RNA–Protein interactions for RNA: ENST00000557657.5

TMEM260-216, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,572 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-216ENST00000557657 RBFOX2O43251 390 aaKnown RBP eCLIP17.38■□□□□ 0.37
TMEM260-216ENST00000557657 CDX1P47902 265 aaPredicted RBP17.38■□□□□ 0.37
TMEM260-216ENST00000557657 SELENOVP59797 346 aa17.38■□□□□ 0.37
TMEM260-216ENST00000557657 ZNF439Q8NDP4 499 aa17.38■□□□□ 0.37
TMEM260-216ENST00000557657 TMEM242Q9NWH2 141 aa17.38■□□□□ 0.37
TMEM260-216ENST00000557657 IDI2-AS1Q9NZ38 188 aa17.38■□□□□ 0.37
TMEM260-216ENST00000557657 GAB2Q9UQC2 676 aa17.38■□□□□ 0.37
TMEM260-216ENST00000557657 PXMP4Q9Y6I8 212 aa17.38■□□□□ 0.37
TMEM260-216ENST00000557657 DPRXA6NFQ7 191 aa17.38■□□□□ 0.37
TMEM260-216ENST00000557657 TMEM250H0YL14 139 aa17.38■□□□□ 0.37
TMEM260-216ENST00000557657 CRYABP02511 175 aaKnown RBP17.38■□□□□ 0.37
TMEM260-216ENST00000557657 ARL14EPLP0DKL9 152 aa17.38■□□□□ 0.37
TMEM260-216ENST00000557657 GNB1P62873 340 aa17.38■□□□□ 0.37
TMEM260-216ENST00000557657 ZNF788Q6ZQV5 615 aa17.38■□□□□ 0.37
TMEM260-216ENST00000557657 GGACTQ9BVM4 153 aa17.38■□□□□ 0.37
TMEM260-216ENST00000557657 MANBALQ9NQG1 85 aa17.38■□□□□ 0.37
TMEM260-216ENST00000557657 A0A1W2PPV4 95 aa17.37■□□□□ 0.37
TMEM260-216ENST00000557657 PHOX2AO14813 284 aa17.37■□□□□ 0.37
TMEM260-216ENST00000557657 PRR30Q53SZ7 412 aaPredicted RBP17.37■□□□□ 0.37
TMEM260-216ENST00000557657 PYY3Q5JQD4 70 aa17.37■□□□□ 0.37
TMEM260-216ENST00000557657 ZNF114Q8NC26 417 aa17.37■□□□□ 0.37
TMEM260-216ENST00000557657 NEIL1Q96FI4 390 aaPredicted RBP17.37■□□□□ 0.37
TMEM260-216ENST00000557657 TP53TG5Q9Y2B4 290 aa17.37■□□□□ 0.37
TMEM260-216ENST00000557657 ZZEF1O43149 2961 aa17.37■□□□□ 0.37
TMEM260-216ENST00000557657 CA2P00918 260 aa17.37■□□□□ 0.37
TMEM260-216ENST00000557657 PFN1P07737 140 aaKnown RBP17.37■□□□□ 0.37
TMEM260-216ENST00000557657 CCL3L1P16619 93 aa17.37■□□□□ 0.37
TMEM260-216ENST00000557657 CHRNA7P36544 502 aa17.37■□□□□ 0.37
TMEM260-216ENST00000557657 PDLIM3Q53GG5 364 aaPredicted RBP17.37■□□□□ 0.37
TMEM260-216ENST00000557657 NDUFB4O95168 129 aa17.36■□□□□ 0.37
TMEM260-216ENST00000557657 RAB7AP51149 207 aa17.36■□□□□ 0.37
TMEM260-216ENST00000557657 SEPSECSQ9HD40 501 aaKnown RBP17.36■□□□□ 0.37
TMEM260-216ENST00000557657 OR4A8P0C604 315 aa17.36■□□□□ 0.37
TMEM260-216ENST00000557657 CT45A6P0DMU7 189 aa17.36■□□□□ 0.37
TMEM260-216ENST00000557657 CT45A5P0DMU8 189 aa17.36■□□□□ 0.37
TMEM260-216ENST00000557657 CT45A7P0DMV0 189 aa17.36■□□□□ 0.37
TMEM260-216ENST00000557657 HNF1AP20823 631 aa17.36■□□□□ 0.37
TMEM260-216ENST00000557657 REG1BP48304 166 aa17.36■□□□□ 0.37
TMEM260-216ENST00000557657 BSPH1Q075Z2 132 aa17.36■□□□□ 0.37
TMEM260-216ENST00000557657 PRSS8Q16651 343 aa17.36■□□□□ 0.37
TMEM260-216ENST00000557657 OR52E5Q8NH55 327 aa17.36■□□□□ 0.37
TMEM260-216ENST00000557657 DIRC2Q96SL1 478 aa17.36■□□□□ 0.37
TMEM260-216ENST00000557657 PCGF1Q9BSM1 259 aa17.36■□□□□ 0.37
TMEM260-216ENST00000557657 NBASA2RRP1 2371 aa17.36■□□□□ 0.37
TMEM260-216ENST00000557657 A0A1W2PPQ1 181 aa17.35■□□□□ 0.37
TMEM260-216ENST00000557657 FAM90A9PA6NNJ1 464 aa17.35■□□□□ 0.37
TMEM260-216ENST00000557657 SEC14L6B5MCN3 397 aa17.35■□□□□ 0.37
TMEM260-216ENST00000557657 H7BYZ3 331 aa17.35■□□□□ 0.37
TMEM260-216ENST00000557657 GALR1P47211 349 aa17.35■□□□□ 0.37
TMEM260-216ENST00000557657 ADIPOQQ15848 244 aa17.35■□□□□ 0.37
TMEM260-216ENST00000557657 MLANAQ16655 118 aa17.35■□□□□ 0.37
TMEM260-216ENST00000557657 OR10D4PQ8NGN7 298 aa17.35■□□□□ 0.37
TMEM260-216ENST00000557657 TPRP12270 2363 aaKnown RBP17.35■□□□□ 0.37
TMEM260-216ENST00000557657 TRBV24-1A0A075B6N3 115 aa17.35■□□□□ 0.37
TMEM260-216ENST00000557657 FOXH1O75593 365 aa17.35■□□□□ 0.37
TMEM260-216ENST00000557657 THBDP07204 575 aa17.35■□□□□ 0.37
TMEM260-216ENST00000557657 SLC24A4Q8NFF2 622 aa17.35■□□□□ 0.37
TMEM260-216ENST00000557657 TMEM14BQ9NUH8 114 aa17.35■□□□□ 0.37
TMEM260-216ENST00000557657 SPTA1P02549 2419 aa17.35■□□□□ 0.37
TMEM260-216ENST00000557657 CSMD1Q96PZ7 3565 aa17.35■□□□□ 0.37
TMEM260-216ENST00000557657 TRBV23-1A0A0A0MS06 115 aa17.35■□□□□ 0.37
TMEM260-216ENST00000557657 NPY1RP25929 384 aa17.35■□□□□ 0.37
TMEM260-216ENST00000557657 OR13D1Q8NGV5 346 aa17.35■□□□□ 0.37
TMEM260-216ENST00000557657 OR4X1Q8NH49 305 aa17.35■□□□□ 0.37
TMEM260-216ENST00000557657 HSPE1P61604 102 aaKnown RBP17.34■□□□□ 0.37
TMEM260-216ENST00000557657 HIST3H2BBQ8N257 126 aa17.34■□□□□ 0.37
TMEM260-216ENST00000557657 TCEAL7Q9BRU2 100 aa17.34■□□□□ 0.37
TMEM260-216ENST00000557657 CTDSP1Q9GZU7 261 aa17.34■□□□□ 0.37
TMEM260-216ENST00000557657 OR51B2Q9Y5P1 312 aa17.34■□□□□ 0.37
TMEM260-216ENST00000557657 IL6RP08887 468 aaPredicted RBP17.34■□□□□ 0.37
TMEM260-216ENST00000557657 IGFBP2P18065 325 aa17.34■□□□□ 0.37
TMEM260-216ENST00000557657 OPRK1P41145 380 aa17.34■□□□□ 0.37
TMEM260-216ENST00000557657 FAM3BP58499 235 aaPredicted RBP17.34■□□□□ 0.37
TMEM260-216ENST00000557657 RPP30P78346 268 aaKnown RBP17.34■□□□□ 0.37
TMEM260-216ENST00000557657 Q8NA96 180 aa17.34■□□□□ 0.37
TMEM260-216ENST00000557657 NEUROG1Q92886 237 aa17.34■□□□□ 0.37
TMEM260-216ENST00000557657 GAR1Q9NY12 217 aaKnown RBP17.34■□□□□ 0.37
TMEM260-216ENST00000557657 C16orf97H3BN30 126 aa17.33■□□□□ 0.36
TMEM260-216ENST00000557657 C1QTNF9P0C862 333 aa17.33■□□□□ 0.36
TMEM260-216ENST00000557657 IRF2P14316 349 aa17.33■□□□□ 0.36
TMEM260-216ENST00000557657 TNFSF4P23510 183 aa17.33■□□□□ 0.36
TMEM260-216ENST00000557657 GATA2P23769 480 aaPredicted RBP17.33■□□□□ 0.36
TMEM260-216ENST00000557657 THBS3P49746 956 aa17.33■□□□□ 0.36
TMEM260-216ENST00000557657 B2MP61769 119 aa17.33■□□□□ 0.36
TMEM260-216ENST00000557657 DIAPH2-AS1Q14236 149 aa17.33■□□□□ 0.36
TMEM260-216ENST00000557657 OR10A7Q8NGE5 316 aa17.33■□□□□ 0.36
TMEM260-216ENST00000557657 LSM4Q9Y4Z0 139 aaKnown RBP17.33■□□□□ 0.36
TMEM260-216ENST00000557657 PLXNB1O43157 2135 aa17.33■□□□□ 0.36
TMEM260-216ENST00000557657 TRBV20OR9-2A0A075B6H5 130 aa17.33■□□□□ 0.36
TMEM260-216ENST00000557657 ACTL6BO94805 426 aa17.33■□□□□ 0.36
TMEM260-216ENST00000557657 KIR2DS2P43631 304 aa17.33■□□□□ 0.36
TMEM260-216ENST00000557657 C3orf36Q3SXR2 165 aa17.33■□□□□ 0.36
TMEM260-216ENST00000557657 KRTCAP3Q53RY4 240 aa17.33■□□□□ 0.36
TMEM260-216ENST00000557657 TMEM108Q6UXF1 575 aa17.33■□□□□ 0.36
TMEM260-216ENST00000557657 STPG3Q8N7X2 389 aa17.33■□□□□ 0.36
TMEM260-216ENST00000557657 OR10W1Q8NGF6 305 aa17.33■□□□□ 0.36
TMEM260-216ENST00000557657 CCL17Q92583 94 aa17.33■□□□□ 0.36
TMEM260-216ENST00000557657 RPUSD1Q9UJJ7 312 aaKnown RBP17.33■□□□□ 0.36
TMEM260-216ENST00000557657 FOXA2Q9Y261 457 aaPredicted RBP17.33■□□□□ 0.36
TMEM260-216ENST00000557657 PPP1R2P9O14990 202 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms