RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 L7N2F9 121 aa9.41□□□□□ -0.9
LDLR-212ENST00000560467 SPDEFO95238 335 aa9.41□□□□□ -0.9
LDLR-212ENST00000560467 IFNA17P01571 189 aa9.41□□□□□ -0.9
LDLR-212ENST00000560467 IGKV1D-33P01593 117 aa9.41□□□□□ -0.9
LDLR-212ENST00000560467 IGKV1-33P01594 117 aa9.41□□□□□ -0.9
LDLR-212ENST00000560467 IGKV1-16P04430 117 aa9.41□□□□□ -0.9
LDLR-212ENST00000560467 TMEM11P17152 192 aa9.41□□□□□ -0.9
LDLR-212ENST00000560467 NKX2-1P43699 371 aaPredicted RBP9.41□□□□□ -0.9
LDLR-212ENST00000560467 LINC00205P59089 165 aa9.41□□□□□ -0.9
LDLR-212ENST00000560467 VAMP2P63027 116 aa9.41□□□□□ -0.9
LDLR-212ENST00000560467 DIAPH2-AS1Q14236 149 aa9.41□□□□□ -0.9
LDLR-212ENST00000560467 HNF4GQ14541 408 aa9.41□□□□□ -0.9
LDLR-212ENST00000560467 AANATQ16613 207 aa9.41□□□□□ -0.9
LDLR-212ENST00000560467 BEAN1Q3B7T3 259 aa9.41□□□□□ -0.9
LDLR-212ENST00000560467 FBLN7Q53RD9 439 aa9.41□□□□□ -0.9
LDLR-212ENST00000560467 TCTE3Q8IZS6 198 aa9.41□□□□□ -0.9
LDLR-212ENST00000560467 TEX45Q8NA69 505 aa9.41□□□□□ -0.9
LDLR-212ENST00000560467 ZBTB8BQ8NAP8 495 aaPredicted RBP9.41□□□□□ -0.9
LDLR-212ENST00000560467 LHFPL5Q8TAF8 219 aa9.41□□□□□ -0.9
LDLR-212ENST00000560467 GPR146Q96CH1 333 aa9.41□□□□□ -0.9
LDLR-212ENST00000560467 COMMD5Q9GZQ3 224 aa9.41□□□□□ -0.9
LDLR-212ENST00000560467 C16orf95Q9H693 158 aa9.41□□□□□ -0.9
LDLR-212ENST00000560467 TMEM140Q9NV12 185 aa9.41□□□□□ -0.9
LDLR-212ENST00000560467 CACNG5Q9UF02 275 aa9.41□□□□□ -0.9
LDLR-212ENST00000560467 NOTCH3Q9UM47 2321 aa9.4□□□□□ -0.9
LDLR-212ENST00000560467 FAM90A26D6RGX4 464 aa9.4□□□□□ -0.9
LDLR-212ENST00000560467 IGKV1-5P01602 117 aa9.4□□□□□ -0.9
LDLR-212ENST00000560467 SNRNP70P08621 437 aaKnown RBP9.4□□□□□ -0.9
LDLR-212ENST00000560467 C4BPBP20851 252 aa9.4□□□□□ -0.9
LDLR-212ENST00000560467 DYNLT3P51808 116 aa9.4□□□□□ -0.9
LDLR-212ENST00000560467 H2BFSP57053 126 aa9.4□□□□□ -0.9
LDLR-212ENST00000560467 UBE2KP61086 200 aa9.4□□□□□ -0.9
LDLR-212ENST00000560467 RPP30P78346 268 aaKnown RBP9.4□□□□□ -0.9
LDLR-212ENST00000560467 MMDQ15546 238 aa9.4□□□□□ -0.9
LDLR-212ENST00000560467 POU2AF1Q16633 256 aa9.4□□□□□ -0.9
LDLR-212ENST00000560467 LRRC75BQ2VPJ9 315 aa9.4□□□□□ -0.9
LDLR-212ENST00000560467 LRRC37A5PQ49AS3 106 aa9.4□□□□□ -0.9
LDLR-212ENST00000560467 NMSQ5H8A3 153 aa9.4□□□□□ -0.9
LDLR-212ENST00000560467 OR4A47Q6IF82 309 aa9.4□□□□□ -0.9
LDLR-212ENST00000560467 FOXRED2Q8IWF2 684 aa9.4□□□□□ -0.9
LDLR-212ENST00000560467 MMD2Q8IY49 270 aa9.4□□□□□ -0.9
LDLR-212ENST00000560467 INO80EQ8NBZ0 244 aaPredicted RBP9.4□□□□□ -0.9
LDLR-212ENST00000560467 OR10C1Q96KK4 312 aa9.4□□□□□ -0.9
LDLR-212ENST00000560467 NEURL2Q9BR09 285 aa9.4□□□□□ -0.9
LDLR-212ENST00000560467 MEGF9Q9H1U4 602 aa9.4□□□□□ -0.9
LDLR-212ENST00000560467 ZC4H2Q9NQZ6 224 aa9.4□□□□□ -0.9
LDLR-212ENST00000560467 BET1LQ9NYM9 111 aa9.4□□□□□ -0.9
LDLR-212ENST00000560467 VPREB3Q9UKI3 123 aa9.4□□□□□ -0.9
LDLR-212ENST00000560467 DSCAML1Q8TD84 2053 aa9.4□□□□□ -0.91
LDLR-212ENST00000560467 SLC25A17O43808 307 aa9.39□□□□□ -0.91
LDLR-212ENST00000560467 IGKV1-39P01597 117 aa9.39□□□□□ -0.91
LDLR-212ENST00000560467 IGKV1D-39P04432 117 aa9.39□□□□□ -0.91
LDLR-212ENST00000560467 FGF2P09038 288 aa9.39□□□□□ -0.91
LDLR-212ENST00000560467 MAS1LP35410 378 aa9.39□□□□□ -0.91
LDLR-212ENST00000560467 F2RL1P55085 397 aa9.39□□□□□ -0.91
LDLR-212ENST00000560467 BRWD1-AS2P59051 145 aa9.39□□□□□ -0.91
LDLR-212ENST00000560467 HABP2Q14520 560 aaPredicted RBP9.39□□□□□ -0.91
LDLR-212ENST00000560467 VKORC1L1Q8N0U8 176 aa9.39□□□□□ -0.91
LDLR-212ENST00000560467 OR5R1Q8NH85 324 aa9.39□□□□□ -0.91
LDLR-212ENST00000560467 PPP1R1CQ8WVI7 109 aa9.39□□□□□ -0.91
LDLR-212ENST00000560467 EAF1Q96JC9 268 aaPredicted RBP9.39□□□□□ -0.91
LDLR-212ENST00000560467 HYLS1Q96M11 299 aa9.39□□□□□ -0.91
LDLR-212ENST00000560467 CIB3Q96Q77 187 aaPredicted RBP9.39□□□□□ -0.91
LDLR-212ENST00000560467 FYTTD1Q96QD9 318 aaKnown RBP9.39□□□□□ -0.91
LDLR-212ENST00000560467 RAB40CQ96S21 281 aa9.39□□□□□ -0.91
LDLR-212ENST00000560467 SSX3Q99909 188 aa9.39□□□□□ -0.91
LDLR-212ENST00000560467 RASL11BQ9BPW5 248 aa9.39□□□□□ -0.91
LDLR-212ENST00000560467 HIPK2Q9H2X6 1198 aa9.39□□□□□ -0.91
LDLR-212ENST00000560467 LSM5Q9Y4Y9 91 aaKnown RBP9.39□□□□□ -0.91
LDLR-212ENST00000560467 CEBPZOSA8MTT3 80 aa9.38□□□□□ -0.91
LDLR-212ENST00000560467 M0QZK8 103 aa9.38□□□□□ -0.91
LDLR-212ENST00000560467 UPK2O00526 184 aa9.38□□□□□ -0.91
LDLR-212ENST00000560467 NBR2O15453 112 aa9.38□□□□□ -0.91
LDLR-212ENST00000560467 TSPAN9O75954 239 aa9.38□□□□□ -0.91
LDLR-212ENST00000560467 KBTBD11O94819 623 aa9.38□□□□□ -0.91
LDLR-212ENST00000560467 CNIH1O95406 144 aa9.38□□□□□ -0.91
LDLR-212ENST00000560467 C1QBP02746 253 aa9.38□□□□□ -0.91
LDLR-212ENST00000560467 SPCS3P61009 180 aa9.38□□□□□ -0.91
LDLR-212ENST00000560467 RPL23AP62750 156 aaKnown RBP9.38□□□□□ -0.91
LDLR-212ENST00000560467 RPL8P62917 257 aaKnown RBP9.38□□□□□ -0.91
LDLR-212ENST00000560467 PSG5Q15238 335 aa9.38□□□□□ -0.91
LDLR-212ENST00000560467 KPRPQ5T749 579 aaPredicted RBP9.38□□□□□ -0.91
LDLR-212ENST00000560467 SAMD5Q5TGI4 173 aa9.38□□□□□ -0.91
LDLR-212ENST00000560467 C11orf44Q8N8P7 122 aa9.38□□□□□ -0.91
LDLR-212ENST00000560467 OR5B3Q8NH48 314 aa9.38□□□□□ -0.91
LDLR-212ENST00000560467 OR52E5Q8NH55 327 aa9.38□□□□□ -0.91
LDLR-212ENST00000560467 TMEM167AQ8TBQ9 72 aa9.38□□□□□ -0.91
LDLR-212ENST00000560467 ST6GAL2Q96JF0 529 aa9.38□□□□□ -0.91
LDLR-212ENST00000560467 METTL1Q9UBP6 276 aaKnown RBP9.38□□□□□ -0.91
LDLR-212ENST00000560467 SIGLEC9Q9Y336 463 aa9.38□□□□□ -0.91
LDLR-212ENST00000560467 OR51B2Q9Y5P1 312 aa9.38□□□□□ -0.91
LDLR-212ENST00000560467 KMT2CQ8NEZ4 4911 aaKnown RBP9.37□□□□□ -0.91
LDLR-212ENST00000560467 FXYD6-FXYD2A0A087WZ82 144 aa9.37□□□□□ -0.91
LDLR-212ENST00000560467 MPTX1A8MV57 137 aa9.37□□□□□ -0.91
LDLR-212ENST00000560467 E5RGE8 158 aa9.37□□□□□ -0.91
LDLR-212ENST00000560467 RRHO14718 337 aa9.37□□□□□ -0.91
LDLR-212ENST00000560467 MPC2O95563 127 aa9.37□□□□□ -0.91
LDLR-212ENST00000560467 SAA1P0DJI8 122 aaPredicted RBP9.37□□□□□ -0.91
LDLR-212ENST00000560467 HSPE1P61604 102 aaKnown RBP9.37□□□□□ -0.91
LDLR-212ENST00000560467 EBI3Q14213 229 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 106.5 ms