RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 RLN1P04808 185 aa13.39□□□□□ -0.27
HDDC3-205ENST00000559898 CD7P09564 240 aa13.39□□□□□ -0.27
HDDC3-205ENST00000559898 NAT1P18440 290 aa13.39□□□□□ -0.27
HDDC3-205ENST00000559898 MAS1LP35410 378 aa13.39□□□□□ -0.27
HDDC3-205ENST00000559898 CBX5P45973 191 aa13.39□□□□□ -0.27
HDDC3-205ENST00000559898 HAGHQ16775 308 aa13.39□□□□□ -0.27
HDDC3-205ENST00000559898 AADACL3Q5VUY0 350 aa13.39□□□□□ -0.27
HDDC3-205ENST00000559898 SLC25A46Q96AG3 418 aa13.39□□□□□ -0.27
HDDC3-205ENST00000559898 PLEKHA3Q9HB20 300 aa13.39□□□□□ -0.27
HDDC3-205ENST00000559898 TMEM140Q9NV12 185 aa13.39□□□□□ -0.27
HDDC3-205ENST00000559898 COMMD3Q9UBI1 195 aa13.39□□□□□ -0.27
HDDC3-205ENST00000559898 NSG2Q9Y328 171 aa13.39□□□□□ -0.27
HDDC3-205ENST00000559898 SACSQ9NZJ4 4579 aa13.38□□□□□ -0.27
HDDC3-205ENST00000559898 C2orf70A6NJV1 201 aa13.38□□□□□ -0.27
HDDC3-205ENST00000559898 H0Y980 276 aa13.38□□□□□ -0.27
HDDC3-205ENST00000559898 RBFOX2O43251 390 aaKnown RBP eCLIP13.38□□□□□ -0.27
HDDC3-205ENST00000559898 PGLYRP1O75594 196 aaPredicted RBP13.38□□□□□ -0.27
HDDC3-205ENST00000559898 HPRT1P00492 218 aa13.38□□□□□ -0.27
HDDC3-205ENST00000559898 HLA-DMAP28067 261 aa13.38□□□□□ -0.27
HDDC3-205ENST00000559898 POU2AF1Q16633 256 aa13.38□□□□□ -0.27
HDDC3-205ENST00000559898 KLK9Q2XQG4 91 aa13.38□□□□□ -0.27
HDDC3-205ENST00000559898 DEFB114Q30KQ6 69 aa13.38□□□□□ -0.27
HDDC3-205ENST00000559898 ZNF585BQ52M93 769 aa13.38□□□□□ -0.27
HDDC3-205ENST00000559898 CASC10Q5T4H9 136 aa13.38□□□□□ -0.27
HDDC3-205ENST00000559898 DHRS11Q6UWP2 260 aa13.38□□□□□ -0.27
HDDC3-205ENST00000559898 SLC25A42Q86VD7 318 aa13.38□□□□□ -0.27
HDDC3-205ENST00000559898 SGPP2Q8IWX5 399 aa13.38□□□□□ -0.27
HDDC3-205ENST00000559898 Q8N402 240 aa13.38□□□□□ -0.27
HDDC3-205ENST00000559898 ZBTB34Q8NCN2 500 aa13.38□□□□□ -0.27
HDDC3-205ENST00000559898 MUC7Q8TAX7 377 aa13.38□□□□□ -0.27
HDDC3-205ENST00000559898 MOB3AQ96BX8 217 aa13.38□□□□□ -0.27
HDDC3-205ENST00000559898 KLK9Q9UKQ9 250 aa13.38□□□□□ -0.27
HDDC3-205ENST00000559898 RYR2Q92736 4967 aa13.38□□□□□ -0.27
HDDC3-205ENST00000559898 LYSTQ99698 3801 aa13.37□□□□□ -0.27
HDDC3-205ENST00000559898 IGHV3-35A0A0C4DH35 117 aa13.37□□□□□ -0.27
HDDC3-205ENST00000559898 TNFAIP8O95379 198 aa13.37□□□□□ -0.27
HDDC3-205ENST00000559898 FOLR2P14207 255 aa13.37□□□□□ -0.27
HDDC3-205ENST00000559898 HRH1P35367 487 aa13.37□□□□□ -0.27
HDDC3-205ENST00000559898 ARL3P36405 182 aa13.37□□□□□ -0.27
HDDC3-205ENST00000559898 MFAP2P55001 183 aa13.37□□□□□ -0.27
HDDC3-205ENST00000559898 TAS2R31P59538 309 aa13.37□□□□□ -0.27
HDDC3-205ENST00000559898 HERV-K104P61576 105 aa13.37□□□□□ -0.27
HDDC3-205ENST00000559898 TATDN3Q17R31 274 aa13.37□□□□□ -0.27
HDDC3-205ENST00000559898 LCN12Q6JVE5 192 aa13.37□□□□□ -0.27
HDDC3-205ENST00000559898 FCAMRQ8WWV6 532 aa13.37□□□□□ -0.27
HDDC3-205ENST00000559898 WDR89Q96FK6 387 aaPredicted RBP13.37□□□□□ -0.27
HDDC3-205ENST00000559898 PEMTQ9UBM1 199 aa13.37□□□□□ -0.27
HDDC3-205ENST00000559898 IGHV3-21A0A0B4J1V1 117 aa13.36□□□□□ -0.27
HDDC3-205ENST00000559898 TEX50A0A1B0GTY4 177 aa13.36□□□□□ -0.27
HDDC3-205ENST00000559898 DBX1A6NMT0 343 aa13.36□□□□□ -0.27
HDDC3-205ENST00000559898 C3orf84H3BNL1 204 aa13.36□□□□□ -0.27
HDDC3-205ENST00000559898 HPGDSO60760 199 aa13.36□□□□□ -0.27
HDDC3-205ENST00000559898 GGCTO75223 188 aaKnown RBP13.36□□□□□ -0.27
HDDC3-205ENST00000559898 SMIM18P0DKX4 95 aa13.36□□□□□ -0.27
HDDC3-205ENST00000559898 NQO2P16083 231 aa13.36□□□□□ -0.27
HDDC3-205ENST00000559898 ELK1P19419 428 aa13.36□□□□□ -0.27
HDDC3-205ENST00000559898 LPAR6P43657 344 aa13.36□□□□□ -0.27
HDDC3-205ENST00000559898 CD81P60033 236 aa13.36□□□□□ -0.27
HDDC3-205ENST00000559898 WT1-ASQ06250 92 aa13.36□□□□□ -0.27
HDDC3-205ENST00000559898 CATR1Q13166 79 aa13.36□□□□□ -0.27
HDDC3-205ENST00000559898 RNASE12Q5GAN4 147 aaKnown RBP13.36□□□□□ -0.27
HDDC3-205ENST00000559898 ZFAND6Q6FIF0 208 aa13.36□□□□□ -0.27
HDDC3-205ENST00000559898 UNQ9165/PRO28630Q6UXU0 137 aa13.36□□□□□ -0.27
HDDC3-205ENST00000559898 CROCCP3Q8IVE0 287 aa13.36□□□□□ -0.27
HDDC3-205ENST00000559898 DEFB125Q8N687 156 aa13.36□□□□□ -0.27
HDDC3-205ENST00000559898 DMBX1Q8NFW5 382 aa13.36□□□□□ -0.27
HDDC3-205ENST00000559898 OR5H2Q8NGV7 314 aa13.36□□□□□ -0.27
HDDC3-205ENST00000559898 OR4A5Q8NH83 315 aa13.36□□□□□ -0.27
HDDC3-205ENST00000559898 GPX8Q8TED1 209 aa13.36□□□□□ -0.27
HDDC3-205ENST00000559898 ZMAT4Q9H898 229 aa13.36□□□□□ -0.27
HDDC3-205ENST00000559898 TENM2Q9NT68 2774 aa13.36□□□□□ -0.27
HDDC3-205ENST00000559898 TMEM213A2RRL7 107 aa13.35□□□□□ -0.27
HDDC3-205ENST00000559898 PRSS3P35030 304 aa13.35□□□□□ -0.27
HDDC3-205ENST00000559898 G6PCP35575 357 aa13.35□□□□□ -0.27
HDDC3-205ENST00000559898 PHLDA2Q53GA4 152 aa13.35□□□□□ -0.27
HDDC3-205ENST00000559898 TM4SF20Q53R12 229 aa13.35□□□□□ -0.27
HDDC3-205ENST00000559898 SNX29P2Q8IUI4 249 aa13.35□□□□□ -0.27
HDDC3-205ENST00000559898 KCTD12Q96CX2 325 aaKnown RBP13.35□□□□□ -0.27
HDDC3-205ENST00000559898 FAM110AQ9BQ89 295 aa13.35□□□□□ -0.27
HDDC3-205ENST00000559898 EDA2RQ9HAV5 297 aa13.35□□□□□ -0.27
HDDC3-205ENST00000559898 PLEKHA2Q9HB19 425 aa13.35□□□□□ -0.27
HDDC3-205ENST00000559898 MLXQ9UH92 298 aa13.35□□□□□ -0.27
HDDC3-205ENST00000559898 RBMY1BA6NDE4 496 aaKnown RBP13.34□□□□□ -0.27
HDDC3-205ENST00000559898 RBMY1EA6NEQ0 496 aaKnown RBP13.34□□□□□ -0.27
HDDC3-205ENST00000559898 TMEM127O75204 238 aa13.34□□□□□ -0.27
HDDC3-205ENST00000559898 CLEC3BP05452 202 aa13.34□□□□□ -0.27
HDDC3-205ENST00000559898 RBMY1DP0C7P1 496 aaKnown RBP13.34□□□□□ -0.27
HDDC3-205ENST00000559898 DEFA4P12838 97 aa13.34□□□□□ -0.27
HDDC3-205ENST00000559898 LINC00322Q6ZN03 302 aaPredicted RBP13.34□□□□□ -0.27
HDDC3-205ENST00000559898 GPHB5Q86YW7 130 aa13.34□□□□□ -0.27
HDDC3-205ENST00000559898 ZNF502Q8TBZ5 544 aa13.34□□□□□ -0.27
HDDC3-205ENST00000559898 EEF1AKMT3Q96AZ1 226 aa13.34□□□□□ -0.27
HDDC3-205ENST00000559898 CITED4Q96RK1 184 aa13.34□□□□□ -0.27
HDDC3-205ENST00000559898 NEURL2Q9BR09 285 aa13.34□□□□□ -0.27
HDDC3-205ENST00000559898 ZNF320A2RRD8 509 aa13.33□□□□□ -0.28
HDDC3-205ENST00000559898 MARCH11A6NNE9 402 aa13.33□□□□□ -0.28
HDDC3-205ENST00000559898 LGALS9O00182 355 aa13.33□□□□□ -0.28
HDDC3-205ENST00000559898 KRASP01116 189 aa13.33□□□□□ -0.28
HDDC3-205ENST00000559898 IGKV1-39P01597 117 aa13.33□□□□□ -0.28
HDDC3-205ENST00000559898 IGKV1D-39P04432 117 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms