563874 KIR2DL5AQ8N109 375 aa10.9□□□□□ -0.66
CLN3-210ENST00000563874 OR2Z1Q8NG97 314 aa10.9□□□□□ -0.66
CLN3-210ENST00000563874 TMEM106BQ9NUM4 274 aa10.9□□□□□ -0.66
CLN3-210ENST00000563874 TNFSF15O95150 251 aa10.9□□□□□ -0.66
CLN3-210ENST00000563874 CGAP01215 116 aa10.9□□□□□ -0.66
CLN3-210ENST00000563874 CECR9P0C854 216 aa10.9□□□□□ -0.66
CLN3-210ENST00000563874 WDR31Q8NA23 367 aa10.9□□□□□ -0.66
CLN3-210ENST00000563874 OR1L6Q8NGR2 347 aa10.9□□□□□ -0.66
CLN3-210ENST00000563874 S1PR3Q99500 378 aa10.9□□□□□ -0.66
CLN3-210ENST00000563874 SMG1Q96Q15 3661 aaKnown RBP10.9□□□□□ -0.66
CLN3-210ENST00000563874 TECTAO75443 2155 aa10.9□□□□□ -0.66
CLN3-210ENST00000563874 IGKV1D-17A0A075B6S4 117 aa10.9□□□□□ -0.67
CLN3-210ENST00000563874 A6NNC1 897 aa10.9□□□□□ -0.67
CLN3-210ENST00000563874 AHRRA9YTQ3 701 aa10.9□□□□□ -0.67
CLN3-210ENST00000563874 TDGF1P3P51864 188 aa10.9□□□□□ -0.67
CLN3-210ENST00000563874 HTD2P86397 168 aa10.9□□□□□ -0.67
CLN3-210ENST00000563874 TMEM249Q2WGJ8 235 aa10.9□□□□□ -0.67
CLN3-210ENST00000563874 WDR73Q6P4I2 378 aa10.9□□□□□ -0.67
CLN3-210ENST00000563874 FAM214BQ7L5A3 538 aa10.9□□□□□ -0.67
CLN3-210ENST00000563874 BAGE3Q86Y29 109 aa10.9□□□□□ -0.67
CLN3-210ENST00000563874 BAGE2Q86Y30 109 aa10.9□□□□□ -0.67
CLN3-210ENST00000563874 VN1R17PQ8TDU5 208 aa10.9□□□□□ -0.67
CLN3-210ENST00000563874 BTF3L4Q96K17 158 aa10.9□□□□□ -0.67
CLN3-210ENST00000563874 PARD6AQ9NPB6 346 aa10.9□□□□□ -0.67
CLN3-210ENST00000563874 GOSR1O95249 250 aa10.89□□□□□ -0.67
CLN3-210ENST00000563874 ZNF25P17030 456 aaPredicted RBP10.89□□□□□ -0.67
CLN3-210ENST00000563874 DHRS13Q6UX07 377 aa10.89□□□□□ -0.67
CLN3-210ENST00000563874 Q6ZT83 130 aa10.89□□□□□ -0.67
CLN3-210ENST00000563874 FAM103A1Q9BTL3 118 aaKnown RBP10.89□□□□□ -0.67
CLN3-210ENST00000563874 NPVFQ9HCQ7 196 aa10.89□□□□□ -0.67
CLN3-210ENST00000563874 IL36BQ9NZH7 164 aa10.89□□□□□ -0.67
CLN3-210ENST00000563874 GOLT1BQ9Y3E0 138 aa10.89□□□□□ -0.67
CLN3-210ENST00000563874 LNP1A1A4G5 178 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms