RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 KMT2EQ8IZD2 1858 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 RP1L1Q8IWN7 2480 aaPredicted RBP9.45□□□□□ -0.9
CUX1-218ENST00000560541 ICE1Q9Y2F5 2266 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 CTXND1A0A1B0GTU2 59 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 GAGE12BA1L429 117 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 PSG7Q13046 419 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 C1orf122Q6ZSJ8 110 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 NANOS1Q8WY41 292 aaKnown RBP9.45□□□□□ -0.9
CUX1-218ENST00000560541 TMEM147Q9BVK8 224 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 NPCDR1Q9BY65 106 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 STRADBQ9C0K7 418 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 GTSF1LQ9H1H1 148 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 SMG1Q96Q15 3661 aaKnown RBP9.44□□□□□ -0.9
CUX1-218ENST00000560541 RNF212BA8MTL3 300 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 YPEL1O60688 119 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 IGHV3-13P01766 116 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 IGHV3-7P01780 117 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 MPV17P39210 176 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 RBPJQ06330 500 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 ZNF146Q15072 292 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 MSMO1Q15800 293 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 ACOT6Q3I5F7 207 aaPredicted RBP9.44□□□□□ -0.9
CUX1-218ENST00000560541 NINJ1Q92982 152 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 YPEL2Q96QA6 119 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 DCTN5Q9BTE1 182 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 WNT10AQ9GZT5 417 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 FAM234AQ9H0X4 552 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 METRNQ9UJH8 293 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 SLC45A2Q9UMX9 530 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 TRAV38-1A0A0B4J264 116 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 PGPEP1LA6NFU8 196 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 GYPAP02724 150 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 WNT2P09544 360 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 ACP1P24666 158 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 APOBEC3AP31941 199 aaPredicted RBP9.44□□□□□ -0.9
CUX1-218ENST00000560541 RNFT1Q5M7Z0 435 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 PRAMEF6Q5VXH4 476 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 Q8IYB0 196 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 FAM216AQ8WUB2 273 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 ZNF48Q96MX3 618 aaPredicted RBP9.44□□□□□ -0.9
CUX1-218ENST00000560541 TMEM204Q9BSN7 226 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.44□□□□□ -0.9
CUX1-218ENST00000560541 SLC35D1Q9NTN3 355 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 SPRR3Q9UBC9 169 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 TP73-AS1Q9UF72 201 aa9.44□□□□□ -0.9
CUX1-218ENST00000560541 TMEM30CPA0ZSE6 113 aa9.43□□□□□ -0.9
CUX1-218ENST00000560541 LINC00473A8K010 186 aa9.43□□□□□ -0.9
CUX1-218ENST00000560541 PMS2P5A8MQ11 134 aa9.43□□□□□ -0.9
CUX1-218ENST00000560541 DIRC3C9JPN6 131 aa9.43□□□□□ -0.9
CUX1-218ENST00000560541 FAM90A26D6RGX4 464 aa9.43□□□□□ -0.9
CUX1-218ENST00000560541 SP1P08047 785 aa9.43□□□□□ -0.9
CUX1-218ENST00000560541 IGLC2P0DOY2 106 aa9.43□□□□□ -0.9
CUX1-218ENST00000560541 IGLC3P0DOY3 106 aa9.43□□□□□ -0.9
CUX1-218ENST00000560541 ZNF83P51522 516 aa9.43□□□□□ -0.9
CUX1-218ENST00000560541 UBE2NP61088 152 aaKnown RBP9.43□□□□□ -0.9
CUX1-218ENST00000560541 H2BFWTQ7Z2G1 175 aa9.43□□□□□ -0.9
CUX1-218ENST00000560541 DERL1Q9BUN8 251 aa9.43□□□□□ -0.9
CUX1-218ENST00000560541 TRAPPC1Q9Y5R8 145 aa9.43□□□□□ -0.9
CUX1-218ENST00000560541 CADP27708 2225 aa9.43□□□□□ -0.9
CUX1-218ENST00000560541 AGFG2O95081 481 aa9.43□□□□□ -0.9
CUX1-218ENST00000560541 COX5AP20674 150 aa9.43□□□□□ -0.9
CUX1-218ENST00000560541 NPPCP23582 126 aa9.43□□□□□ -0.9
CUX1-218ENST00000560541 COL8A2P25067 703 aa9.43□□□□□ -0.9
CUX1-218ENST00000560541 ARG2P78540 354 aa9.43□□□□□ -0.9
CUX1-218ENST00000560541 ACSF3Q4G176 576 aaPredicted RBP9.43□□□□□ -0.9
CUX1-218ENST00000560541 ACTL10Q5JWF8 245 aa9.43□□□□□ -0.9
CUX1-218ENST00000560541 PEAR1Q5VY43 1037 aaPredicted RBP9.43□□□□□ -0.9
CUX1-218ENST00000560541 AGMATQ9BSE5 352 aa9.43□□□□□ -0.9
CUX1-218ENST00000560541 PSG11Q9UQ72 335 aa9.43□□□□□ -0.9
CUX1-218ENST00000560541 C11orf94C9JXX5 98 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 HRASP01112 189 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 MPLP40238 635 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 EDDM3BP56851 147 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 KIAA1644Q3SXP7 199 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 TCF23Q7RTU1 214 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 UBALD2Q8IYN6 164 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 OR2T10Q8NGZ9 312 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 COQ2Q96H96 371 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 TIMM9Q9Y5J7 89 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 A0A0U1RQK1 487 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 A0A1B0GV72 72 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 VSTM5A8MXK1 200 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 TMEM250H0YL14 139 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 MLNRO43193 412 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 ATP5G3P48201 142 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 RAB9AP51151 201 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 TPPP2P59282 170 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 CATR1Q13166 79 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 EDDM3AQ14507 147 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 SPRY4Q9C004 299 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 FAM78BQ5VT40 261 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 VKORC1L1Q8N0U8 176 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 OR13A1Q8NGR1 328 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 KLF14Q8TD94 323 aaPredicted RBP9.42□□□□□ -0.9
CUX1-218ENST00000560541 SFRP2Q96HF1 295 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 QTRT1Q9BXR0 403 aaKnown RBP9.42□□□□□ -0.9
CUX1-218ENST00000560541 TECTAO75443 2155 aa9.42□□□□□ -0.9
CUX1-218ENST00000560541 P0C879 139 aa9.41□□□□□ -0.9
CUX1-218ENST00000560541 IGHV1-2P23083 117 aa9.41□□□□□ -0.9
CUX1-218ENST00000560541 TSPOP30536 169 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms