RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 CGB7P0DN87 165 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 MYOD1P15172 320 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 SLC25A16P16260 332 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 GNRHRP30968 328 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 HOXD3P31249 432 aaPredicted RBP4.15□□□□□ -1.75
LDLR-209ENST00000558528 ATP5J2P56134 94 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 DHRS2Q13268 280 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 PPP1R1AQ13522 171 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 C17orf58Q2M2W7 97 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 WDR25Q64LD2 544 aaPredicted RBP4.15□□□□□ -1.75
LDLR-209ENST00000558528 FAM71F2Q6NXP2 309 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 BTNL3Q6UXE8 466 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 LHFPL4Q7Z7J7 247 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 ZNF695Q8IW36 515 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 TCTE3Q8IZS6 198 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 LINC00311Q8N616 119 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 KIR3DL3Q8N743 410 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 FAM216BQ8N7L0 139 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 LRTM2Q8N967 370 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 OR5AU1Q8NGC0 362 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 OR13D1Q8NGV5 346 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 OR8U1Q8NH10 309 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 OR1L1Q8NH94 360 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 ZNF596Q8TC21 504 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 PDCD10Q9BUL8 212 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 METTL8Q9H825 291 aaKnown RBP4.15□□□□□ -1.75
LDLR-209ENST00000558528 HEXA-AS1Q9H8Q6 139 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 LPAR2Q9HBW0 351 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 SLC2A9Q9NRM0 540 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 ZNF581Q9P0T4 197 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 RPUSD1Q9UJJ7 312 aaKnown RBP4.15□□□□□ -1.75
LDLR-209ENST00000558528 AMMECR1Q9Y4X0 333 aaPredicted RBP4.15□□□□□ -1.75
LDLR-209ENST00000558528 IGKV1-6A0A0C4DH72 117 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 RPS10-NUDT3A0A1W2PQS6 291 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 C17orf98A8MV24 154 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 WRBO00258 174 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 HSD17B6O14756 317 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 PHF1O43189 567 aaPredicted RBP4.14□□□□□ -1.75
LDLR-209ENST00000558528 KCNAB3O43448 404 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 OR2A4O95047 310 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 NDUFB8O95169 186 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 CDS2O95674 445 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 S100A9P06702 114 aaKnown RBP4.14□□□□□ -1.75
LDLR-209ENST00000558528 SLC25A6P12236 298 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 VDAC1P21796 283 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 F2RP25116 425 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 UCP1P25874 307 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 DUTP33316 252 aaKnown RBP4.14□□□□□ -1.75
LDLR-209ENST00000558528 SSTR5P35346 364 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 NUP62P37198 522 aaPredicted RBP4.14□□□□□ -1.75
LDLR-209ENST00000558528 CEACAM3P40198 252 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 THBS3P49746 956 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 SRSF4Q08170 494 aaKnown RBP4.14□□□□□ -1.75
LDLR-209ENST00000558528 BAMBIQ13145 260 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 SMCO1Q147U7 214 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 HERPUD1Q15011 391 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 FCN2Q15485 313 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 ZFP69Q49AA0 526 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 PHLDA2Q53GA4 152 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 THOC7Q6I9Y2 204 aaKnown RBP4.14□□□□□ -1.75
LDLR-209ENST00000558528 PRSS57Q6UWY2 283 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 LYPD2Q6UXB3 125 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 ZNF841Q6ZN19 808 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 LDLRAD3Q86YD5 345 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 TPRX1Q8N7U7 411 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 ADAD2Q8NCV1 583 aaKnown RBP4.14□□□□□ -1.75
LDLR-209ENST00000558528 LY6G5BQ8NDX9 201 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 OR9G1Q8NH87 305 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 RFESDQ8TAC1 157 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 CASTOR1Q8WTX7 329 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 MRPL53Q96EL3 112 aaKnown RBP4.14□□□□□ -1.75
LDLR-209ENST00000558528 CXorf58Q96LI9 332 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 C2orf50Q96LR7 162 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 TMEM56Q96MV1 263 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 OR2A7Q96R45 310 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 FOXC2Q99958 501 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 SEC22CQ9BRL7 303 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 BEX2Q9BXY8 128 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 NMES1Q9C002 83 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 ZNF436Q9C0F3 470 aaPredicted RBP4.14□□□□□ -1.75
LDLR-209ENST00000558528 FXYD6Q9H0Q3 95 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 BEX1Q9HBH7 125 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 CCL28Q9NRJ3 127 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 KCNS2Q9ULS6 477 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 KPTNQ9Y664 436 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 TMEM56-RWDD3S4R434 201 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 FREM1Q5H8C1 2179 aa4.14□□□□□ -1.75
LDLR-209ENST00000558528 SVEP1Q4LDE5 3571 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 TRAV26-1A0A087WT03 109 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 TRAV39A0A0B4J263 110 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 SERTM2A0A1B0GWG4 89 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 A0A1W2PPR1 153 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 DBX1A6NMT0 343 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 A8MXK9 166 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 OOSP1A8MZH6 123 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 LYNX1G3V0Z9 82 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 GOSR2O14653 212 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 RBFOX2O43251 390 aaKnown RBP eCLIP4.13□□□□□ -1.75
LDLR-209ENST00000558528 HPRT1P00492 218 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 HRASP01112 189 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms