RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 C5orf66Q9H5L9 145 aa6.85□□□□□ -1.31
HDDC3-204ENST00000559834 BATF3Q9NR55 127 aa6.85□□□□□ -1.31
HDDC3-204ENST00000559834 BET1LQ9NYM9 111 aa6.85□□□□□ -1.31
HDDC3-204ENST00000559834 TAS2R8Q9NYW2 309 aa6.85□□□□□ -1.31
HDDC3-204ENST00000559834 ANXA10Q9UJ72 324 aa6.85□□□□□ -1.31
HDDC3-204ENST00000559834 ELF5Q9UKW6 265 aaPredicted RBP6.85□□□□□ -1.31
HDDC3-204ENST00000559834 BLOC1S6Q9UL45 172 aa6.85□□□□□ -1.31
HDDC3-204ENST00000559834 SELENOKQ9Y6D0 94 aa6.85□□□□□ -1.31
HDDC3-204ENST00000559834 KIR2DL5BA0A0G2JN68 375 aa6.84□□□□□ -1.31
HDDC3-204ENST00000559834 KIR2DL5BA0A0G2JPC4 375 aa6.84□□□□□ -1.31
HDDC3-204ENST00000559834 A0A0J9YWU9 116 aa6.84□□□□□ -1.31
HDDC3-204ENST00000559834 A0A1B0GW64 132 aa6.84□□□□□ -1.31
HDDC3-204ENST00000559834 NOTOA8MTQ0 251 aa6.84□□□□□ -1.31
HDDC3-204ENST00000559834 REG1AP05451 166 aa6.84□□□□□ -1.31
HDDC3-204ENST00000559834 ATF4P18848 351 aaPredicted RBP6.84□□□□□ -1.31
HDDC3-204ENST00000559834 PTBP1P26599 531 aaKnown RBP eCLIP6.84□□□□□ -1.31
HDDC3-204ENST00000559834 AQP4P55087 323 aa6.84□□□□□ -1.31
HDDC3-204ENST00000559834 BRWD1-AS2P59051 145 aa6.84□□□□□ -1.31
HDDC3-204ENST00000559834 ARPC4P59998 168 aa6.84□□□□□ -1.31
HDDC3-204ENST00000559834 TNFRSF9Q07011 255 aa6.84□□□□□ -1.31
HDDC3-204ENST00000559834 EIF4EBP1Q13541 118 aaPredicted RBP6.84□□□□□ -1.31
HDDC3-204ENST00000559834 PMS2P11Q13670 270 aa6.84□□□□□ -1.31
HDDC3-204ENST00000559834 MSMO1Q15800 293 aa6.84□□□□□ -1.31
HDDC3-204ENST00000559834 C22orf42Q6IC83 251 aa6.84□□□□□ -1.31
HDDC3-204ENST00000559834 C19orf35Q6ZS72 473 aa6.84□□□□□ -1.31
HDDC3-204ENST00000559834 LYG2Q86SG7 212 aa6.84□□□□□ -1.31
HDDC3-204ENST00000559834 SPAG16Q8N0X2 631 aa6.84□□□□□ -1.31
HDDC3-204ENST00000559834 KIR2DL5AQ8N109 375 aa6.84□□□□□ -1.31
HDDC3-204ENST00000559834 STPG3Q8N7X2 389 aa6.84□□□□□ -1.31
HDDC3-204ENST00000559834 KIR2DL5BQ8NHK3 375 aa6.84□□□□□ -1.31
HDDC3-204ENST00000559834 VN1R17PQ8TDU5 208 aa6.84□□□□□ -1.31
HDDC3-204ENST00000559834 COMMD5Q9GZQ3 224 aa6.84□□□□□ -1.31
HDDC3-204ENST00000559834 VCX3BQ9H321 246 aa6.84□□□□□ -1.31
HDDC3-204ENST00000559834 NDUFB11Q9NX14 153 aa6.84□□□□□ -1.31
HDDC3-204ENST00000559834 TMEM235A6NFC5 223 aa6.83□□□□□ -1.32
HDDC3-204ENST00000559834 MFSD2BA6NFX1 497 aa6.83□□□□□ -1.32
HDDC3-204ENST00000559834 RBFOX2O43251 390 aaKnown RBP eCLIP6.83□□□□□ -1.32
HDDC3-204ENST00000559834 HPRT1P00492 218 aa6.83□□□□□ -1.32
HDDC3-204ENST00000559834 NQO2P16083 231 aa6.83□□□□□ -1.32
HDDC3-204ENST00000559834 FCGR2CP31995 323 aa6.83□□□□□ -1.32
HDDC3-204ENST00000559834 GPR183P32249 361 aa6.83□□□□□ -1.32
HDDC3-204ENST00000559834 CMC4P56277 68 aaPredicted RBP6.83□□□□□ -1.32
HDDC3-204ENST00000559834 TAS2R31P59538 309 aa6.83□□□□□ -1.32
HDDC3-204ENST00000559834 OR2B8PP59922 312 aa6.83□□□□□ -1.32
HDDC3-204ENST00000559834 CATR1Q13166 79 aa6.83□□□□□ -1.32
HDDC3-204ENST00000559834 TIMM50Q3ZCQ8 353 aa6.83□□□□□ -1.32
HDDC3-204ENST00000559834 THOC7Q6I9Y2 204 aaKnown RBP6.83□□□□□ -1.32
HDDC3-204ENST00000559834 UNQ9165/PRO28630Q6UXU0 137 aa6.83□□□□□ -1.32
HDDC3-204ENST00000559834 HSD17B13Q7Z5P4 300 aaPredicted RBP6.83□□□□□ -1.32
HDDC3-204ENST00000559834 TPRA1Q86W33 373 aa6.83□□□□□ -1.32
HDDC3-204ENST00000559834 ZNF502Q8TBZ5 544 aa6.83□□□□□ -1.32
HDDC3-204ENST00000559834 CD300LFQ8TDQ1 290 aa6.83□□□□□ -1.32
HDDC3-204ENST00000559834 NUDCD2Q8WVJ2 157 aa6.83□□□□□ -1.32
HDDC3-204ENST00000559834 SECTM1Q8WVN6 248 aa6.83□□□□□ -1.32
HDDC3-204ENST00000559834 ZNF436Q9C0F3 470 aaPredicted RBP6.83□□□□□ -1.32
HDDC3-204ENST00000559834 C6orf62Q9GZU0 229 aaPredicted RBP6.83□□□□□ -1.32
HDDC3-204ENST00000559834 CCL28Q9NRJ3 127 aa6.83□□□□□ -1.32
HDDC3-204ENST00000559834 DNAH7Q8WXX0 4024 aa6.82□□□□□ -1.32
HDDC3-204ENST00000559834 IGHV3-35A0A0C4DH35 117 aa6.82□□□□□ -1.32
HDDC3-204ENST00000559834 UPK2O00526 184 aa6.82□□□□□ -1.32
HDDC3-204ENST00000559834 TSPAN4O14817 238 aa6.82□□□□□ -1.32
HDDC3-204ENST00000559834 TNFSF12O43508 249 aa6.82□□□□□ -1.32
HDDC3-204ENST00000559834 MRPS14O60783 128 aaKnown RBP6.82□□□□□ -1.32
HDDC3-204ENST00000559834 FGF2P09038 288 aa6.82□□□□□ -1.32
HDDC3-204ENST00000559834 FGF9P31371 208 aaPredicted RBP6.82□□□□□ -1.32
HDDC3-204ENST00000559834 HSPA13P48723 471 aa6.82□□□□□ -1.32
HDDC3-204ENST00000559834 POU2AF1Q16633 256 aa6.82□□□□□ -1.32
HDDC3-204ENST00000559834 SLC25A24Q6NUK1 477 aa6.82□□□□□ -1.32
HDDC3-204ENST00000559834 SPSB3Q6PJ21 355 aa6.82□□□□□ -1.32
HDDC3-204ENST00000559834 NR2C2APQ86WQ0 139 aa6.82□□□□□ -1.32
HDDC3-204ENST00000559834 BEST4Q8NFU0 473 aa6.82□□□□□ -1.32
HDDC3-204ENST00000559834 DMBX1Q8NFW5 382 aa6.82□□□□□ -1.32
HDDC3-204ENST00000559834 OR13F1Q8NGS4 319 aa6.82□□□□□ -1.32
HDDC3-204ENST00000559834 BORCS5Q969J3 196 aa6.82□□□□□ -1.32
HDDC3-204ENST00000559834 RNF183Q96D59 192 aa6.82□□□□□ -1.32
HDDC3-204ENST00000559834 BSCL2Q96G97 398 aaPredicted RBP6.82□□□□□ -1.32
HDDC3-204ENST00000559834 ATP6V0BQ99437 205 aa6.82□□□□□ -1.32
HDDC3-204ENST00000559834 QTRT1Q9BXR0 403 aaKnown RBP6.82□□□□□ -1.32
HDDC3-204ENST00000559834 SLC5A7Q9GZV3 580 aa6.82□□□□□ -1.32
HDDC3-204ENST00000559834 DAZ1Q9NQZ3 744 aaKnown RBP6.82□□□□□ -1.32
HDDC3-204ENST00000559834 DAPK2Q9UIK4 370 aa6.82□□□□□ -1.32
HDDC3-204ENST00000559834 EPPK1P58107 5090 aaKnown RBP6.82□□□□□ -1.32
HDDC3-204ENST00000559834 BIRC6Q9NR09 4857 aa6.82□□□□□ -1.32
HDDC3-204ENST00000559834 IGLC7A0M8Q6 106 aa6.81□□□□□ -1.32
HDDC3-204ENST00000559834 OR4C46A6NHA9 309 aa6.81□□□□□ -1.32
HDDC3-204ENST00000559834 A6NHS1 94 aa6.81□□□□□ -1.32
HDDC3-204ENST00000559834 CGB1A6NKQ9 187 aa6.81□□□□□ -1.32
HDDC3-204ENST00000559834 K7EMT4 169 aa6.81□□□□□ -1.32
HDDC3-204ENST00000559834 SULT1C2O00338 296 aa6.81□□□□□ -1.32
HDDC3-204ENST00000559834 NDUFA4O00483 81 aa6.81□□□□□ -1.32
HDDC3-204ENST00000559834 TGOLN2O43493 480 aa6.81□□□□□ -1.32
HDDC3-204ENST00000559834 SSX5O60225 188 aa6.81□□□□□ -1.32
HDDC3-204ENST00000559834 PPYP01298 95 aa6.81□□□□□ -1.32
HDDC3-204ENST00000559834 TRAPPC2P0DI81 140 aa6.81□□□□□ -1.32
HDDC3-204ENST00000559834 TRAPPC2BP0DI82 140 aa6.81□□□□□ -1.32
HDDC3-204ENST00000559834 RPA2P15927 270 aa6.81□□□□□ -1.32
HDDC3-204ENST00000559834 ERVK-16P61578 105 aa6.81□□□□□ -1.32
HDDC3-204ENST00000559834 DEFB135Q30KP9 77 aa6.81□□□□□ -1.32
HDDC3-204ENST00000559834 HOGA1Q86XE5 327 aa6.81□□□□□ -1.32
HDDC3-204ENST00000559834 GIMAP1Q8WWP7 306 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms