RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 OR4A16Q8NH70 328 aa13.12□□□□□ -0.31
VPS4A-202ENST00000562754 NPFFR1Q9GZQ6 430 aa13.12□□□□□ -0.31
VPS4A-202ENST00000562754 MED28Q9H204 178 aa13.12□□□□□ -0.31
VPS4A-202ENST00000562754 COA4Q9NYJ1 87 aa13.12□□□□□ -0.31
VPS4A-202ENST00000562754 PRNDQ9UKY0 176 aa13.12□□□□□ -0.31
VPS4A-202ENST00000562754 C2CD3Q4AC94 2353 aa13.12□□□□□ -0.31
VPS4A-202ENST00000562754 hCG_2014768A0A024R1R8 64 aa13.11□□□□□ -0.31
VPS4A-202ENST00000562754 CGB1A6NKQ9 187 aa13.11□□□□□ -0.31
VPS4A-202ENST00000562754 LINC01548A6NM66 108 aa13.11□□□□□ -0.31
VPS4A-202ENST00000562754 FAM25EA8MYX2 175 aa13.11□□□□□ -0.31
VPS4A-202ENST00000562754 ST8SIA3O43173 380 aa13.11□□□□□ -0.31
VPS4A-202ENST00000562754 CXCL3P19876 107 aa13.11□□□□□ -0.31
VPS4A-202ENST00000562754 MAS1LP35410 378 aa13.11□□□□□ -0.31
VPS4A-202ENST00000562754 COMPP49747 757 aaPredicted RBP13.11□□□□□ -0.31
VPS4A-202ENST00000562754 IAH1Q2TAA2 248 aaPredicted RBP13.11□□□□□ -0.31
VPS4A-202ENST00000562754 C9orf152Q5JTZ5 239 aa13.11□□□□□ -0.31
VPS4A-202ENST00000562754 THOC7Q6I9Y2 204 aaKnown RBP13.11□□□□□ -0.31
VPS4A-202ENST00000562754 ZBTB8BQ8NAP8 495 aaPredicted RBP13.11□□□□□ -0.31
VPS4A-202ENST00000562754 SPIN2AQ99865 258 aa13.11□□□□□ -0.31
VPS4A-202ENST00000562754 SPIN2BQ9BPZ2 258 aa13.11□□□□□ -0.31
VPS4A-202ENST00000562754 FBXO7Q9Y3I1 522 aa13.11□□□□□ -0.31
VPS4A-202ENST00000562754 OR51B2Q9Y5P1 312 aa13.11□□□□□ -0.31
VPS4A-202ENST00000562754 CUBNO60494 3623 aa13.11□□□□□ -0.31
VPS4A-202ENST00000562754 C13orf42A0A1B0GVH6 325 aa13.1□□□□□ -0.31
VPS4A-202ENST00000562754 C5orf51A6NDU8 294 aa13.1□□□□□ -0.31
VPS4A-202ENST00000562754 E7EUB6 86 aa13.1□□□□□ -0.31
VPS4A-202ENST00000562754 TRIM77I1YAP6 450 aa13.1□□□□□ -0.31
VPS4A-202ENST00000562754 RBMXL2O75526 392 aaKnown RBP13.1□□□□□ -0.31
VPS4A-202ENST00000562754 NXPH3O95157 252 aa13.1□□□□□ -0.31
VPS4A-202ENST00000562754 IGHG2P01859 326 aa13.1□□□□□ -0.31
VPS4A-202ENST00000562754 OPN1MWP04001 364 aa13.1□□□□□ -0.31
VPS4A-202ENST00000562754 OPN1MW2P0DN77 364 aa13.1□□□□□ -0.31
VPS4A-202ENST00000562754 OPN1MW3P0DN78 364 aa13.1□□□□□ -0.31
VPS4A-202ENST00000562754 H2BFSP57053 126 aa13.1□□□□□ -0.31
VPS4A-202ENST00000562754 FXYD3Q14802 87 aa13.1□□□□□ -0.31
VPS4A-202ENST00000562754 TMEM95Q3KNT9 176 aa13.1□□□□□ -0.31
VPS4A-202ENST00000562754 GSG1LQ6UXU4 331 aa13.1□□□□□ -0.31
VPS4A-202ENST00000562754 ZNF562Q6V9R5 426 aa13.1□□□□□ -0.31
VPS4A-202ENST00000562754 ZNF429Q86V71 674 aa13.1□□□□□ -0.31
VPS4A-202ENST00000562754 OR4D5Q8NGN0 318 aa13.1□□□□□ -0.31
VPS4A-202ENST00000562754 OR1S1Q8NH92 325 aa13.1□□□□□ -0.31
VPS4A-202ENST00000562754 SRSF12Q8WXF0 261 aaKnown RBP13.1□□□□□ -0.31
VPS4A-202ENST00000562754 ARPC1AQ92747 370 aa13.1□□□□□ -0.31
VPS4A-202ENST00000562754 WDR89Q96FK6 387 aaPredicted RBP13.1□□□□□ -0.31
VPS4A-202ENST00000562754 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.1□□□□□ -0.31
VPS4A-202ENST00000562754 TEX50A0A1B0GTY4 177 aa13.09□□□□□ -0.31
VPS4A-202ENST00000562754 ATP6V0E1O15342 81 aa13.09□□□□□ -0.31
VPS4A-202ENST00000562754 EGR2P11161 476 aaPredicted RBP13.09□□□□□ -0.31
VPS4A-202ENST00000562754 RPL27AP46776 148 aaKnown RBP13.09□□□□□ -0.31
VPS4A-202ENST00000562754 RPL15P61313 204 aaKnown RBP13.09□□□□□ -0.31
VPS4A-202ENST00000562754 SPINK9Q5DT21 86 aa13.09□□□□□ -0.31
VPS4A-202ENST00000562754 Q6ZSV7 163 aa13.09□□□□□ -0.31
VPS4A-202ENST00000562754 Q8N2B8 174 aa13.09□□□□□ -0.31
VPS4A-202ENST00000562754 GRPEL2Q8TAA5 225 aa13.09□□□□□ -0.31
VPS4A-202ENST00000562754 C2orf50Q96LR7 162 aa13.09□□□□□ -0.31
VPS4A-202ENST00000562754 FAM103A1Q9BTL3 118 aaKnown RBP13.09□□□□□ -0.31
VPS4A-202ENST00000562754 PRSS22Q9GZN4 317 aa13.09□□□□□ -0.31
VPS4A-202ENST00000562754 COMMD5Q9GZQ3 224 aa13.09□□□□□ -0.31
VPS4A-202ENST00000562754 PARP11Q9NR21 331 aa13.09□□□□□ -0.31
VPS4A-202ENST00000562754 ZNF257Q9Y2Q1 563 aa13.09□□□□□ -0.31
VPS4A-202ENST00000562754 NIPBLQ6KC79 2804 aaeCLIP13.09□□□□□ -0.31
VPS4A-202ENST00000562754 TEX22C9J3V5 150 aa13.08□□□□□ -0.32
VPS4A-202ENST00000562754 ACTL6BO94805 426 aa13.08□□□□□ -0.32
VPS4A-202ENST00000562754 CNIH1O95406 144 aa13.08□□□□□ -0.32
VPS4A-202ENST00000562754 IL15RAQ13261 267 aa13.08□□□□□ -0.32
VPS4A-202ENST00000562754 CXorf66Q5JRM2 361 aaPredicted RBP13.08□□□□□ -0.32
VPS4A-202ENST00000562754 C11orf87Q6NUJ2 197 aa13.08□□□□□ -0.32
VPS4A-202ENST00000562754 SLC35E3Q7Z769 313 aa13.08□□□□□ -0.32
VPS4A-202ENST00000562754 OR1L8Q8NGR8 309 aa13.08□□□□□ -0.32
VPS4A-202ENST00000562754 OR5B3Q8NH48 314 aa13.08□□□□□ -0.32
VPS4A-202ENST00000562754 FKBP11Q9NYL4 201 aa13.08□□□□□ -0.32
VPS4A-202ENST00000562754 HSPB7Q9UBY9 170 aa13.08□□□□□ -0.32
VPS4A-202ENST00000562754 SETD2Q9BYW2 2564 aaPredicted RBP13.08□□□□□ -0.32
VPS4A-202ENST00000562754 KCNAB3O43448 404 aa13.07□□□□□ -0.32
VPS4A-202ENST00000562754 TSPAN9O75954 239 aa13.07□□□□□ -0.32
VPS4A-202ENST00000562754 HSPE1P61604 102 aaKnown RBP13.07□□□□□ -0.32
VPS4A-202ENST00000562754 PRCDQ00LT1 54 aa13.07□□□□□ -0.32
VPS4A-202ENST00000562754 TNFRSF9Q07011 255 aa13.07□□□□□ -0.32
VPS4A-202ENST00000562754 ASPHD1Q5U4P2 390 aa13.07□□□□□ -0.32
VPS4A-202ENST00000562754 PRIMA1Q86XR5 153 aa13.07□□□□□ -0.32
VPS4A-202ENST00000562754 LURAP1LQ8IV03 231 aa13.07□□□□□ -0.32
VPS4A-202ENST00000562754 ABHD5Q8WTS1 349 aa13.07□□□□□ -0.32
VPS4A-202ENST00000562754 FYTTD1Q96QD9 318 aaKnown RBP13.07□□□□□ -0.32
VPS4A-202ENST00000562754 HINT2Q9BX68 163 aa13.07□□□□□ -0.32
VPS4A-202ENST00000562754 NDUFA4L2Q9NRX3 87 aa13.07□□□□□ -0.32
VPS4A-202ENST00000562754 GSKIPQ9P0R6 139 aa13.07□□□□□ -0.32
VPS4A-202ENST00000562754 NF1P21359 2839 aa13.06□□□□□ -0.32
VPS4A-202ENST00000562754 IGLC7A0M8Q6 106 aa13.06□□□□□ -0.32
VPS4A-202ENST00000562754 HMX3A6NHT5 357 aa13.06□□□□□ -0.32
VPS4A-202ENST00000562754 MSGN1A6NI15 193 aa13.06□□□□□ -0.32
VPS4A-202ENST00000562754 IFNA17P01571 189 aa13.06□□□□□ -0.32
VPS4A-202ENST00000562754 CRYBA1P05813 215 aa13.06□□□□□ -0.32
VPS4A-202ENST00000562754 TRAPPC2P0DI81 140 aa13.06□□□□□ -0.32
VPS4A-202ENST00000562754 TRAPPC2BP0DI82 140 aa13.06□□□□□ -0.32
VPS4A-202ENST00000562754 APELAP0DMC3 54 aa13.06□□□□□ -0.32
VPS4A-202ENST00000562754 CRIP2P52943 208 aaPredicted RBP13.06□□□□□ -0.32
VPS4A-202ENST00000562754 SPCS3P61009 180 aa13.06□□□□□ -0.32
VPS4A-202ENST00000562754 SRSF4Q08170 494 aaKnown RBP13.06□□□□□ -0.32
VPS4A-202ENST00000562754 PDLIM3Q53GG5 364 aaPredicted RBP13.06□□□□□ -0.32
VPS4A-202ENST00000562754 C19orf54Q5BKX5 351 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms